BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18170.1 Length=1593 Score E Sequences producing significant alignments: (Bits) Value Ahg488683 jgi|Araly1|488683|fgenesh2_kg.6__1817__AT5G18170.1 2183 0.0 Ahg927924 jgi|Araly1|927924|scaffold_300381.1 1301 0.0 > Ahg488683 jgi|Araly1|488683|fgenesh2_kg.6__1817__AT5G18170.1 Length=1501 Score = 2183 bits (1182), Expect = 0.0 Identities = 1394/1490 (94%), Gaps = 40/1490 (3%) Strand=Plus/Plus Query 3 ATCAGACTGACACCAATCTTCCTC-TTTAACAGTCGTTTTATTACAGCGTTCTGATCAAA 61 |||| |||||||||||||||| || |||||||||| ||||||||||||||||||||| | Sbjct 1 ATCACACTGACACCAATCTTCTTCTTTTAACAGTCTTTTTATTACAGCGTTCTGATC--A 58 Query 62 ACTCCAGTGAAAGTTCAAAGTACACagagagaaacaaaaaaagaagaagaagaagttgaa 121 | | |||| | || ||||||||||| || ||||||||||||||||| ||| Sbjct 59 A----A---AAAG-T---AG---ACAGAGAGAAAGAAGAAAAGAAGAAGAAGAAGAAGAA 104 Query 122 gaagaagaagCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGCTAGG 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105 GAAGAAGAAGCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGCTAGG 164 Query 182 CTTCTTGGTCTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAATCAAG 241 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 CTTCTTGGTTTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAATCAAG 224 Query 242 GTGGAATGTACCATACCGAAAGACGATGGTACACTAGCATCATTCGTTGGGTTCAGAGTT 301 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 225 GTGGAATGTACCATACCGAAAGACGATGGGACACTAGCATCATTCGTTGGGTTTAGAGTT 284 Query 302 CAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCTGAGGTTGAT 361 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 285 CAACACGACAATGCAAGAGGTCCCATGAAAGGCGGAATCAGATATCATCCCGAGGTTGAT 344 Query 362 CCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATT 421 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 345 CCGGATGAAGTGAACGCACTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATT 404 Query 422 CCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTGATCCTAGCAAGCTCAGTATCTCCGAG 481 || ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 405 CCATACGGAGGAGCCAAAGGAGGGATTGGTTGTGATCCGAGCAAGCTCAGTATATCCGAG 464 Query 482 CTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATTCATGATCTCATTGGGATTCATACT 541 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 465 CTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATTGGGATTCAGACT 524 Query 542 GATGTTCCAGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGATGAA 601 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 GATGTTCCTGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGATGAG 584 Query 602 TACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCTTGGT 661 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 585 TACTCTAAGTTCCATGGATATTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCTTGGT 644 Query 662 GGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGCTTTG 721 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 645 GGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGAACCGAAGCTTTG 704 Query 722 CTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTGTCATCCAGGGATTTGGTAAT 781 |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||| Sbjct 705 CTTAACGAGCACGGCAAGAGCATATCGGGGCAGCGTTTTGTCATCCAGGGATTTGGGAAT 764 Query 782 GTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCCGTGAGT 841 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 765 GTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCGGTGAGT 824 Query 842 GACATTACCGGAGCAATCAAGAACAAGGATGGTATCGATATCCCGGCCTTGCTCAAGCAT 901 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 