BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17980.1 Length=3150 Score E Sequences producing significant alignments: (Bits) Value Ahg941312 jgi|Araly1|941312|scaffold_601856.1 4451 0.0 Ahg906707 jgi|Araly1|906707|Al_scaffold_0003_3835 346 6e-94 > Ahg941312 jgi|Araly1|941312|scaffold_601856.1 Length=3204 Score = 4451 bits (2410), Expect = 0.0 Identities = 2925/3173 (92%), Gaps = 38/3173 (1%) Strand=Plus/Plus Query 1 ATGGCAACAACCCGGAAACTGGTAGTAGAAGTAGTAGACGCAAAGGATCTTACACCAAAA 60 ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 22 ATGGCAACAACTCGGAAGTTGGTCGTAGAAGTAGTAGACGCAAAGGATCTTACACCAAAA 81 Query 61 GACGGTCATGGAACGTCAAGTCCGTACGTTGTCCTCGACTATTACGGCCAAAGAAGACGG 120 ||||| |||||||||||||| ||||||||| | |||||||||||||||||||| |||| Sbjct 82 GACGGCCATGGAACGTCAAGCCCGTACGTTATTGTCGACTATTACGGCCAAAGACGACGA 141 Query 121 ACACGAACCATAGTACGTGACTTAAACCCTGTTTGGAACGAGACACTCGAGTTCAGTCTC 180 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 ACACGAACCATAGTCCGTGACTTAAACCCTGTTTGGAACGAGACACTCGAGTTCAGTCTT 201 Query 181 GCAAAGCGACCATCTCATCAGCTCTTTACCGATGTTCTTGAGCTCGACATGTACCATGAC 240 || |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 202 GCGAAGCGACCTTCTCATCAGCTCTTTGCCGATGTTCTTGAGCTTGACATGTACCATGAC 261 Query 241 AAGAACTTTGGACAAACCCGGAGGAACAATTTTCTTGGTAGGATCCGACTTGGGTCCGAT 300 ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||| Sbjct 262 AAGAACTTTGGTCAAACACGGAGGAACAATTTTCTCGGTAGGATCCGACTTGGGCCCGAT 321 Query 301 CAGTTTGTTGGTCAAGGAGAAGAGGCTTTGATATATTATCCTTTGGAGAAGAAGAGTTTG 360 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 CAGTTTGTTGGTAAAGGAGAAGAGGCTTTGATATATTATCCTTTGGAGAAGAAGAGTTTG 381 Query 361 TTTAATCTTGTACAAGGTGAGATTGGGCTTAGGGTTTACTACGCCGATGAAAAGCCTCCT 420 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 382 TTTAATCTTGTGCAAGGTGAGATTGGTCTTAGGGTTTACTACGCCGATGAAAAGCCTCCT 441 Query 421 CCTTTGAAACCGACGGTAGCTCCTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 CCTTTGAAACCGACGGTAGCTCCTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACG 501 Query 481 AAGGCGGAAGGTCCAGACGAGTCTAAGCCACCACCAGAGACTAATGA-CATTCCTGCTGA 539 | ||| || ||||||||| ||||| |||||||||||||||||||||| | ||||||||| Sbjct 502 ACGGCAGACGGTCCAGACAAGTCTCAGCCACCACCAGAGACTAATGATGA-TCCTGCTGA 560 Query 540 AGTGAAAGAAACCGTGAAACCACCACAACCACCACCGGAGGAGAGTTCACCAGCCGAGGG 599 ||| ||||||||| | ||||||| ||||| ||||||||||||| ||| ||||||||||| Sbjct 561 AGTTAAAGAAACCCCGGAACCACCTCAACCGCCACCGGAGGAGAATTCGCCAGCCGAGGG 620 Query 600 TCCCAAGCCAGACGAGGAAGCCTCACCACCTTTACAAGAAAACGCTACGGTTGGTGGAGA 659 || ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 