BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18420.2 Length=1493 Score E Sequences producing significant alignments: (Bits) Value Ahg893763 jgi|Araly1|893763|Al_scaffold_0006_1759 2013 0.0 > Ahg893763 jgi|Araly1|893763|Al_scaffold_0006_1759 Length=1320 Score = 2013 bits (1090), Expect = 0.0 Identities = 1247/1322 (94%), Gaps = 14/1322 (1%) Strand=Plus/Plus Query 64 ATGATGATTATGAGGATTGAAGAGTCGGCGATTGTTTTGTCTCTGCTCAAATCGGATCTC 123 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGATTATGAAGATTGAAGAGTCGGCGATTGTTTTGTCTCTGCTCAAATCGGATCTC 60 Query 124 CGGCCGATGGAAGACGTTTTATCGGAATTCGACTCTAAGTTCGA--A-AGCGCTCGTTAC 180 ||||||||||| |||||||||||||||||| |||| |||||||| | ||| |||||| | Sbjct 61 CGGCCGATGGATGACGTTTTATCGGAATTCAACTCCAAGTTCGATGATAGCTCTCGTTTC 120 Query 181 CTCAGTGTCTGCAATTCTCTTTCCATGATGTTGCAGGATCAGCAGATGTTTAAGAATACT 240 |||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| Sbjct 121 TTCAGTGTCTGCAATTCTCTTTCCATGATGTTGCAGGATCAAAAGACGCTTCAGAATACT 180 Query 241 GAACGTCTAATTGCATTTGGTATCATATACCAGTGTTATTCTTCACAGAAGCCATCTTTC 300 ||||||||||||||||||| ||||||| | |||||||||||||| |||||||||||| || Sbjct 181 GAACGTCTAATTGCATTTGCTATCATACATCAGTGTTATTCTTCCCAGAAGCCATCTCTC 240 Query 301 AACCCGTTTTTATCTGAAATGATAAGTGCTGCTTGTAATGAACAGCTGGAAAAGTCTGAA 360 ||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| Sbjct 241 AACCCGTTTTTATCTGAAATGATGAGTGCTGCTTGTAATGAGCAACTAGAAAAGTCTGAG 300 Query 361 AGGGCATTTCTTCTCCACCTGTTACAATGGAATAGTTACAACAACGTGAAAGAGATTCTC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGGGCATTTCTTCTCCACCTGTTACAATGGAATAGTTACAACAACGTGAAAGAGATTCTC 360 Query 421 AAACTCTCAGCTGTTGATTATATCAGATCGTTTGATCCTTCAACTCATGATTTTCCGGAA 480 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAACAGTCAGCTGTTGATTATATCAGATCGTTTGATCCTTCAACTCATGATTTTCCGGAA 420 Query 481 CTAGGAGAGCTGCAACGAGAGTATGGCGACAAAGCCGATCCTGGACCATCTAGTCACATT 540 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 421 CTAGGAGAGCTGCAACGAGAGTATGGTGACAAAGCCGATCCTGGACCATCTAGTCACATT 480 Query 541 TTTGCAGACTATTCCCTGAAAAAGCTATTGCATGATCCTGATGTTCCTCGTGGGTGTGAT 600 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 481 TTTGCAGACTATTCCCTCAAAAAGCTATTGCATGATCCTGATGTTCCTCGTGGGTGCGAT 540 Query 601 CCTAACTCTCCAGAGT-T-TG----ATGTGCAAGCTGGAGTGAATCCCAGAATTGGATCT 654 |||||||||||||||| | || |||||||| |||||| ||| ||||||||||||||| Sbjct 541 CCTAACTCTCCAGAGTATGTGTTTGATGTGCAACCTGGAGGGAACCCCAGAATTGGATCT 600 Query 655 GGTGATAGGGATGAGGCACTATCTGGATTCTTAGGAAATTTGACAATGGGGGGATTAGGT 714 ||||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||| | Sbjct 601 GGTGATAGGGATGAGGCCCTGTCTGGATTCTTGGGAAATTCGACAATGGGGGGATTAGCT 660 Query 715 CCTAGGTGGATCCGTCCATGTCCACCAAGGTACCCAGTTCATCAGAGCGAGTTGCTTTGG 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CCTAGGTGGATCCGTCCATGTCCACCAAGGTACCCAGTTCATCAGAGCGAGTTGCTTTGG 720 Query 775 ATTGACCCTGATAACAAGCATGAGCTTGTTTGGGACGATAAAATGTGTGCTGATACTAGC 834 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 721 ATTGATCCTGATAACAAGCATGAGCTTGTTTGGGATGATAAAATGTGTGCTGATACAAGC 780 Query 835 AGTGGTGCAACAGTTAGAGACTTGCTTGTTAAGGGTTTAAAGGTGACACTTTCACCTACG 894 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AGAGGTGCAACAGTTAGAGACTTGCTTGTTAAGGGTTTAAAGGTGACACTTTCACCTACG 840 Query 895 GAGCAAGAGGACATCATTACAGAATTGGCAAATGACCCAAAGCTTGTCTTTCACTGCGGA 954 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||| Sbjct 841 GAGCAAGAGGACATCACTACAGAATTGGCAAATGACCCAAAGCTTGTCTATCACTGTGGA 900 Query 955 ATAACTCCACGGAAGCTGCCGCAATTAGTAGAGCACAATCCTCAGATAGCAGTTGAAATT 1014 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 901 ATAACTCCACGGAAGCTGCCGCAATTAGTAGAGCATAATCCTCAAATAGCAGTTGAGATT 960 Query 1015 CTCACCAAGTTGAATAACTCCACAGAGATTAATGACTATTATGA-AGCTCTAGGAAATAT 1073 ||||||||||||| ||| ||| |||| ||| |||||||| | | |||||||| || ||| Sbjct 961 CTCACCAAGTTGATTAAATCCCCAGATATTGCTGACTATTTT-ACAGCTCTAGTAAGTAT 1019 Query 1074 GGACATGAGCCTGCACTCAATGGAAGTTGTGAATAGGCTCACAACTGCAGTTGAACTTCC 1133 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1020 GGACATGAGCCTGCACTCAATGGAAGTTGTGAATAGGCTCACTACTGCAGTTGAACTTCC 1079 Query 1134 CAAGGACTTCATACGGATGTACATCACTAATTGCATATCGTCTTGTGAGAACGCTAAGCA 1193 |||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 1080 CAAGGAATTCATACGGATGTACATAACTAATTGCATATCGTCTTGTGGGAACGCTAAGCA 1139 Query 1194 GCAAGACAAATACATGCAGAATAGGCTTGTACGGCTTGTTTGCGTCTTCTTGCAAAGCTT 1253 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1140 GCAAGACAAATACATGCAGAATAGGCTTGTACGGCTTGTTTGCGTATTCTTGCAAAGCTT 1199 Query 1254 AATTCGTAACAAGATCATCAACGTGAAGGATCTATTCATAGAAGTTCAAGCTTTCTGCAT 1313 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 AATTCGTAACAACATCATCAACGTGAAGGATCTATTCATAGAAGTTCAAGCTTTCTGCAT 1259 Query 1314 TGAGTTTTCTCGGGTTCGAGAAGCAGCTGGTCTCTTCAGGCTTTTGAAA-CAATTGGA-T 1371 ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| | Sbjct 1260 TGAGTTTTCTCGGATTCGAGAAGCAGCTGGTCTCTTCAGGCTTTTGAAAACA-TTGGAAT 1318 Query 1372 GA 1373 || Sbjct 1319 GA 1320 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55878389415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5