BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18240.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488696 jgi|Araly1|488696|fgenesh2_kg.6__1830__AT5G18240.4 2462 0.0
Ahg903224 jgi|Araly1|903224|Al_scaffold_0003_352 977 0.0
> Ahg488696 jgi|Araly1|488696|fgenesh2_kg.6__1830__AT5G18240.4
Length=1587
Score = 2462 bits (1333), Expect = 0.0
Identities = 1526/1614 (95%), Gaps = 34/1614 (2%)
Strand=Plus/Plus
Query 16 GAGAAAAAGAGCATAAATAAGGAAAGCAGCAAAGACATCTTCCCAAGTTGGTGGAGTTGC 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAAAAGAGCATAAATAAGGAAAGCAGCAAAGACATCTTCCCAAGTTGGTGGAGTTGC 60
Query 76 AAACCATAGTGTATCTCTGAACTGAGAGTAGCAGGTTGCAATTAAAAACTAAAGATTGTG 135
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct 61 TAACCATAGTGTATCTCTGAACTGAGGGCAGCAGGTTGCAATTAAAAACTAAAGATT-T- 118
Query 136 TCAGACAGACTTATGTATTACCACAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCG 195
| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 119 T--GTCAGACTTATGTATTACCAAAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCG 176
Query 196 AGAATGCCCATTTC-TTCTGAAAGGCATCCGTTCCTCAGAGGAAATGGCACAGGAGATTC 254
|||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 177 AGAATGCCCA-TTCATTCTGAAAGGAATCCGTTCCTCAGGGGAAATGGCACAGGAGATTC 235
Query 255 TGGACTCATTCTCTCCACTGATGCAAAGCCACGACTAAAATGGACTCCAGATCTTCACGA 314
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 236 TGGACTCATCCTCTCAACTGATGCAAAGCCAAGACTAAAATGGACTCCAGATCTTCACGA 295
Query 315 GAGATTTGTTGAAGCGGTCAACCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAAT 374
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAGATTTGTTGAAGCGGTCAATCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAAT 355
Query 375 CATGAAAGTCATGGGCATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAA 434
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CATGAAAGTCATGGGTATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAA 415
Query 435 ATATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATATAGGCTAAGCAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGT 475
Query 495 GATGACCATGGTAGAAGAAAACCCCCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAG 554
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 476 GATGACCATGGTAGAAGAAAACCCTCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAG 535
Query 555 CATTGGACCACAGCCGAGCATGAACTTACCCATAAGTGATGCCCTTCAAATGCAAATAGA 614
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 CATTGGACCACAGCCGACCATGAACTTGCCCATAAGTGATGCCCTTCAAATGCAAATAGA 595
Query 615 GGTCCAGAGACGGCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGA 674
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGTTCAGAGAAGGCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGA 655
Query 675 GGCTCAAGGAAAGTACCTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACA 734
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GGCTCAAGGAAAGTACTTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACA 715
Query 735 GAACCTAGGTGCAGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GAACCTAGGTGCAGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAA 775
Query 795 AGTATCAGCAGACTATCCAGACTCTAGTTTCCTCGAACCGAAAGAACTGCAGAATCTACA 854
|||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 776 AGTATCAGCAGAATATCCAGACTCTAGTTTCCTAGAACCGAAAGAACTCCAGAATCTACG 835
