BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17610.1 Length=691 Score E Sequences producing significant alignments: (Bits) Value Ahg488628 jgi|Araly1|488628|fgenesh2_kg.6__1762__AT5G17610.1 715 0.0 > Ahg488628 jgi|Araly1|488628|fgenesh2_kg.6__1762__AT5G17610.1 Length=582 Score = 715 bits (387), Expect = 0.0 Identities = 454/484 (94%), Gaps = 14/484 (3%) Strand=Plus/Plus Query 29 CTGGAACTAGCCACTGCGATCGGAGAAG-AA-AA-----A--G-CTCGAGAGACGCCATG 78 |||||||||||||||||||||||||||| || || | | |||||||||||||||| Sbjct 1 CTGGAACTAGCCACTGCGATCGGAGAAGAAACAAGCTCGAGTGTCTCGAGAGACGCCATG 60 Query 79 GAAATTTCCCAAGCTCGTTCAAGCTTCGTTTGTCTTCTTCTTCTGTTACTCTCCATGTGT 138 |||| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 61 GAAAATTCCCGAGCTCGTTCAAGCTTCGTTTG---TCTTCTTCTGTTACTCTCTATGTGT 117 Query 139 TTCGTTCCCTGCGTCTTTTCCAAATCTCCTCGTCCTATCTCCGATGTGGAGATCAGGCAG 198 ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 118 TTCGTTCCCTGCGTCTTTTCCAAATCTCCTCGTCCCATCTCCGATGTAGAAATCAGGCAG 177 Query 199 AAGAAGAGCGAATGCTACGGTGATATAGAGAGTGGGTTATGGGGTTGGCAATGCAAATCT 258 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 178 AAGAAGAGCGAATGCTACGCTGATATAGAGAGTGGGTTATGGGGTTGGCAATGCAAATCT 237 Query 259 TCTGCAATAGCGAAAGAGAATTGTGCGCTGCGATGCCTTTCTCCGGTTTGCTATCAACTC 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TCTGCAATAGCGAAAGAGAATTGTGCGCTGCGATGCCTTTCTCCGGTTTGCTATCAACTC 297 Query 319 ATTTATGAGAGTGATCCGCTTGAAGAAGGTGAAAAAGATTTGATTAGGAGCCAAGAGTAC 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ATTTATGAGAGTGATCCGCTTGAAGAAGGTGAAAAAGATTTGATTAGGAGCCAAGAGTAC 357 Query 379 AAGTATTGTATGTACAAGTCATCACTCGGGGAAAGCTTAGAGGGTGTTCGAGGCATCTTT 438 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| Sbjct 358 AAGTATTGTATGTACAAGTCATCACTCGGGGAAAGCTTAGACGGTGTCCGAGGCAGCTTT 417 Query 439 TGATGGTATCAAATAAGACTTTCTCAGTGAAGACATTTGCCAAAATCTGAGCTAAGCTCT 498 |||||||| |||| || | ||||||| |||||||||||||||||| |||||||||||||| Sbjct 418 TGATGGTA-CAAAGAAAAGTTTCTCAATGAAGACATTTGCCAAAAGCTGAGCTAAGCTCT 476 Query 499 TGAA 502 ||| Sbjct 477 CGAA 480 Score = 152 bits (82), Expect = 3e-36 Identities = 86/88 (98%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 537 GAAGCCATGTAAGGCTTCTTTTATTATAAACCTCAATTTTTGGGTTAATGGTTGTTTATA 596 |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 478 GAAGCCATGTAAGGCTTCTTTTGTTATAAACCTCAATTTTTGCGTTAATGGTTGTTTATA 537 Query 597 TGAAACGTTTACGTTTATGATTGGCAAA 624 |||||||||||||||||||||||||||| Sbjct 538 TGAAACGTTTACGTTTATGATTGGCAAA 565 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25389862722 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5