BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17780.2 Length=1480 Score E Sequences producing significant alignments: (Bits) Value Ahg326204 jgi|Araly1|326204|fgenesh1_pm.C_scaffold_6001424 1711 0.0 > Ahg326204 jgi|Araly1|326204|fgenesh1_pm.C_scaffold_6001424 Length=1275 Score = 1711 bits (926), Expect = 0.0 Identities = 1155/1264 (91%), Gaps = 21/1264 (2%) Strand=Plus/Plus Query 75 ATGTCTTTCCCGAGAAAATTCGGGACAGCGATTCACGCCGCTCTATCTTTTATCGTCTTC 134 |||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| ||| Sbjct 1 ATGTCTTTCCAGAGAAAATCCGGGACAGCGATTCACGTCGCTCTATCTTCAATCGTATTC 60 Query 135 TTTTTCTTGGACCTCCTCGACGCGATTCTCTGTGTCGTTTACGAGTTCGTCGATGAGATT 194 || |||||||||||| | |||||||||||||| |||||||||||||||||||| |||||| Sbjct 61 TTCTTCTTGGACCTCATTGACGCGATTCTCTGCGTCGTTTACGAGTTCGTCGACGAGATT 120 Query 195 TTGGAA-GAAAACTCAACAGGTTGTTACTGCACGGC-G--GCGGCTCCTCAAAGTCAAAC 250 |||||| ||||| |||| || |||||||||||||| | |||||| |||||| |||||| Sbjct 121 TTGGAAGGAAAA-TCAAGAGACTGTTACTGCACGGCGGCAGCGGCTTCTCAAATTCAAAC 179 Query 251 CACC-GACGAAAATGAGTTGTCGTCGGAGACTTTATTCGGGAGGAGAAACATTTTCCGGG 309 |||| | |||||||| | | ||| |||||||||||| |||||||||||||||||| || Sbjct 180 CACCTG-TGAAAATGA-AT-T-GTCAGAGACTTTATTCCGGAGGAGAAACATTTTCCAGG 235 Query 310 GAATGTGGTTTCTGGGATTCGCGAGAGAATTCAAATCCAAGCTTTC-CCGGAAACTGAGA 368 ||||||||||||||||||||| ||| ||||||||||||||||||| | ||||| ||| | Sbjct 236 AAATGTGGTTTCTGGGATTCGCTAGAAAATTCAAATCCAAGCTTTCTCGGGAAA-TGA-A 293 Query 369 AA-ATCTAAGATTCATCAAGAGTCAGTGAATCGATGGTCAGATTGTGGATGCAAATCTTG 427 || ||| ||||||| | ||||| |||||| |||||||||| ||||||||| ||||||| Sbjct 294 AATTTCTGAGATTCA-C--GAGTCGGTGAATAGATGGTCAGACTGTGGATGCCAATCTTG 350 Query 428 CAAGTCATGGACTAAGAACGAAGATGGGAATCTTCACGTCGTGGTCAAAGATTCTACTTC 487 ||| || ||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 351 CAATTCGTGGACGAAGAACAAAGATGGGAATCTTCACGTCGTGGTCAAAGATTCTACTTC 410 Query 488 TCGAGAAACAGAGTACTCTGTTCAAGAACCGTCCGAGAATGTAATATTCATACACGGTTT 547 || |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 411 TCCAGAAACAGAGTACTCTGTTCAAGAACCGTCTGAGAATGTAATATTTATACATGGTTT 470 Query 548 TATGGGGTCATCACATTTTTGGACAGAAACTGTATTTGAACACATTCAA-AAAGATGATT 606 |||||| ||||| |||||||||||||| ||||| ||||||| |||| || |||||||||| Sbjct 471 TATGGGTTCATCGCATTTTTGGACAGAGACTGTGTTTGAACTCATT-AAGAAAGATGATT 529 Query 607 ATAGGCTCCTCGCGATCGATCTTTTGGGATTCGGGGAGAGTCCTAAGCCAAGGGATAGTC 666 |||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 530 ATAGGCTCTTCGCTATCGATCTTTTGGGATTCGGGGATAGTCCTAAGCCAAGAGATAGTT 