621 TCTCAAGCCAAACGAGGAAGCCTCACCACCGTTACAAGAAAATGCTACGGTTGGTGGAGA 680 Query 660 AGAACCA----C--CGG--------C-G---TCGGAATCAGATAAGAATGAAGCAGAGGC 701 ||||||| | ||| | | ||||||||||||||||||||||||| | Sbjct 681 AGAACCAGCGGCGTCGGAACCAACTCTGCCACCGGAATCAGATAAGAATGAAGCAGACGT 740 Query 702 GAAACCCGTGGAGGAGCCACCGCAGAATCAACCAGATGGTGAAGATATTGTGCTTGAGTC 761 |||||| ||||| |||||||||||||| |||||||| ||||||||| |||| |||||||| Sbjct 741 GAAACCGGTGGAAGAGCCACCGCAGAACCAACCAGACGGTGAAGATGTTGTACTTGAGTC 800 Query 762 AGAAGATACAATGAGTTGGGCTTCGGCGCCGCGATCACCGTTACCGGAAGTTATCATTTC 821 ||||||| ||||||| ||||||||||||||||||| | |||||||||||||||||| Sbjct 801 AGAAGATTCAATGAGCTGGGCTTCGGCGCCGCGAT---C---ACCGGAAGTTATCATTTC 854 Query 822 AAGATCTGTATCCGGTTCCATACCCGAAACCAAAAACGGACCACAACCACTACGGAGAAG 881 ||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 855 AAGATCTGTCTCCGGTTCCATACCAGAAATCAAAAACGGACCACAACCACTACGGAGAAG 914 Query 882 CGTATCGGAAACTGCAAGCTACACATCAGAGATCTCCGACGTATCAACGATCGAACGATC 941 |||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||| Sbjct 915 CGTATCGGAAACAGCCAGCTACACATCAGAGATCTCCGACGTGTCAACGATAGAACGATC 974 Query 942 CACGTTTGATTTGGTGGAGAAGATGCATTACGTCTTCATCCGCGTCGTGAAAGCTCGGTC 1001 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 975 CACGTTTGATTTGGTGGAGAAAATGCATTACGTCTTCGTCCGCGTCGTGAAAGCTCGGTC 1034 Query 1002 TTTACCAACCTCCGGGAGTCCAGTCACAAAGATCTCACTCTCCGGCACAATGATTCAATC 1061 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1035 TTTACCAACCTCCGGAAGTCCAGTCACAAAGATCTCACTCTCCGGCACAATGATCCAATC 1094 Query 1062 AAAACCGGCTAGAAAAACCTCTTGCTTCGAGTGGGATCAAACGTTCGCCTTCCTCCGTGA 1121 |||||| || |||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1095 AAAACCCGCCAGAAAAACCTCTTGCTTCGAGTGGGATCAAACCTTTGCCTTCCTCCGTGA 1154 Query 1122 CTCACCGGATTTATCTTCCTCTCCAATTCTGGAGATATCCGTGTGGGATTCATCGACGGG 1181 |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 1155 CTCACCGGATTTATCTTCTTCTCCAATTCTAGAGATCTCCGTGTGGGATTCATCGACGGA 1214 Query 1182 AATCGAAACCAGCCAATTCCTTGGTGGAATTTGCTTCGACGTGTCAGAGATTCCGCTCCG 1241 ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1215 AATCGAAACTAGCCAATTCCTCGGTGGAATTTGCTTTGACGTGTCAGAGATTCCGCTCCG 1274 Query 1242 AGACCCGCCGGATAGTCCATTAGCGCCGCAATGGTACCGTCTCGAAGGTGGTGGAGCTCA 1301 ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1275 AGATCCACCGGATAGTCCATTAGCACCGCAATGGTACCGTCTCGAAGGAGGTGGAGCTCA 1334 Query 1302 CAACAGTGATCTAATGCTTGCCACGTGGACAGGAACTCAAGCAGACGAATCATTCCCCGA 1361 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1335 CAACAGTGATCTAATGCTGGCCACGTGGACAGGAACTCAAGCAGACGAATCATTTCCCGA 1394 Query 1362 