825 GACATTACCGGAGCAATCAAGAATAAGGATGGTATCGATATCCCGGCCTTGCTCAAGCAT 884 Query 902 ACTAAAGAACACAGAGGTGTCAAAGGGTTTGATGGTGCAGATCCGATCGATCCAAACTCC 961 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 885 ACTAAAGAACACAGAGGTGTCAAAGGGTTTGACGGTGCAGATTCGATCGATCCAAACTCC 944 Query 962 ATACTGGTTGAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAGG 1021 |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 945 ATACTGGTCGAGGATTGCGATATCCTCGTCCCTGCAGCACTTGGCGGTGTCATCAACAGG 1004 Query 1022 GAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCATCCAACTGAT 1081 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1005 GAAAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCTGCTAATCATCCAACTGAT 1064 Query 1082 CCGGACGCGGATGAGATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACATATATGCA 1141 |||||||||||||||||| | ||||||||||||||||| |||||||| |||||||||||| Sbjct 1065 CCGGACGCGGATGAGATCTTGAGTAAGAAAGGTGTGGTAATTCTCCCAGACATATATGCA 1124 Query 1142 AACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGAACATTCAAGGCTTTATG 1201 |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| Sbjct 1125 AACTCTGGAGGAGTCACTGTCAGTTACTTCGAATGGGTCCAGAACATTCAAGGGTTTATG 1184 Query 1202 TGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGACTTACATGACTCGCTCTTTCAAGGAC 1261 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1185 TGGGAGGAAGAGAAGGTGAACGAGGAGCTAAAGACTTACATGACTCGCTCATTCAAGGAC 1244 Query 1262 TTGAAAGAGATGTGCAAAACTCACTCTTGCGATCTCCGGATGGGAGCTTTCACACTCGGT 1321 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1245 TTGAAAGAGATGTGCAAAACTCACTCCTGCGATCTCCGGATGGGAGCTTTCACACTAGGT 1304 Query 1322 GTTAATCGTGTGGCTCAAGCTACCATTCTCAGAGGCTGGGGAGCTTAAAGATTATCTAAT 1381 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1305 GTTAATCGTGTGGCTCAGGCTACCATTCTCAGAGGCTGGGGAGCTTAA-GATTATCTAAT 1363 Query 1382 CTCTTATGCAATCTCTTTAGCAGCTCCTGAATAAGAATTGAGCCAAACTTTAATCTACTT 1441 || | || || || | | | ||| || | ||||| |||||||| |||| Sbjct 1364 CT---A-GC--TC-CT---G-A-------A-TAA-AACGG-GCCAACCTTTAATCCACTT 1402 Query 1442 TTTGTTTTATCCTCCTACTTTGGCTTAGAGGTCATCCTGAGTTAACAGAT 1491 |||||||| ||||| |||||||||||||||||| | |||||||||||||| Sbjct 1403 TTTGTTTTCTCCTC-TACTTTGGCTTAGAGGTCCTACTGAGTTAACAGAT 1451 > Ahg927924 jgi|Araly1|927924|scaffold_300381.1 Length=1276 Score = 1301 bits (704), Expect = 0.0 Identities = 1069/1249 (86%), Gaps = 10/1249 (1%) Strand=Plus/Plus Query 120 aaga-agaaga-agCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGC 177 |||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||| | Sbjct 5 AAGAGAGAAGAGAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCTAGCTTC 64 Query 178 TAGGCTTCTTGGTCTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAAT 237 ||||||||||||| | || || ||||||||||||||||||||||| |||||| |||| || Sbjct 65 TAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAGAGAT 124 Query 238 CAAGGTGGAATGTACCATACCGAAAGACGATGGTACACTAGCATCATTCGTTGGGTTCAG 297 ||||||||||||||||||||||||||| ||||| || || |||||||| ||||| ||||| Sbjct 125 CAAGGTGGAATGTACCATACCGAAAGATGATGGAACTCTTGCATCATTTGTTGGATTCAG 184 Query 298 AGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCTGAGGT 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 185 AGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAGAGGT 244 Query 358 TGATCCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAA 417 || ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| Sbjct 245 CGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGGCTAA 304 Query 418 GATTCCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTGATCCTAGCAAGCTCAGTATCTC 