Query 855 CCATCAACAGATGCAAAAAACGTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACCTC 914
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 836 CCATCAACAGATGCAAACAGCCTATCCACCTAACTCCTCCCTGGACAGTTGCCTAACCTC 895
Query 915 AAGTGAAGGAA-CTCAGAAAGCCCCAAAGATGCTTGACAACAGACTGGGATTAAGAACAT 973
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAGTGAAGGAAAC-CAGAAAGCCCCAAAGATGCTTGACAACAGACTGGGATTAAGAACAT 954
Query 974 ATATTGGAGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAGCCATTCTTCCATAGAA 1033
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 955 ATATCGGAGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAACCATTCTTCCATCGAA 1014
Query 1034 TGGAGCTCACATGGGCAGAAGAAGAAAGCCTCAGAGAGAATCACAACAGGCCATATCTTT 1093
||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 1015 TGGAGCTCACATGGGCAGAAGAAGAAAGCCTCAGAGAGAGTAACAATAGGCCATATCTTT 1074
Query 1094 CAACAATGGTTAACAACGCAGAACCGAGAATCTCGTCTTCAAGAAGAAGTCCTGGAAGAT 1153
| ||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1075 CGACAATGGCTAACAACACAGAACCGAGAATCTCGTCATCAAGAAGAAGCCCTGGAAGAT 1134
Query 1154 TGTCAATAGGAGTGGGATTACATGAACACAGAGGAAGGAGTAGCAACAACAGTGAGTATA 1213
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1135 TGTCAATAGGAGTGGGATTACATGAACACAGAGGAGGGAGTAGCAACAACAGTGAGTATA 1194
Query 1214 CAGAAGAAAGATTCAACGAGAATAATGAAGATTGCAAGCTTGAAACACACACAAGAACAG 1273
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1195 CAGAAGAAAGATTCAACGAGAATGGTGAAGATTGCAAGCTTGAAACACACACAAGAACAG 1254
Query 1274 CTCTAGATCTTAACACACACGACGAAAACTATGGCACAACGCGTCCTAAACAGTTTGATT 1333
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1255 CTCTAGATCTTAACACACACGACGAAAACTATGGCACAACGCGTCCGAAACAGTTTGATT 1314
Query 1334 TAAATGGTTTCAGCTGGAATTGAGAAGAACAAATAAGCTTTAGAAGAGTGCAACAACCTT 1393
| ||||||||||||||||||||||||||||| | |||||| | |||| ||||||||||||
Sbjct 1315 TGAATGGTTTCAGCTGGAATTGAGAAGAACATAGAAGCTT-A-AAGACTGCAACAACCTT 1372
Query 1394 TTTATGATAATCACACAGGAAATGAAAAGCCTTTGATTTCCTTTGTTAGCTTGAGGGATT 1453
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1373 TTTATGATAATCACACAGGAAATGAAAAGCCTTTGATTTCCTTTGTTAGATTGAGAGATT 1432
Query 1454 CGTCTAAAAATTGAATTATTAGTCGAACTCAAAAGAGACATCTTGTGCAACAATGTACAA 1513
||||||||| || | || || | || |||||||||| ||||| ||
Sbjct 1433 CGTCTAAAAC---AA--A--AGA-GA-C--AA--------TCTTGTGCAAAAATGTGTAA 1473
Query 1514 CACTATTAATTTGCGTAGTTATGATCTCATC-ATATA-A-ATACAGATAAATTTACTAAC 1570
||| |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 1474 CACCATTAATTTGCGTAGTTATGATCTCATATATATATATATACAGATAAATTTACTAAC 1533
Query 1571 TTCATGGAAGATA-CTGAAATTCTTGAGAGAAGGACGTAAAGCTCCGTGCTTTT 1623
||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 1534 TTCATGGAAGATATC-GAAATTCTTGAGAGAAGGACGTAAAGTTCCGTGCTTTT 1586
> Ahg903224 jgi|Araly1|903224|Al_scaffold_0003_352
Length=1185
Score = 977 bits (529), Expect = 0.0
Identities = 878/1045 (84%), Gaps = 30/1045 (3%)
Strand=Plus/Plus
Query 148 ATGTATTACCACAACCAGCACCAAGGAAAGAGCATCCTCTCTTCATCGAGAATGCCCATT 207
||||||||||| ||||||||||||||||||| | |||||||||| |||||||||| ||
Sbjct 1 ATGTATTACCAAAACCAGCACCAAGGAAAGAACGTCCTCTCTTCTTCGAGAATGCATATA 60
Query 208 TCTTCTGAAAGGCATCCGTTCCTCAGAGGAAAT-GGCACAGGAGATTCTGGACTCATTCT 266
|||||||||||||||| ||||| ||||| ||| | | ||||||||||||||||||| ||
Sbjct 61 ACTTCTGAAAGGCATCCATTCCTTAGAGGGAATAGTC-CAGGAGATTCTGGACTCATCCT 119