CGCGTGGAAAACTGATACAGCCGGAAACGTGACCGCACGAGCGAAGGTTTACATGTCGTC 1421 ||| |||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct 1395 CGCTTGGAAAACAGATACCGCCGGAAACGTAACCGCTCGAGCGAAAGTTTACATGTCGTC 1454 Query 1422 GAAGCTGTGGTATCTACGCGCTACCGTGATAGAAGCACAAGACTTGTTACCGCCTCAGTT 1481 ||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| ||||| Sbjct 1455 GAAGCTGTGGTATCTACGCGCCACCGTAATCGAAGCTCAAGACTTGTTACCGCCACAGTT 1514 Query 1482 AACGGCGTTTAAGGAAGCGTCATTTCAGTTAAAAGCTCAGTTAGGTTCCCAAGTTCAGAA 1541 |||||||||||| |||||||| ||||| |||||||||||| |||||| |||||| ||||| Sbjct 1515 AACGGCGTTTAAAGAAGCGTCGTTTCAATTAAAAGCTCAGCTAGGTTTCCAAGTGCAGAA 1574 Query 1542 AACCAAATCCGCCGTTACTCGTAACGGAGCTCCGTCATGGAACGAAGATCTACTCTTCGT 1601 |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| Sbjct 1575 AACCAAATCCGCCGTTACTCGTAATGGCGCGCCGTCATGGAACGAAGATCTACTCTTCGT 1634 Query 1602 AGCCGCCGAACCTTTCTCCGATCAGCTTGTTTTCACGTTGGAGTATCGAACATCGAAAGG 1661 ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1635 AGCCGCCGAGCCTTTCTCCGATCAGCTAGTTTTCACACTGGAGTATCGAACATCGAAAGG 1694 Query 1662 ACCAGTCACCGTCGGAATGGCTCGCGTGCCACTCAGC-GCAATCGAGAGACGCGTCGACG 1720 |||||||||||||| ||||| |||||||| |||| | ||||||||||||||||||| | Sbjct 1695 GCCAGTCACCGTCGGTATGGCGCGCGTGCCTCTCA-CTTCAATCGAGAGACGCGTCGATG 1753 Query 1721 ATCGCTTGGTTGCTTCGAGATGGTTAGGATTGGAAGATCCAAACGACGAGAAGAGAGGAA 1780 |||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 1754 ATCGTTTGGTGGCTTCGAGATGGTTCGGATTCGAAGATCCAAACGACGAGAAAAGAGGAA 1813 Query 1781 ACAGATCTAGAGTTCACAT-T-AGGCTTTGCTTCGACGGAGGTTATCACGTGATGGACGA 1838 |||||||||||| | |||| | || || || |||||||| |||||||||||||||||||| Sbjct 1814 ACAGATCTAGAG-T-ACATCTGAGACTCTGTTTCGACGGTGGTTATCACGTGATGGACGA 1871 Query 1839 GGCGGCGCACGTGTGCAGTGATTACCGACCTACGGCGAGGCAGTTATGGAAACCAGCGGT 1898 ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| Sbjct 1872 GGCGGTACACGTGTGCAGCGATTACCGGCCTACGGCGAGGCAGTTATGGAAACCGGCGGT 1931 Query 1899 GGGAATCGTCGAGCTCGGTATAATCGGTTGCAAAAATCTATTACCGATGAAGACGGTTAA 1958 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 1932 AGGAATCGTCGAGCTCGGTATAATCGGTTGCAAGAATCTGTTACCGATGAAGACGGTGAA 1991 Query 1959 CGGAAAAGGATCAACGGACGCGTACACGGTGGCGAAATACGGTTCTAAATGGGTCCGTAC 2018 ||||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 1992 CGGAAAAGGTTCCACGGATGCGTACACGGTGGCGAAATACGGTACTAAATGGGTCCGTAC 2051 Query 2019 CCGAACCGTGTCGGATTCTTTAGATCCGAAATGGAACGAACAGTACACGTGGAAAGTATA 2078 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2052 CCGAACCGTATCGGATTCTTTAGATCCGAAATGGAACGAACAGTACACGTGGAAAGTATA 2111 Query 2079 