BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18230.2
Length=2922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488691 jgi|Araly1|488691|fgenesh2_kg.6__1825__AT5G18230.1 4235 0.0
> Ahg488691 jgi|Araly1|488691|fgenesh2_kg.6__1825__AT5G18230.1
Length=2971
Score = 4235 bits (2293), Expect = 0.0
Identities = 2546/2665 (96%), Gaps = 29/2665 (1%)
Strand=Plus/Plus
Query 218 GATGGGTGCGAGCCGGAAATTACAAGGCGAGATAGATCGGGTGCTGAAGAAGGTTCAAGA 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATGGGTGCGAGCCGGAAATTACAAGGCGAGATAGATCGGGTGCTGAAGAAGGTTCAAGA 356
Query 278 AGGTGTTGATGTTTTCGACAGCATCTGGAACAAGTGGAATGTATATGATACAGACAATGT 337
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 357 AGGTGTTGATGTTTTCGACAGCATCTGGAACAA---G---GTATATGATACAGACAATGT 410
Query 338 TAATCAAAAGGAAAAGTTTGAGGCGGACTTGAAGAAGGAAATCAAGAAGCTGCAGCGGTA 397
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TAACCAAAAGGAAAAGTTCGAGGCGGACTTGAAGAAGGAAATCAAGAAGCTGCAGCGGTA 470
Query 398 TAGAGACCAGATCAAGACATGGATTCAGTCTAGTGAGATCAAAGATAAGAAAGTCAGTGC 457
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 471 TAGAGACCAGATCAAGACTTGGATTCAGTCCAGTGAGATCAAAGATAAGAAAGTCAGTGC 530
Query 458 ATCTTATGAGCAATCCCTGGTGGATGCTCGGAAGCTTATTGAGAAAGAGATGGAGAGGTT 517
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 531 ATCATATGAGCAATCCCTGGTTGACGCTCGGAAGCTTATTGAGAAAGAGATGGAGAGGTT 590
Query 518 TAAGATATGTGAAAAAGAGACCAAGACAAAAGCCTTCTCCAAGGAAGGACTGGGTCAGCA 577
|||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 591 TAAGATCTGTGAGAAAGAGACCAAGACAAAAGCTTTTTCCAAGGAAGGACTGGGTCAGCA 650
Query 578 ACCTAAAACTGACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTGAACAATGT 637
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 651 ACCTAAAACTGACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTAAACAATGT 710
Query 638 GGTGAGTGAACTGGAGTCGCAGATTGATAGCTTTGAAGCTGAGTTGGAAGGACTGTCTGT 697
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 711 GGTGAGTGAACTGGAGTCACAGATTGATAGCTTTGAAGCTGAATTGGAAGGACTGTCTGT 770
Query 698 CAAAAAAGGAAAGACAAGACCGCCCAGATTGACTCATCTTGAGACATCTATTACAAGACA 757
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 771 CAAAAAAGGAAAGACAAGACCGCCCAGATTGACTCATCTTGAGACATCTATCACAAGGCA 830
Query 758 CAAGGATCACATAATAAAGTTGGAACTGATCTTGAGGCTTCTGGACAATGATGAATTAAG 817
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CAAGGATCACATAATAAAGCTGGAACTGATCTTGAGGCTTCTGGACAATGATGAATTAAG 890
Query 818 TCCAGAACAAGTAAATGACGTCAAAGATTTTCTGGATGATTATGTTGAACGAAATCAGGA 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TCCAGAACAAGTAAATGACGTCAAAGATTTTCTGGATGATTATGTTGAACGAAATCAGGA 950
Query 878 TGATTTTGATGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCACTAGATGAGGT 937