589 Query 667 TCTATACATTGAAAGATCATGTGGATACGATAGAGAGATCTGTCATTAAGCCATACCAAT 726 |||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||| Sbjct 590 TCTATACATTGAGAGATCATGTGGAGACGATAGAGAGATCTGTCATTAAGCCGTGTCAAT 649 Query 727 TAGATTCTTTTCATGTGGTTGCACATTCAATGGGTTGCTTAATTGCTCTTGCTTTGGCTG 786 ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 650 TAGATTCATTTCATGTAGTTGCACATTCGATGGGTTGCTTAATTGCTCTTGCTTTGGCTG 709 Query 787 CTAAACATTCCAACATTGTTAAATCCGTTACTCTTGTTGCACCGCCTTATTTTCCTTCAT 846 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 710 CTAAACACTCCAACATTGTTAAATCCGTCACTCTTGTTGCACCGCCTTATTTTCCTTCAT 769 Query 847 CGGTAGAAGGATCGGTCTTGAACCGAATCGCTAGAAAGCGGTTGTGGCCACCGCTTGCGT 906 | || |||||||| |||||||| |||||||||| ||||||||||||||| |||||||||| Sbjct 770 CAGTTGAAGGATCAGTCTTGAATCGAATCGCTAAAAAGCGGTTGTGGCCGCCGCTTGCGT 829 Query 907 TTGGGACAGCGGTGATGTCTTGGTATGAACATATTGGTAGATGCGTATGTTTCATAATCT 966 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 TTGGAACCGCGGTGATGTCTTGGTATGAACATATTGGTAGATGCGTATGTTTCATAATCT 889 Query 967 GCAAGCATCATAAGATATGGGAGTGGCTAATCAAGCTATGTATAGGTAAAAGGGAGATTC 1026 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 890 GCAAGCATCACAAGATATGGGAGTGGCTAATCAAGCTATGTATGGGTAAAAGGGAGATTC 949 Query 1027 ATTGGAAGATCAAGGACATAACAAGGCACACACATCACTCTGCATGGCATAGTATGCACA 1086 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 CTTGGAAGATAAAAGACATAACAAGGCACACACATCACTCTGCATGGCATAGTATGCACA 1009 Query 1087 ATGTGATATGTGGTGGCTCCAAAGTCGCTGATGAACATCTTGAAACCCTAATAAAGTCTG 1146 ||||||||||||||||||||||| | |||||||||||||| || ||||||||||| |||| Sbjct 1010 ATGTGATATGTGGTGGCTCCAAATTTGCTGATGAACATCTCGAGACCCTAATAAATTCTG 1069 Query 1147 GCGTTAAGATTCACTTGATGCAAGGCGACTGTGACCA-AATCGTTCCTTCACATTGCTCT 1205 ||||||||||||||||||||||||||||| | || | |||||||||||||||||||||| Sbjct 1070 GCGTTAAGATTCACTTGATGCAAGGCGACCGCGAT-AGAATCGTTCCTTCACATTGCTCT 1128 Query 1206 GGCAACATGAAGAGGACTTTTCCGGCGGTGGAAGTTGATATCATTACTGGTGCTGATCAT 1265 ||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| Sbjct 1129 AGCAACATGAAGAGGAGATTTCCGTCGGTGGAAGTTGATATCATCGCTGGTGCTGATCAT 1188 Query 1266 GATAGTATGATAAGCGGAAGAGGAGAAGAGTTTGCTGAGAAATTGGAGAGCATTTGGTGT 1325 |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1189 GATAGTATGATAAGTGGAAGAGGAGAAGAGTTTGTTGAGAAATTGGAGAGCATTTGGTGT 1248 Query 1326 TCAT 1329 |||| Sbjct 1249 TCAT 1252 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55383216230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5