CGATCCGTGTACGGTTTTGACTATAGGAGTCTTCGATAGCTGGGGAGTATACGAAGTCGA 2138 ||||||||||||||||||||| || ||||||||||||||||||||||||| |||| || | Sbjct 2112 CGATCCGTGTACGGTTTTGACGATTGGAGTCTTCGATAGCTGGGGAGTATTCGAAATCAA 2171 Query 2139 CGGTGGAAAAGAAGCCACGCGTCAAGATCTAAGAATTGGAAAAGTACGTATACGTATATC 2198 | |||||||||||||||||||||| ||||| | || || ||||| |||||||||||||| Sbjct 2172 CAGTGGAAAAGAAGCCACGCGTCAGGATCTCCGTATCGGGAAAGTTCGTATACGTATATC 2231 Query 2199 GACGCTGGAGACTGGTAAAGCGTATAGAAATACGTATCCG-TTACTGATGTTAGTTAACG 2257 ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 2232 TACGCTGGAGACTGGTAAAGCGTATAGAAATACGTATCCGCTT-CTGATGTTAGTTAACG 2290 Query 2258 GCGGCGTTAAAAAATTGGGAGAGATAGAATTGGCCGTTAGATTCGTGAGAACAGCTCCAC 2317 |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2291 GCGGTGTTAAAAAACTGGGAGAGATAGAATTGGCCGTTAGATTCGTGAGATCAGCTCCAC 2350 Query 2318 CGTTGGATTTCTTACACGTGTATACTCAACCGTTATTGCCTTTGATGCATCACATTAAAC 2377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351 CGTTGGATTTCTTACACGTGTATACTCAACCGTTATTGCCTTTGATGCATCACATTAAAC 2410 Query 2378 CGTTGAGTTTGTTTCAAGAAGATATGTTGAGGAACACTGCAGTGAAGATCTTGGCCGCAC 2437 ||||||||||| |||||||||| |||||||||||| |||| |||| ||||||||| || | Sbjct 2411 CGTTGAGTTTGATTCAAGAAGAGATGTTGAGGAACGCTGCCGTGAGGATCTTGGCTGCCC 2470 Query 2438 ATTTGTCACGATCTGAGCCGCCTTTAAGGCCGGAGATAGTACGGTATATGCTCGACGCCG 2497 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 2471 ATTTGTCACGATCTGAGCCGCCTTTAAGGCCGGAGATCGTACGGTACATGCTCGACGCCG 2530 Query 2498 ATACTCATACTTTCAGTATGCGTAAAGTCAGAGCAAATTGGCTTCGGATAGTGAATGTAG 2557 || |||| ||||||||||||||||||||| ||||||||||||| || || || || || | Sbjct 2531 ATTCTCACACTTTCAGTATGCGTAAAGTCCGAGCAAATTGGCTCCGCATTGTTAACGTGG 2590 Query 2558 TCGCCGGAATGGTCGACGTGGTGCGGTGGGTTGATGACACCCGTTTCTGGAAGAATCCGA 2617 ||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||| Sbjct 2591 TCGCCGGAATGGTCGACATAGTGCGGTGGGTGGATGACACACGTTTCTGGAAGAATCCGA 2650 Query 2618 CATCAACTTTACTAGTTCACGCACTTGTCGTGATGCTGATTTGGTTCCCGGATCTTATCG 2677 |||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || | Sbjct 2651 CATCTACTTTACTAGTTCACGCTCTTGTCGTGATGCTGATATGGTTCCCTGATCTCATTG 2710 Query 2678 TACCGACATTAGCGTTTTACTTGTTCGTGATTGGTGCGTGGAATTATAGGTTCAGGTCAC 2737 | || |||||||||||||||||||||||||| || ||||||||||| || |||||||||| Sbjct 2711 TTCCCACATTAGCGTTTTACTTGTTCGTGATCGGCGCGTGGAATTACAGATTCAGGTCAC 2770 Query 2738 GTGCTGCTCTACCACA-TTTCGATCCAAGACTCTCGTTAGCTGATGCAGCTGATAGAGAC 2796 |||||||||| || || ||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 2771 GTGCTGCTCTTCCTCACTTT-GATCCAAGACTCTCGTTGGCTGATGCAGCCGATAGAGAA 2829 Query 2797 GAGCTCGACGAGGAGTTTGACGTCGTACCGAGCAACCGACCACCGGAGATGGTTCGGTTG 