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TGATTTTGACGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCACTAGATGAGGT 1010
Query 938 GGAGGGTCTTGAAGATCTAGTTACCGCTGGCCCACTTGTCAAGGGTACTCCTTTAAGCAT 997
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1011 GGAGGGTCTTGAAGATCTAGTTACTGCTGGCCCTCTTGTCAAGGGTACTCCTTTGAGCAT 1070
Query 998 GAAGAGTTCTTTGGCAGCGTCAGCATCTCAAGTTCGGAGCATAAGTTTGCCAACTCA-C- 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1071 GAAGAGTTCTTTGGCAGCGTCAGCATCTCAAGTTCGGAGCATAAGTTTGCCAACTCATCA 1130
Query 1056 -C-----A--T--CAAGAGAAAACAGAGGATACATCTTTACCGGATAGCAGTGCTGAGAT 1105
| | | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1131 TCAGAGTACTTCGCAAGAGAAAACAGAGGATCCATCTTTACCGGATAGCAGTGCTGAGAT 1190
Query 1106 GGTTCCAAAAACCCCTCCGCCAAAGAATGGTGCAGGCCTTCACTCAGCACCATCAACACC 1165
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1191 GGTTCCAAAAACCCCTCCCCCAAAGAATGGCGCAGGCCTTCACTCAGCACCATCAACACC 1250
Query 1166 TGCCGGAGGACGTCCAAGTTTGAACGTGCCTGCCGGTAATGTTTCAAATACATCAGTTAC 1225
|||||| ||||||||||||||||| ||||||||| ||||| |||||||| |||||||| |
Sbjct 1251 TGCCGGGGGACGTCCAAGTTTGAATGTGCCTGCCAGTAATATTTCAAATGCATCAGTTGC 1310
Query 1226 CTTATCAACTTCTATTCCTACTCAAACTTCCATAGAAAGCATGGGGAGTTTGTCTCCCGT 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CTTATCAACTTCTATTCCTACTCAAACTTCCATAGAAAGCATGGGGAGTTTGTCTCCCGT 1370
Query 1286 GGCTGCCAAGGAAGAAGACGCAACAACCTTGCCTTCTCGTAAACCACCCTCATCTGTTGC 1345
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1371 GACTGCCAAGGAAGAAGACGCAACAACATTGCCTTCTCGTAAACCACCCTCATCTGTTGC 1430
Query 1346 GGATACTCCATTGAGGGGCATTGGTAGAGTTGGTATCCCCAACCAACCCCAACCAAGCCA 1405
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1431 TGATACTCCATTGAGGGGCATTGGTAGAGTTAGTATCCCCAACCAGCCCCAACCAAGCCA 1490
Query 1406 GCCTCCGTCTCCTATTCCAGCTAACGGGTCTCGCATTAGTGCAACTTCAGCTGCTGAAGT 1465
|||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1491 GCCTCCGTCTCCAATTCCAGCTAATGGATCTCGCATTAGTGCAACTTCAGCAGCTGAAGT 1550
Query 1466 TGCAAAGAGAAATATAATGGGAGTTGAGAGCAACGTCCAACCTCTTACTTCTCCACTGAG 1525
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1551 TGCAAAGAGAAATATAATGGGAGTTGAGAGCAATGTCCAACCTCTAACTTCTCCACTGAG 1610
Query 1526 CAAAATGGTGTTGCCACCAACTGCAAAGGGTAATGATGGAACTGCCTCTGATAGCAACCC 1585
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1611 CAAAATGGTATTGCCACCAACTGCAAAGGGTAATGATGGAACTGCCTCTGATAGTAACCC 1670
Query 1586 TGGTGATGTTGCGGCTAGTATTGGTAGAGCTTTTTCACCATCTATTGTATCTGGTTCGCA 1645
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TGGTGATGTTGCGGCTAGTATCGGTAGAGCTTTTTCACCATCTATTGTATCTGGTTCGCA 1730
Query 1646 GTGGAGGCCTGGTAGTCCCTTTCAGAGTCAGAATGAAACGGTTCGTGGGAGAACTGAAAT 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 GTGGAGGCCTGGTAGTCCCTTTCAGAGTCAGAATGAAACGGTTCGTGGGAGAACTGAAAT 1790
