BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17600.1
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488627 jgi|Araly1|488627|fgenesh2_kg.6__1761__AT5G17600.1 1674 0.0
Ahg477600 jgi|Araly1|477600|fgenesh2_kg.3__301__AT3G03550.1 217 2e-55
> Ahg488627 jgi|Araly1|488627|fgenesh2_kg.6__1761__AT5G17600.1
Length=1303
Score = 1674 bits (906), Expect = 0.0
Identities = 1208/1345 (90%), Gaps = 55/1345 (4%)
Strand=Plus/Plus
Query 1 GCCCAAAGATAAGGAGAGAAAGAGAGAGTGACACTTCACCACACCAtctcctctctctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1 GCCCAAAGATAAGGAGAGAAAGAGAGAGTGACACTTCACCACACCATCT-C-CTCTCT-- 56
Query 61 ctcttcttcttcctctttctctttctctgtttctGCAACACAAAAACACCATTGAGAACC 120
||||||||| | || | |||||||||| ||||||||||||||||||||| | ||
Sbjct 57 CTCTTCTTC-T--TC--T-TCTTTCTCTGCTTCTGCAACACAAAAACACCA-T--CAA-G 106
Query 121 AATCAAAATGTCGACAAACCCTAACCCATGGTCACCATACGA-T--TCATACAATGATTG 177
|||| ||||| | |||||||||| ||||||||||||||||| | || ||||| |||||
Sbjct 107 AATC-AAATG-C--CAAACCCTAATCCATGGTCACCATACGATTCCTCCTACAACGATTG 162
Query 178 TTCTCAAGGAATCTGCAACATCTACTGTCCTCAATGGTGTTACCTAAtcttccctcctcc 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CTCTCAAGGAATCTGCAACATCTACTGTCCTCAATGGTGTTACCTAATCTTCCCTCCTCC 222
Query 238 tcctccttctttcttcctcgacgacgactcttcctcctcctcctccagtttctctcctct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCCTCCTTCTTTCTTCCTCGACGACGACTCTTCCTCCTCCTCCTCCAGTTTCTCTCCTCT 282
Query 298 cctcatcgctctcATCGGTATCTTAACCAGCGCTCT-CATCCTCGTCAGCTACTACACTC 356
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 283 CCTCATCGCTCTCATCGGAATCTTAACCAGCGC-CTTCATCCTCGTCAGCTACTACACTC 341
Query 357 TCATCTCAAAATACTGTCATCGCCACCACCAAACCTCCTCTTCAGAAACTCTTAACCTAA 416
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 342 TCATCTCCAAGTACTGTCATCGCCACCACCAAACCTCCTCTTCAGAGACTCTTAACC-A- 399
Query 417 ATCATAACGGTGAGGGTTTCTTTTCCTCCACGCAAAGAATCTCCACGAATGGAGATGGAC 476
| | | | |||| |||||||| |||||||||||||||| ||| ||| |||||||||||
Sbjct 400 -T-A-A-CAGTGACGGTTTCTTCTCCTCCACGCAAAGAACCTCTGCGACTGGAGATGGAC 455
Query 477 TCAATGAGTCCATGATTAAATCAATCACTGTTTATAAGTATAA-AAGTGGAGATGGATTC 535
|||| || || ||||||||||||||||| |||||||| || || || ||||||||||||
Sbjct 456 TCAACGACTCTATGATTAAATCAATCACAGTTTATAAATACAAGAAA-GGAGATGGATTC 514
Query 536 GTTGATGGTTCAGATTGCTCTGTTTGTTTGAGTGAGTTTGAAGAAAACGAGAGTTTGAGA 595
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 515 GTCGATGGTTCTGATTGCTCTGTTTGTTTGAGTGAATTTGAAGAAAACGAGAGTTTGAGA 574
Query 596 TTGTTGCCGAAATGTAACCACGCGTTTCATCTTCCTTGTATTGATACTTGGTTAAAATCT 655
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 575 TTGTTGCCGAAATGTAATCACGCGTTTCATCTTCCTTGTATTGATACTTGGTTGAAATCT 634
Query 656 CACTCTAATTGTCCACTTTGCCGCGCTTTCGTCACCGGAGTTAATAATCCCACCGCCTCC 715
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 635 CACTCTAATTGTCCACTTTGCCGCGCTTTTGTCACCGGAGTTAATAATCCCACCGCCGCC 694
Query 716 GTCGGCCAGAATGTTTCAGTCGTTGTAGCTAACCAATCGAATTCTGCTCATCAAACCGGT 775
|||||| || || |||||| ||||||||||||||||||| ||| | ||||||| |||||
Sbjct 695 GTCGGCGAGGCTGGTTCAGTTGTTGTAGCTAACCAATCGAGTTCCGTTCATCAACCCGGT 754
Query 776 TCGGTATCTGAAATCAATTTGAATTTGGCCGGTTATGAA-AGCCAAACCGGTGATTTTGA 834