477 ||| |||||||||||||| |||||||| || |||||||| || ||| |||| |||||||| Sbjct 305 GATACCTTACGGAGGAGCCAAAGGAGGAATCGGTTGTGACCCGAGCCAGCTAAGTATCTC 364 Query 478 CGAGCTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATTCATGATCTCATTGGGATTCA 537 ||||| || || |||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 365 AGAGCTGGAACGTTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATCGGGATTCA 424 Query 538 TACTGATGTTCCAGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGA 597 ||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||| Sbjct 425 TACCGATGTTCCAGCTCCTGATATGGGAACCGGTCCTCAGACAATGGCTTGGATTCTTGA 484 Query 598 TGAATACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCT 657 ||||||||| || || ||||| |||||||||| || ||||| ||||||||||||||||| Sbjct 485 TGAATACTCAAAATTCCATGGGCACTCGCCTGCTGTGGTGACCGGAAAACCCATTGATCT 544 Query 658 TGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGC 717 |||||||| || || ||||| || ||||| |||||||||||| | |||| || ||||| Sbjct 545 CGGTGGATCTCTTGGAAGAGATGCTGCTACAGGAAGAGGAGTGTTATTTGCAACAGAAGC 604 Query 718 TTTGCTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTG-TCATCCAGGGATTTG 776 ||| || || || || ||||||| |||||| || ||||| || | | |||||||| |||| Sbjct 605 TTTACTCAATGAACATGGAAAGAGCATATCTGGACAGCGATTCGCT-ATCCAGGGTTTTG 663 Query 777 GTAATGTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCCG 836 | ||||||||||||||||| || | | ||||||||||||| ||||| |||||||| || | Sbjct 664 GAAATGTGGGTTCTTGGGCAGCGAGGTTGATAAGTGAAAAAGGTGGTAAGATTGTGGCGG 723 Query 837 TGAGTGACATTACCGGAGCAATCAAGAACAAGGATGGTATCGATATCCCG-GCCTTGCTC 895 ||||||| | || |||||||||||||||||| |||| || || ||| | | ||||| Sbjct 724 TGAGTGATGTCACAGGAGCAATCAAGAACAAGAATGGAATTGACATCTTGAGT-TTGCTG 782 Query 896 AAGCATACTAAAGAACACAGAGGTGTCAAAGGGTTTGATGGTGCAGATCCGATCGATCCA 955 ||||| | ||||| ||||||| ||||||||||||||||||| ||| | | |||||| Sbjct 783 GAGCATGCCGAAGAAAACAGAGGAATCAAAGGGTTTGATGGTGCTGATTCAACCGATCCT 842 Query 956 AACTCC-ATACTGGTTGAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCAT 1014 | | | || || || || ||||||||||| || ||||| ||||| || || |||||||| Sbjct 843 GA-TACGATTCTTGTCGAAGATTGTGATATTCTTGTCCCCGCAGCTCTAGGCGGTGTCAT 901 Query 1015 CAACAGGGAGAATGCGAATGAGATTAAAGC-AAAGTTCATCATAGAAGCAGCTAATCATC 1073 ||||||||| ||||| || || || ||||| ||| |||||||| |||| |||||||| | Sbjct 902 CAACAGGGAAAATGCAAACGAAATCAAAGCGAAA-TTCATCATTGAAGGTGCTAATCACC 960 Query 1074 CAACTGATCCGGACGCGGATGAGATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACA 1133 |||||||||| || || ||||||||| | || ||||||||||| || || ||||| || | Sbjct 961 CAACTGATCCTGAGGCTGATGAGATCTTGAGGAAGAAAGGTGTTGTAATCCTCCCAGATA 1020 Query 1134 TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGAACATTCAAG 1193 |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 1021 TATACGCAAACTCGGGAGGAGTTACTGTAAGTTACTTCGAGTGGGTTCAGAACATACAAG 1080 Query 1194 GCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGACTTACATGACTCGCTCTT 1253 | || |||||||| || || |||||||| | ||||||||||| || ||||||||| | Sbjct 1081 GGTTCATGTGGGATGAGGAAAAGGTGAATAAGGAGCTAAAGACATATATGACTCGCGGGT 1140 Query 1254 TCAAGGACTTGAAAGAGATGTGCAAAACTCACTCTTGCGATCTCCGGATGGGAGCTTTCA 1313 |||| ||||| ||||||||||| | |||||||| || ||||| || ||||||||||||| Sbjct 1141 TCAAAGACTTAAAAGAGATGTGTATGACTCACTCATGTGATCTTCGTATGGGAGCTTTCA 1200 Query 1314 CACTCGGTGTTAATCGTGTGGCTCAAGCTACCATTCTCAGAGGCTGGGG 1362 | || ||| |||| ||||| ||||||||||||||| ||||||||||||| Sbjct 1201 CTCTTGGTATTAACCGTGTCGCTCAAGCTACCATTATCAGAGGCTGGGG 1249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59687413915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5