BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18130.1 Length=1330 Score E Sequences producing significant alignments: (Bits) Value Ahg488679 jgi|Araly1|488679|fgenesh2_kg.6__1813__AT5G18130.1 1633 0.0 > Ahg488679 jgi|Araly1|488679|fgenesh2_kg.6__1813__AT5G18130.1 Length=1100 Score = 1633 bits (884), Expect = 0.0 Identities = 1034/1103 (94%), Gaps = 24/1103 (2%) Strand=Plus/Plus Query 1 AGAGAAACCACTTCGCAACGATGAGGGAGATAGGTCACTCCTCAAAATTACCAAACACAA 60 ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| | Sbjct 1 AGAGAAACCACTTCGAAACGATGAGAGAGATAGGTCTCTCCTCAAAATTACCAAACAC-A 59 Query 61 ATTAGCTCCAATAATTGCAACAAATCACTCTCACCCAAACAAAACTTTTCAAAAGCCCTA 120 |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| Sbjct 60 ATTAGCTCCAATAACTGAAACAAATCACTCTCACCCAAACAAAACTTTTCAAAAACCCTA 119 Query 121 ATCCGAGAAATCATTCGACAACAACACGAAGGAGATGGATCTAGAAGATTGGGAAATACT 180 ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 120 ATCCGAGAAATCAATCAACAACAACTCGAAGGAGATGGATCTAGAAGATTGGGAAATACT 179 Query 181 CCCCA-AAATCAACTACAAGGGTCTCGAACTTGATCTCGGTCATGAAGAGGATCATGAAG 239 ||||| ||| || ||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 180 CCCCAGAAA-CATCTACAAGGGTCTCGATCTTGATCTCGGTCATGACGAGGATCATGAAG 238 Query 240 TTACGAAGATGATGAGAAACACCGCAAAAAGCTTCGACAGTGATTACTTCATCTGCCCAA 299 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 239 CTACGAAGATGATGAGAAACACCGGAAAAAGCTTCGACAGTGATTACTTCATCTGCCCAA 298 Query 300 TTCAAGATTCTGTCGGAAAGACAGAGTTTCTTCATCAGAGATCTAGCGTGGTCCCCACAC 359 ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| Sbjct 299 TTCAAGATTCTGTCGGAAAAACAGAGCTTCTTCATCATAGATCTAGCGTGGTCCCCACAC 358 Query 360 AACTCCTCCAGATTCCAATAACTTGGGAACCTTTGTCCCCCGTGGACG---ACAAAGATC 416 |||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||| Sbjct 359 AACTCCTCCAAATTCCCATAACTTGGGAACCTTTATCCCCCGTGGACGACAACAAAGATC 418 Query 417 ACAATAAGTACCTGGATCCGGATTTCTCGGAACCAGACCCGGAACTTTTGACGGAGTCTT 476 |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 419 ACAAGAAGTACCCGGATCCGGATTTCTCGGAACCAGACCCGGAACTGTTGACGGAGTCTC 478 Query 477 TTCCGTCGCCGAGAATAACCTTCAAGAAATCGAAGGAAACCGAATTTGCCGACATGAAAA 536 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 479 TTCCGTCGCCGAGAATAACCTTCAAGAAAACGAAGGAAACCGAATTTGCCGACATGAAAA 538 Query 537 TAGATTCACCAGCAGCGAGGTTCACTAGTCCTCTGCCGCAGAACGATGAGAGACACTCTG 596 |||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||| Sbjct 539 TAGATTCACCAGCAGCGAGGCTCACGAGTCCTCTGCCTCAGAACGATGAGAAACACTCTG 598 Query 597 ACTCAGAAGGAGGGTTAGGAGGAGAGTCTTATGATGAGATCATGGGATCAGAGGTTGAAG 656 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 599 ACTCAGAAGGAGGGTTAGGAGGAGAGTCCTATGATGAGATCATGGGATCAGAGGTTGAAG 658 Query 657 AAAGCAGTGACTTGAGTAGCAAGAAAGAGGTTGATTGGGATGAAGGTGAAAGAACGAATC 716 || | ||||||||||| |||||||||||||||||||||||||||||||||| || ||||| Sbjct 659 AAGGTAGTGACTTGAGGAGCAAGAAAGAGGTTGATTGGGATGAAGGTGAAAAAATGAATC 718 Query 717 TGTGGAAGAAGGGTCTTAATGGAATTGGAGCTATATGTTCATTTGGTGTTGCAGCTGCTG 776 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TGTGGAAAAAAGGTCTTAATGGAATTGGAGCTATATGTTCATTTGGTGTTGCAGCTGCTG 778 Query 777 CAGCCACCATATGTGTCTTCTTCCTTGGACACAACAGTAGCATCCAAGGTGGTCGGAACA 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 CAGCCACCATATGTGTCTTCTTCCTTGGACACAACAGTAGCATCCAAGGTGGTCGGAACA 838 Query 837 AGAACCAGATCCTCAGGTTCCAGATTTACTCTGATGATAATAAGCGGATGAACGAGGTAG 896 ||||||| ||| | ||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 839 AGAACCAAATCTTAAGGTTTCAGATTTACTCTGATGATAATAAGCGAATGAACGAGGTAG 898 Query 897 TGAAACATGCAACAAAGCTAAATGAAGCAATCTCTGTGATGAAAGGTCTTCCGGTGGCAA 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TGAAACATGCAACAAAGCTAAATGAAGCAATCTCTGTGATGAAAGGTCTTCCGGTGGCAA 958 Query 957 GAGCTCAAATATCTTTTGGAGGATACTACGATGCACTTTGAATCATAGCCATA--T-A-- 1011 |||||||||||||||||||||||||||||||||||||||||| |||||||||| | | Sbjct 959 GAGCTCAAATATCTTTTGGAGGATACTACGATGCACTTTGAAACATAGCCATAACTGAAT 1018 Query 1012 --GC-CAT-AGATCCAATGTCTTCTGCTTAATCGCC--TC--T---ATAGCTTATGTATT 1060 || ||| |||||||||||||||||||||||| || | | |||||||||||||| Sbjct 1019 CAGCACATCAGATCCAATGTCTTCTGCTTAATCACCAATGGGTTTTATAGCTTATGTATT 1078 Query 1061 TACGAATTTAGGAA-ATTCAATA 1082 ||||||||||| || |||||||| Sbjct 1079 TACGAATTTAG-AATATTCAATA 1100 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49750406685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5