Query 1706 AGCACCAGACCAAAGAGAGAAATTCTTACAGAGATTACAGCAAGTACAGCAAGGCCATGG 1765
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1791 AGCACCAGATCAAAGAGAGAAATTTTTACAGAGGTTACAGCAAGTACAGCAAGGCCATGG 1850
Query 1766 TAACCTCTTAGGCATACCTTCTTTATCTGGAGGAAACGAGAAGCAGTTTTCTTCACAACA 1825
||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1851 TAACCTCTTAGGCATGCCTTCTCTATCTGGAGGAAATGAGAAGCAGTTTTCTTCACAACA 1910
Query 1826 GCAAAATCCTCTTTTACAGCAGAGCTCTTCCATCTCTCCTCATGGAAGCTTGGGAATCGG 1885
|||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1911 GCAAAATCCTCTATTACAGCAGAGCTCTGCCATTTCTCCTCATGGAAGCTTGGGAATCGG 1970
Query 1886 AGTTCAGGCACCAGGTTTTAATGTCATGAGTTCTGCCTCCTTACAGCAGCAATCAAATGC 1945
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1971 AGTTCAGGCACCAGGTTTTAATGTCATGAATTCTGCCTCCTTACAGCAGCAGTCAAATGC 2030
Query 1946 CATGAGTCAACAATTGGGTCAGCAACCTTCTGTTGCAGATGTAGACCATGTCAGAAATGA 2005
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2031 CATGAGTCAACAATTGGGTCAGCAGCCTTCTGTTGCAGATGTAGACCATGTCAGAAATGA 2090
Query 2006 TGATCAATCC-CAGCAAAACTTACCTGATGATTCAGCTTCCATAGCAGCTTCAAAAGCTA 2064
||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2091 TGATCAA-CCACAGCAAAACTTACCTGATGATTCAGCTTCCATAACAGCTTCAAAAACTA 2149
Query 2065 TTCAAAGTGAGGATGACTCTAAAGTTCTATTTGATACTCCGTCGGGAATGCCCAGCTACA 2124
|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2150 TTCAAAATGAGGATGATTCTAAAGTTCTATTTGATACTCCGTCCGGAATGCCCAGCTACA 2209
Query 2125 TGTTGGATCCAGTACAAGTATCTAGCGGTCCTGATTTCTCTCCTGGACAACCTATACAAC 2184
|||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2210 TGTTGGATACAGTACAGGTATCTAGCGGTCCTGATTTCTCTCCTGGACAACCCATACAAC 2269
Query 2185 CGGGTCAATCTTCAAGTAGCCTCGGGGTCATTGGACGGAGAAGTAACTCTGAGTTAGGAG 2244
| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 2270 CAGGTCAATCTTCAAGTAGCCTTGGGGTCATTGGCCGGAGAAGTAACTCTGAATTAGGAG 2329
Query 2245 CCATTGGTGACCCTTCAGCTGTAGGGCCAATGCATGATCAAATGCACAATCTCCAGATGC 2304
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 CCATTGGTGACCATTCAGCTGTAGGGCCAATGCATGATCAAATGCACAATCTCCAGATGC 2389
Query 2305 TTGAAGCTGCTTTTTACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATT 2364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2390 TTGAAGCTGCTTTCTACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATT 2449
Query 2365 CTCCGAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATCATAA 2424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2450 CTCCGAGGAACCCAGCAATCACACCACAAACATTTCCCCAAACACAAGCACCAATCATAA 2509
Query 2425 ACAACCCTTTGCTCTGGGAACGGTTAGGCAGCGATGCTTATGGAACCGATACTTTGTTCT 2484
|||| ||||||||||||||||| ||||||||||| |||||||| || |||||||||||||
