BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18110.1 Length=1120 Score E Sequences producing significant alignments: (Bits) Value Ahg488676 jgi|Araly1|488676|fgenesh2_kg.6__1810__AT5G18110.1 1522 0.0 > Ahg488676 jgi|Araly1|488676|fgenesh2_kg.6__1810__AT5G18110.1 Length=1079 Score = 1522 bits (824), Expect = 0.0 Identities = 1019/1108 (92%), Gaps = 34/1108 (3%) Strand=Plus/Plus Query 8 ttcttctctcctcctctttcttcttcCTGATTGGAATTTTAGGGCTTTTGAAAGCACGAA 67 ||||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct 1 TTCTTCTCTTCTCCTCTTTCTTCTTCCTGATTAGATTTTTAGGGCTTTTG-AAGCACGAA 59 Query 68 CGCGTGAAGCTCTAATCGAGaaaaaaaTGGAGGTTTTGGATAGGAGAGACGATGAGATCA 127 ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 60 CGCGTTAAGCTCTAATCGAGAAAAAAATGGAGGTTGCGGATAGGAGAGACGAGGAGATCA 119 Query 128 GGGACTCGGGAAACATGGACAGCATCAAGTCACACTATGTTACCGACTCTGTTTCCGAGG 187 ||||||| ||||||||||||| |||| |||| |||||||| ||||||||||||||||| | Sbjct 120 GGGACTCTGGAAACATGGACATCATCGAGTCGCACTATGTCACCGACTCTGTTTCCGAAG 179 Query 188 AACGCCGCTCTCGTGAGCTCAAGGATGGAGACCATCCTTTACGGTACAAGTTTTCGATAT 247 |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 180 AACGTCGCTCTCGTGAGCTCAAGGATGGTCTCCATCCTCTACGGTACAAGTTTTCGATAT 239 Query 248 GGTACACTCGTCGCACACCAGGGGTTCGGAACCAGTCTTATGAAGATAACATCAAGAAGA 307 |||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 240 GGTACACTCGTCGCACACCAGGGGTTCGGAACCAATCTTATGAGGATAACATTAAGAAGA 299 Query 308 TGGTAGAATTCAGCACGGTTGAAGGATTTTGGGCCTGCTACTGTCACCTTGCTCGTTCTT 367 |||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct 300 TGGTGGAATTCAGCACTGTTGAAGGGTTTTGGGCCTGCTACTGTCACCTTGCACGTTCTT 359 Query 368 CTCTCTTGCCTAGTCCAACAGATCTTCATTTCTTTAAGGATGGGATTCGTCCATTGTGGG 427 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 360 CTCTCTTGCCTAGTCCAACAGATCTTCATTTCTTTAAGGATGGGATTCGTCCGTTGTGGG 419 Query 428 AGGAT-GGTGCCAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCAAAAGTTGTATCT 486 ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AGG-TAGGCGCCAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCAAAAGTTGTATCT 478 Query 487 GCTCGCTTCTGGGAGGATCTGCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGAT 546 ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 479 GCTCGCTTCTGGGAGGATCTGCTTCTTGCATTGGTAGGCGACCAGCTTGACGACGCTGAT 538 Query 547 AACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAAT 606 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 539 AACATATGTGGGGCAGTACTGAGTGTCCGCTTCAATGAGGACATCATTAGTGTATGGAAT 598 Query 607 CGCAATGCTTCTGACCATCAGGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTG 666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CGCAATGCTTCTGACCATCAGGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTG 658 Query 667 AAGTTGCCTCATGCATATGTCATGGAATACAAGCCACACGATGCTTCTCTCCGCGACAAC 726 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 659 AAGTTGCCCCATGCATATGTCATGGAATACAAGCCCCACGATGCTTCTCTCCGCGACAAC 718 Query 727 TCTTCCTACAGAAACACATGGCTGAGAGGATAGGCCCAAAGTCGATGATTGTATCATGTA 786 ||||||||||||||||||||||||||||||||||| |||||| || ||||| |||||||| Sbjct 719 TCTTCCTACAGAAACACATGGCTGAGAGGATAGGCTCAAAGTGGACGATTGCATCATGTA 778 Query 787 ATGTGGAGAAGATTTGGGAAGCTCATCTGCAACCTGGGAAGATATCTGGATTGAACCCTG 846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ATGTGGAGAAGATTTGGGAAGCTCATCTGCAACCTGGGAAGATATCTGGATTGAACCCTG 838 Query 847 TATCCAATACCATACTGTACCGGAGGCTTACAATATCAGAAAAAA----CAAAATCCGGG 902 |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| || Sbjct 839 TATCCAATACCATACTGTACCGAAGGCTTACAATACCAGAAAAAAAAAACAAAATCCCGG 898 Query 903 CTACTTCTGTGTCAGTATGTGTTCATTTCGTTTTTCTTTTACAGTACATCTTGTTAACTT 962 | | ||||||||||||||||| | | | | ||||||||| || ||| Sbjct 899 CAAATTCTGTGTCAGTATGTG--C-T--C-----------A---TACATCTTGCTACCTT 939 Query 963 CAATGGTTTGACTCTTGATCAAAACTATAAGGATGTATTTTCAATGAAAACTGGAAATTA 1022 ||||||||||||||||| |||||||| | | | | || |||||||||||||| |||| Sbjct 940 CAATGGTTTGACTCTTGTTCAAAACT-TCA---T-T-TT--CAATGAAAACTGGAGATTA 991 Query 1023 CGTTCTGGTTTACATTATAACTCATGTCTTAAAAAGTAACAGGATGTCAATATACAATGT 1082 ||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||| | Sbjct 992 CGTACTGGTTTACATTATGACTCGTGTCTTAAACAGTAACAGGATGTCAATATACAATTT 1051 Query 1083 CACTTCGTACGATGATCTCTAATGTACA 1110 |||||||||| ||| ||||||||||||| Sbjct 1052 CACTTCGTACTATGGTCTCTAATGTACA 1079 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41744594115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5