Query 267 CTCCACTGATGCAAAGCCACGACTAAAATGGACTCCAGATCTTCACGAGAGATTTGTTGA 326
|| || ||||||||||| || ||||||||||||||||||||||| |||||||| | ||
Sbjct 120 TTCAACCGATGCAAAGCCGCGCCTAAAATGGACTCCAGATCTTCATGAGAGATTCATCGA 179
Query 327 AGCGGTCAACCAGCTTGGAGGAGGAGATAAGGCTACTCCTAAGACAATCATGAAAGTCAT 386
||||||||| || || || |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 180 AGCGGTCAATCAACTCGGTGGAGCAGATAAAGCTACCCCTAAGACAATCATGAAAGTCAT 239
Query 387 GGGCATTCCAGGCCTTACCTTATACCATCTCAAGAGTCATCTTCAGAAATATAGGCTAAG 446
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||
Sbjct 240 GGGGATTCCAGGCCTTACCTTATACCATCTCAAAAGTCATCTTCAGAAATACAGGTTGAG 299
Query 447 CAAGAATCTTAATGGACAAGCTAACAGCAGTTTAAACAAGACAAGTGTGATGACCATGGT 506
||||||||| || ||||||||||||||||| || ||||| | | || ||||||||||| |
Sbjct 300 CAAGAATCTCAACGGACAAGCTAACAGCAGCTTCAACAAAATAGGTATGATGACCATGTT 359
Query 507 AGAAGAAAACCCCCCTGAAGTAGACGAAAGTCACAGTGAGAGTTTAAGCATTGGACCACA 566
|||||| | | ||||| | |||||||||||| || |||||||||||||||||||||||
Sbjct 360 GGAAGAACAGACTCCTGATGCAGACGAAAGTCAAAGCGAGAGTTTAAGCATTGGACCACA 419
Query 567 GCCGAGCATGAACTTACCCATAAGTGATGCCCTTCAAATGCAAATAGAGGTCCAGAGACG 626
||| | || ||||| || ||| |||| || || || ||||||||||||||||| ||| |
Sbjct 420 GCCTAACAAGAACTCGCCAATAGGTGAAGCACTGCAGATGCAAATAGAGGTCCAAAGAAG 479
Query 627 GCTACACGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGAGGCTCAAGGAAA 686
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 GCTTCATGAGCAACTTGAGGTACAGCGACATTTGCAGCTCAGGATAGAGGCTCAAGGGAA 539
Query 687 GTACCTGCAATCGATTCTGGAGAAAGCACAAGAGACTCTTGGAAGACAGAACCTAGGTGC 746
||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 540 GTACCTGCAATCGGTTTTGGAGAAAGCACAAGAGACTCTTGGAAAACAGAACCTCGGTGC 599
Query 747 AGCTGGGATTGAAGCAACAAAAGCTCAACTCTCAGAATTAGTATCTAAAGTATCAGCAGA 806
||| ||||| ||||| | |||| ||||||||| ||||||||||||||||||||||||||
Sbjct 600 AGCAGGGATCGAAGCTGCCAAAGTTCAACTCTCGGAATTAGTATCTAAAGTATCAGCAGA 659
Query 807 CTATCCAGACTCTAGTTTCCTCGAACCGAAAGAACTGCAGAATCTACAC-CATCAACAGA 865
|| ||| |||||||| |||| ||||| |||||||| || || ||| | || |||||||
Sbjct 660 ATACCCAAACTCTAGTATCCTAGAACCAAAAGAACTTCAAAACCTATGCTCA-CAACAGA 718
Query 866 TGCAAAAAACGTATCCACCTA-ACTCCTCCCTGGACAGTTGCCTAACCTCAAGTGAAGGA 924
|||||| ||| |||||||| | | | ||| || || |||||||| |||||||| || |||
Sbjct 719 TGCAAACAACCTATCCACC-AGATTGCTCTCTAGAAAGTTGCCTGACCTCAAGCGAGGGA 777
Query 925 ACTCAGAAAGCCCC-AAAGATGCTTGA---CAACAGACTGGGATTAAGAACATATATTGG 980
|| |||||| || ||| ||||| || ||||||| | ||| ||||||||||| ||||
Sbjct 778 ACACAGAAAAACCTGAAA-ATGCTAGAGAACAACAGATTAGGACTAAGAACATATCTTGG 836
Query 981 AGATTCAACTTCAGAGCAGAAAGAGATAATGGAAGAGCCATTCTTCCATAGAATGGAGCT 1040
|||||||| || |||||||||||||| |||||||| | ||| ||||| |||| ||||||
Sbjct 837 TGATTCAACATCCGAGCAGAAAGAGATTATGGAAGAACAATTGTTCCAAAGAAGGGAGCT 896
Query 1041 CACATGGGCAGAAGAAGAAAGCCTCAGAGAGAATCACAACAGGCCATATCTTTCAACAAT 1100
||||||| |||||| | | | |||| ||||| || ||||||||| ||||
Sbjct 897 CACATGGACAGAAG--GT---C-TAAGAGGGAATC-CA--------TATCTTTCAGCAAT 941
Query 1101 GGTTAAC-AACGCAGAACCGAGAATCTCGTCTTCAAGAA-GAAGTCCTGGAAGATTGTCA 1158
||| | || ||||||| |||||||| | |||| ||| ||||||| || ||||| |||
Sbjct 942 GGTGAGTGAA-GCAGAACAAAGAATCTCATATTCA-GAAAGAAGTCCAGGTAGATTATCA 999
Query 1159 ATAGGAGTGGGATTACATGAACACA 1183
|||||||| ||||| || | |||||
Sbjct 1000 ATAGGAGTAGGATTGCACGGACACA 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5