2856 ||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 2830 GAGCTTGACGAGGAGTTTGACGTCGTCCCGAGCAACCGGCCGCCGGAGATGGTTCGGTTG 2889 Query 2857 AGGTACGATAAGCTACGAAACGTCGGAGCTAGAGTTCAAACGATTCTTGGTGAAGTGGC- 2915 |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| || Sbjct 2890 AGGTACGATAAGCTACGAAATGTCGGAGCTCGAGTTCAGACGATTCTTGGTGAAGTAGCG 2949 Query 2916 TGCGCAAGGGGAGAAGATGCAAGCTTTGGTGACGTGGCGTGACCCACGAGCGACTGGTAT 2975 | | ||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 2950 T-CTCAAGGAGAGAAAATGCAAGCTTTGGTGACGTGGCGAGACCCACGAGCGACGGGTAT 3008 Query 2976 ATTCGTGGGGCTGTGTTTCTTTGTGGCGTTGGTGTTGTATCTTGTGCCGACGAAGATGGT 3035 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3009 ATTCGTGGGGCTGTGTTTATTTGTGGCGTTGGTGTTGTATCTTGTGCCGACGAAGATGGT 3068 Query 3036 GGCTATGGCGTCAGGGTTTTATTACTTCCGGCATCCTATTTTCCGTGATCGGAAACCTTC 3095 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 3069 GGCTATGGCGTCAGGGTTTTATTACTTCCGGCATCCTATATTCCGTGACCGGAAACCTTC 3128 Query 3096 TCCGGTGTTAAATTTCTTCCGGCGACTACCATCATTATCTGATCGGCTCATGT 3148 ||||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct 3129 GCCGGTGTTAAACTTCTTCCGGCGACTACCTTCGTTATCTGATCGGCTCATGT 3181 > Ahg906707 jgi|Araly1|906707|Al_scaffold_0003_3835 Length=486 Score = 346 bits (187), Expect = 6e-94 Identities = 263/298 (88%), Gaps = 12/298 (4%) Strand=Plus/Plus Query 379 GAGATTGGGCTTAGGGTTTACTACGCCGATGAAAAGCCTCCTCCTTTGAAACCGACGGTA 438 |||||||||| |||||||||||||||||||||||||||| |||||||||||||| || || Sbjct 151 GAGATTGGGCATAGGGTTTACTACGCCGATGAAAAGCCTTCTCCTTTGAAACCGGCGTTA 210 Query 439 GCTCCTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACGAAGGC-GGAAGGTCCAGA 497 | ||||||||||||||||||||||||||||||||||||||| | | ||| | || ||| Sbjct 211 G---CTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACGACGACAGGA-GCTCGAGA 266 Query 498 CGA---GTCTAAGCCACCACCAGAGACTAATGACA-TTCCTGCTGAAGTGAAAGAAACC- 552 ||| |||| || ||||||||||||||||||||| ||| | ||||||||| |||| || Sbjct 267 CGAATCGTCTCAGTCACCACCAGAGACTAATGACAGTTCTT-CTGAAGTGACAGAA-CCT 324 Query 553 GTGAAACCACCACAACCACCACCGGAGGAGAGTTCACCAGCCGAGGGTCCCAAGCCAGAC 612 ||| ||||||||||||| |||| |||||||||||| |||| ||| |||||||| || || Sbjct 325 GTGGAACCACCACAACCGCCACTGGAGGAGAGTTCTCCAGTCGAAGGTCCCAATACAAAC 384 Query 613 GAGGAAGCCTCACCACCTTTACAAGAAAACGCTACGGTTGGTGGAGAAGAACCACCGG 670 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 385 GAGGAAGCCTCACCACCGTTACAAGAAAATGCTACGGTTGGTGGAGAAGAACCACCGG 442 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 118993925380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5