BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17490.1 Length=2015 Score E Sequences producing significant alignments: (Bits) Value Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1 2623 0.0 > Ahg488615 jgi|Araly1|488615|fgenesh2_kg.6__1749__AT5G17490.1 Length=1957 Score = 2623 bits (1420), Expect = 0.0 Identities = 1793/1967 (91%), Gaps = 50/1967 (3%) Strand=Plus/Plus Query 40 TCTCTTTTACTTACACTCTCCAGGTCCCTCACTTCCCTCATTGGACCTCTCTAACTCTCC 99 |||||||||||||||||||||||||| ||||||||||||||||| || || | Sbjct 26 TCTCTTTTACTTACACTCTCCAGGTCTCTCACTTCCCTCATTGG---------AC-CT-C 74 Query 100 TCTCTTACCTTCTCCTGTTTAAATTCTTCTCCTTTCTTTCCACAATTTCTGTCTAACCAA 159 || ||| | | | |||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 75 TC-CTT--C-T-T-CTGTTTAAATTCGTCTCCTTTCTTTCCACAATTTTTGCCTAACCAA 128 Query 160 TTCCAACACCAAAAAATTC--CATTTCTTGACGATGAAACGAAGCCATCAAGAAA-CGTC 216 |||| | ||||||||| |||||||||||||||||||||||||||||||||| | || Sbjct 129 CACCAA-A-AAAAAAATTCAACATTTCTTGACGATGAAACGAAGCCATCAAGAAACCTTC 186 Query 217 TGTAGAAGAAGAAGCTCCTTCAATGGTGGAGAAGTTAGAAAATGGTTGTGGTGGTGGTGG 276 ||||||||||||||||| |||||| ||||||| ||||| | || || |||||||||| Sbjct 187 -GTAGAAGAAGAAGCTCCGTCAATGACGGAGAAGCTAGAAGGTAGTGGTTGTGGTGGTGG 245 Query 277 AGACGATAACATGGACGAGTTTCTTGCTGTTTTGGGTTACAAGGTTCGATCTTCAGACAT 336 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 246 AGACGATAACATGGACGAGCTTCTTGCTGTTTTGGGCTACAAGGTTCGATCTTCAGACAT 305 Query 337 GGCAGATGTTGCACAGAAGCTTGAACAGCTTGAAATGGTCTTGTCCAATGATATTGCCTC 396 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 306 GGCTGATGTTGCACAGAAGCTTGAACAGCTTGAAATGGTCTTGTCCAATGATATTGGTTC 365 Query 397 TTCTAGTAATGCCTTCAATGACACCGTTCATTACAATCCTTCTGATCTCTCCGGTTGGGC 456 ||||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||| Sbjct 366 TTCTAATAATGCCTTAAACGACACTGTTCATTACAATCCTTCTGATCTCTCCGGTTGGGC 425 Query 457 TCAGAGCATGCTCTCGGATCTTAATTACTACCCGGATCTTGACCCGAACCGGATTTGCGA 516 ||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| Sbjct 426 TCAGAGCATGCTCTCCGAGCTTAACTACTACCCGGATCTCGACCCGAACCGGATTTGCGA 485 Query 517 TCTGAGACCAAT-CACAGACGACGATGAGTGTTGCAGTAGCAATAGTAACAGCAACAAGA 575 |||||||||||| || ||||||||| ||||||||||||||| |||||||||||||||| Sbjct 486 TCTGAGACCAATCCA-AGACGACGACGAGTGTTGCAGTAGC---AGTAACAGCAACAAGA 541 Query 576 GGATTCGACTCGGTCCTTGGTGTGACTCAGTGACCAGCGAGTCAACTCGTTCCGTGGTGC 635 |||||||||||| |||||||| ||||||||||| |||||| |||||||||||||| || | Sbjct 542 GGATTCGACTCGCTCCTTGGTATGACTCAGTGAGCAGCGACTCAACTCGTTCCGTCGTCC 601 Query 636 TTATCGAGGAGACAGGAGTTAGACTCGTTCAGGCGCTAGTGGCCTGCGCCGAGGCGGTTC 