|||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||||
Sbjct 755 TCGGTATCCGAAATCAATTTGAATTTGGCCGGTTACCAACA-CCAAACCGGCGATTTTGA 813
Query 835 TTCCGTTGTTGTAATCGAAGATCTGGAAATTGGATCTCGGAATAGTGACGCTAGATCGGA 894
||||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 814 TTCCGTTGTTGTAATTGAAGATCTGGAAATTGGTTCTCCGAATAGTGACGGTAGATCGGA 873
Query 895 ATTGCAACTACCGGAGGAGAGACGGGAGACTAAGGATGAAGATTCGCTGCCGATTCGGAG 954
||| | || | ||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 874 ATTACTACCAGTGGAGGAGCGACGGGACTCTAAGGATGAAGATTCGCTGCCGATTCGGAG 933
Query 955 ATCTGTATCGTTGAACTCTGGTGTAGTGG-T-TT-CGATTGCTGATGTACTGCGAGAGAT 1011
|||||||||||||||||| |||||||||| | || |||||||||||||| ||||||||||
Sbjct 934 ATCTGTATCGTTGAACTCGGGTGTAGTGGGTGTTTCGATTGCTGATGTATTGCGAGAGAT 993
Query 1012 TGAAGACGAAGAAG--GA-GAATCCGGCGGAGTTGGAACTTCGCAGCGGCGAGAGGAAGG 1068
||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 994 CGAAGACGAAGAAGAAGAAGAATCCGGCGGTGTTGGAACTTCGCAGCGGCGACAGGAAGG 1053
Query 1069 GGAAGATGGCGATGGGAAGACGATTCCACCGACGGAGGCGAATCAGAGAAGCGGCGGAGT 1128
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1054 GGAAGATGGCGATGGGAAGACGCTTCCACCGACGGAGGCGAATCAGAGAAGCGGCGGAGT 1113
Query 1129 TTCGGGtttttttGTACGGAGTTTATCGACGGGAAGATTTATTTTCTCGAGGTATGATCG 1188
||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 ATCGAATTTTCTGGTACGGAGTTTATCGACGGGAAGATTTATTTTCTCGAGGTATGATCG 1173
Query 1189 AGGGCGAAATTACCGTCTGCCCCTTTAG-TGTAACAGAATTTCAAATTTACTGTTTTGTT 1247
|||||||||||||||| | ||| ||| | |||| | ||| ||| | |||| ||
Sbjct 1174 AGGGCGAAATTACCGTTTACCCAATTAAAT-TAACTGTTTTT----TTT--T-TTTTCTT 1225
Query 1248 ACTGTATTTACTGATAAAATTATACAGCTCACTAATAGTGAATTAGTGATTTCTTTTTGA 1307
|| | ||||||| || || ||| | | | ||||||||||||||||||||||||||||
Sbjct 1226 TCT-T-TTTACTG-TA---TT-TACTGATAAATAATAGTGAATTAGTGATTTCTTTTTGA 1278
Query 1308 AGGCTGAGAAAAAGTGATGATTATT 1332
|||||||||||||||||||||||||
Sbjct 1279 AGGCTGAGAAAAAGTGATGATTATT 1303
> Ahg477600 jgi|Araly1|477600|fgenesh2_kg.3__301__AT3G03550.1
Length=1345
Score = 217 bits (117), Expect = 2e-55
Identities = 208/250 (83%), Gaps = 13/250 (5%)
Strand=Plus/Plus
Query 136 AAACCCTAACCCAT--GGTCACCATACGATTCATACA-ATGATTGTTCTCAAGGAATCTG 192
||||||||| |||| ||| | ||||||||||||||| | || |||||||||||| | ||
Sbjct 82 AAACCCTAATCCATGGGGT-A-CATACGATTCATACAGA-GACTGTTCTCAAGGAGTATG 138
Query 193 CAACATCTACTGTCCTCAATGGTGTTACCTAAtcttccctcctcctcc-tccttctttct 251
|| ||||||| ||||||||||||||| | ||||||||||||||||| |||||| | |
Sbjct 139 CAGTGTCTACTGCCCTCAATGGTGTTACGTCATCTTCCCTCCTCCTCCTTCCTTC-TACC 197
Query 252 tcctcgacgacgactcttcctcctcctcctccagtttctctcctctcctcatcgctctcA 311
|| |||||| ||| ||| ||||||| || | |||||||||||||||||||||||| |
Sbjct 198 TCGACGACGAAGACGATTCTTCCTCCT-CT-GA-TTTCTCTCCTCTCCTCATCGCTCTTA 254
Query 312 TCGGTATCTTAACCAGCG-CTCTCATCCTCGTCAGCTACTACACTCTCATCTCAAAATAC 370
|||| ||| | | || | || ||||||||||||||||||||||||||||||| ||||||
Sbjct 255 TCGGAATCCTCGCTAGTGCCT-TCATCCTCGTCAGCTACTACACTCTCATCTCCAAATAC 313
Query 371 TGTCATCGCC 380
|| || ||||
Sbjct 314 TGCCACCGCC 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50131635855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5