Sbjct 2510 ACAATCCTTTGCTCTGGGAACGTTTAGGCAGCGACGCTTATGGGACGGATACTTTGTTCT 2569
Query 2485 TTGCGTTCTACTATCAGCAGAACTCATACCAGCAATATCTTGCTGCAAAAGAGCTGAAGA 2544
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2570 TTGCGTTCTATTATCAGCAGAACTCATACCAGCAATATCTAGCGGCAAAAGAGCTGAAGA 2629
Query 2545 AACAGTCATGGAGATACCACAGGAAGTTCAACACTTGGTTTCAGAGACATAAAGAGCCAA 2604
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2630 AACAGTCATGGAGATACCACAGAAAGTTCAACACTTGGTTTCAGAGACATAAAGAGCCAA 2689
Query 2605 AGATTGCAACCGATGAATATGAACAAGGAGCCTACGTTTACTTCGATTTCCAAACCCCGA 2664
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 2690 AGATTGCAACCGATGAATATGAACAAGGAGCCTATGTTTACTTTGATTTCCAAACCCCCA 2749
Query 2665 AAGACGAGAATCAAGAAGGAGGATGGTGCCAAAGGATCAAAAACGAGTTCACATTTGAAT 2724
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 2750 AAGACGAGAATCAAGAAGGAGGATGGTGTCAGAGGATCAAAAATGAGTTCACATTTGAAT 2809
Query 2725 ACAGTTATCTTGAAGATGAACTCGTCGTATAGAATAGAGAGAGATG--CATGTTTGTATA 2782
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2810 ACAGTTATCTAGAAGATGAACTCGTCGTATAGAATAGAGAGAGATATACATGTTTGTATA 2869
Query 2783 TACTCTCGAGCAAGTGTGTTATTATTTCCTGCGACTATTT-GTACTCTTCTTTTCAATAA 2841
|||||| |||||||||| | ||| | |||||| |||||| |||||||||||||||||||
Sbjct 2870 TACTCTTGAGCAAGTGT-T-ATT-T--CCTGCGTCTATTTTGTACTCTTCTTTTCAATAA 2924
Query 2842 ACTAATTACTTTTAGTTTCAA-CAA 2865
||||||||||||||||||||| |||
Sbjct 2925 ACTAATTACTTTTAGTTTCAAACAA 2949
Score = 429 bits (232), Expect = 5e-119
Identities = 282/304 (93%), Gaps = 12/304 (4%)
Strand=Plus/Plus
Query 20 ATCCACAAAAGATCCAATCAAAATTCATTCA--C--CCATCATCGTTAGTTAC--ACATC 73
||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||| |
Sbjct 1 ATCCATAAAAGATCCAATCAAAATTCATTCATCCATCCATCATCGTTAGTTACATACA-C 59
Query 74 ATCGTCTTCTTCCTCTCGCTCCC-TCTGATAGCGAAACCCTAAAATACTCTCAGCTGCTA 132
||| ||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 60 ATCATCTCCTTCCTCTCGCTCCCTTCTGATAGCGAAACCCTAAAATACTATCAGCTGCTA 119
Query 133 CTTTCCGTAACCAAATCCCGACGAATTAACCCttttttttt-ttGGGGGGATAAAATCAT 191
||||||| |||||||| |||||||||||| |||||||||| || ||||||||||||
Sbjct 120 CTTTCCGAAACCAAATTCCGACGAATTAA--CTTTTTTTTTGTTTTTTGGATAAAATCAT 177
Query 192 CGGAGTCTCTTCTCTGGTTCGGCTGTGATGGGTGCGAGCCGGAAATTACAAGGCGAGATA 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CGGAGTCTCTTCTCTGGTTCGGCTGTGATGGGTGCGAGCCGGAAATTACAAGGCGAGATA 237
Query 252 GATCGGGTGCTGAAGAAGGTTCAAGAAGGTGTTGATGTTTTCGACAGCATCTGGAACAAG 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GATCGGGTGCTGAAGAAGGTTCAAGAAGGTGTTGATGTTTTCGACAGCATCTGGAACAAG 297
Query 312 -TGG 314
|||
Sbjct 298 ATGG 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110309349520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5