695 ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct 602 TTATCGAGGAGACCGGAGTCAGACTCGTCCAGGCGCTAGTGGCCTGCGCCGAGGCGGTCC 661 Query 696 AGC-TGGAGAATCTGAGCCTCGCGGATGCTCTCGTCAAGCGCGTGGGATTACTCGCGGCT 754 ||| | ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 662 AGCAT-GAGAATCTGAGCCTCGCGGATGCTCTCGTGAAGCGCGTGGGATCACTCGCGGCT 720 Query 755 TCTCAAGCCGGAGCCATGGGGAAAGTCGCTACCTACTTCGCCGAAGCCCTAGCTCGTCGA 814 |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 721 TCTCAAGCGGGAGCGATGGGGAAAGTCGCCACCTACTTCGCCGAAGCCCTAGCTCGTCGG 780 Query 815 ATTTACCGGATTCATCCTTCCGCCGCCGCCATTGATCCTTCCTTCGAAGAGATTCTTCAG 874 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 781 ATTTACCGGATTCATCCTTCCTCCGCCGCCATTGATCCTTCCTTTGAAGAGATTCTTCAG 840 Query 875 ATGAACTTCTACGACTCGTGTCCCTACCTGAAATTCGCTCATTTCACGGCCAATCAGGCG 934 ||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| Sbjct 841 ATGAATTTCTACGACTCGTGTCCTTACCTCAAATTCGCTCATTTCACAGCCAATCAAGCG 900 Query 935 ATTCTAGAAGCTGTTACGACGTCGCGTGTCGTACACGTAATCGATCTAGGGCTTAATCAA 994 ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 901 ATTCTAGAAGCCGTTACGACGTCGCGTGGCGTACACGTTATCGATCTAGGGCTTAATCAA 960 Query 995 GGTATGCAATGGCCGGCGTTAATGCAAGCCTTAGCTCTCCGACCCGGTGGTCCACCGTCG 1054 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 961 GGGATGCAATGGCCGGCGTTAATGCAAGCCTTAGCTCTCCGACCCGGTGGTCCTCCGTCG 1020 Query 1055 TTTCGTCTCACCGGCGTTGGGAATCCGTCGAATCGAGAAGGGATTCAAGAGTTAGGTTGG 1114 |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| Sbjct 1021 TTTCGTCTCACCGGCGTTGGGACTCCGTCGAATCGTGACGGGATTCAAGAGTTAGGTTGG 1080 Query 1115 AAGCTAGCTCAGCTGGCTCAAGCCATCGGCGTCGAATTCAAATTCAATGGTCTAACGACG 1174 ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| Sbjct 1081 AAGCTAGCTCAGCTGGCTCAAGCCATCGGCGTCGAATTCGAGTTCAATGGTCGAACGACG 1140 Query 1175 GAGAGGTTATCCGATTTAGAACCGGATATGTTCGAGACCCGAACCGAATCGGAGACTCTA 1234 ||||| ||||||||||| |||||| ||||||||||||||||| |||| ||||||||| || Sbjct 1141 GAGAGATTATCCGATTTGGAACCGTATATGTTCGAGACCCGACCCGAGTCGGAGACTTTA 1200 Query 1235 GTGGTTAATTCGGTTTTCGAGCTTCACCCGGTTTTATCCCAACCCGGTTCGATCGAAAAG 1294 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1201 GTGGTTAATTCGGTTTTCGAGCTTCACCCGGTTTTATCGCAACCCGGTTCGATCGAAAAG 1260 Query 1295 CTGTTAGCGACGGTTAAGGCGGTTAAACCGGGTCTCGTAACAGTGGTGGAACAAGAAGCG 1354 ||||||| |||||||||||||||||||||| || ||||||| |||||||||||||||||| Sbjct 1261 CTGTTAGTGACGGTTAAGGCGGTTAAACCGAGTATCGTAACGGTGGTGGAACAAGAAGCG 1320 Query 1355 AACCATAACGGTGACGTTTTCTTAGACCGGTTTAACGAAGCGCTTCACTATTACTCGAGC 1414 ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1321 AACCATAACGGCGCCGTTTTCTTAGACCGGTTTAACGAAGCGCTACACTATTACTCGAGC 1380 Query 1415 TTGTTCGACTCGCTCGAAGATGGTGTTGTGATACCGAGTCAAGACCGAGTCATGTCGGAG 1474 ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1381 TTGTTTGACTCGCTCGAAGATGGTGTTGTCTTACCGAGTCAAGACCGAGTCATGTCGGAG 1440 Query 1475 GTTTACTTAGGGAGACAGATATTGAACTTGGTGGCGACGGAAGGAAGCGATAGGATCGAG 1534 ||||||||||||||||||| |||||| |||||||| ||||||||| ||| |||||||| Sbjct 1441 ATTTACTTAGGGAGACAGATTTTGAACGTGGTGGCGGCGGAAGGAATTGATCGGATCGAG 1500 Query 1535 CGACACGAGACGCTGGCTCAGTGGCGAAAACGTATGGGATCCGCCGGGTTTGACCCGGTT 1594 || || ||||| |||||||||||||| ||||| |||| |||||||||||||||||||||| Sbjct 1501 CGGCATGAGACACTGGCTCAGTGGCGGAAACGGATGGAATCCGCCGGGTTTGACCCGGTT 1560 Query 1595 AACCTCGGATCAGACGCGTTTAAGCAAGCGAGTTTGCTATTGGCGTTATCTGGCGGTGGA 1654 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1561 AATCTCGGATCAGACGCGTTTAAGCAAGCGAGTTTGCTATTGGCGTTATCTGGCGGCGGA 1620 Query 1655 GATGGATACAGAGTGGAGGAGAACGACGGAAGCCTAATGCTTGCGTGGCAAACGAAACCT 1714 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1621 GATGGATACAGAGTGGAGGAGAACGACGGAAGCCTTATGCTTGCGTGGCAGACGAAACCG 1680 Query 1715 CTAATCGCTGCATCGGCGTGGAAACTAGCGGCGGAGTTGCGGCGGTAGATACGT-CGTCA 1773 || ||||| ||||||||||||||||| |||| ||||||||||||||||| | | ||||| Sbjct 1681 CTCATCGCCGCATCGGCGTGGAAACTGGCGGTGGAGTTGCGGCGGTAGAGAT-TACGTCA 1739 Query 1774 TAAAGAGGAGAAGAAA-AAAGACTTAGCGAA--CGTGACCTT--ATGTTTTTATTTTACT 1828 || | | | |||||| ||| | || || || ||||||||| |||||||| ||||||| Sbjct 1740 TAGATA--A-AAGAAATAAA-ATTT-GCAAAAACGTGACCTTTTATGTTTTTGTTTTACT 1794 Query 1829 TTAACTTACCCCAGTAGTTTCGTTTTGTGACAATTTCGCCCGAAATATTCCGTGCCTTAT 1888 || || ||||||| |||||||||||| ||||||||||||||||| |||||| ||| || | Sbjct 1795 TTGACGTACCCCACTAGTTTCGTTTTATGACAATTTCGCCCGAATTATTCCTTGCTTT-T 1853 Query 1889 ACTTTTGGGACCCAGTTGGTTCGTTGGTCGT-G-G--AGATTCGAGAACGAGGAACATGT 1944 ||||||||||||||||||||||||||||||| | | |||||||| || ||||||||||| Sbjct 1854 ACTTTTGGGACCCAGTTGGTTCGTTGGTCGTCGAGCGAGATTCGAAAATGAGGAACATGT 1913 Query 1945 GTGTATGTAACAACAGCACGAGCAAGTGTTTTCATAGTTTGAATAAA 1991 ||| |||||||| |||||||| |||||||| || ||||||||||| Sbjct 1914 GTGCATGTAACA---GCACGAGCTAGTGTTTTGATTGTTTGAATAAA 1957 Score = 58.4 bits (31), Expect = 2e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1 ACATGCGAAATTATAATGGCCTGCCTCTCTT 31 ||||||||||||||||||||||||||||||| Sbjct 1 ACATGCGAAATTATAATGGCCTGCCTCTCTT 31 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75761497305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5