BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18430.1 Length=1292 Score E Sequences producing significant alignments: (Bits) Value Ahg893764 jgi|Araly1|893764|Al_scaffold_0006_1760 1607 0.0 > Ahg893764 jgi|Araly1|893764|Al_scaffold_0006_1760 Length=1038 Score = 1607 bits (870), Expect = 0.0 Identities = 983/1039 (95%), Gaps = 2/1039 (0%) Strand=Plus/Plus Query 147 ATGTCTGGTCCGA-TAGTGGTGGAGGGACGTGCTTTTTTCGTGTTCGGTGACTCGCTCGT 205 |||||| ||| || | |||| |||| ||||||||||||||||||||| |||||||| || Sbjct 1 ATGTCTAGTCTGACCA-TGGTCGAGGCACGTGCTTTTTTCGTGTTCGGCGACTCGCTTGT 59 Query 206 CGACAGTGGCAACAACAACTATCTGGTGACAACTGCACGTGCCGACTCTCCACCGTATGG 265 ||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct 60 CGACAGTGGGAACAACAACTATCTGGTGACGACTGCACGTGCCGACTCTCTGCCTTATGG 119 Query 266 AATCGATTTTCCAACTCGGAGACCAACCGGCCGGTTTTCCAACGGTCTTAACATTCCAGA 325 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 120 AATCGATTTTCCTACTCGGAGACCAACCGGCCGGTTTTCCAACGGTCTAAACATACCAGA 179 Query 326 TCTTATCAGTGAGGCAATCGGTAACGAAGAGCCACCGTTACCTTACCTTAGTCCAGAGCT 385 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 TCTTATAAGTGAGGCAATCGGCAACGAAGAGCCACCGTTACCTTACCTTAGTCCAGAGCT 239 Query 386 AAGGGGCCGGAGTCTTCTTAACGGTGCTAATTTCGCCTCCGCTGGTATCGGAATTCTCAA 445 ||||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 240 AAGGGGCCGAAGGCTTCTTAACGGTGCCAATTTCGCCTCGGCCGGTATCGGAATTCTCAA 299 Query 446 TGATACCGGATTTCAATTCATCAACATTATAAGAATGTACCAACAACTCGATTACTTCCA 505 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CGATACCGGATTTCAATTCATCAACATTATAAGAATGTACCAACAACTCGATTACTTCCA 359 Query 506 ACAATACCAACAACGTGTGAGTCGCTTGATTGGGAAACCGCAAACTCAGCGGCTCGTGAG 565 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 360 ACAATACCAACAACGTGTGAGTCGCTTGATAGGGAAACCACAAACTCAGCGGCTCGTGAG 419 Query 566 TCAAGCGCTTGTATTAATCACGGTCGGTGGAAACGATTTTGTGAACAACTATTTCTTGTT 625 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 420 TCAAGCACTTGTATTAATCACGGTCGGTGGAAACGATTTCGTGAACAACTATTTCTTGTT 479 Query 626 TCCATATTCCGCTAGATCACGCCAATTCACTCTACCGGATTACGTCCGACTCCTAATTTC 685 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 480 TCCATATTCCGCTAGATCACGCCAATTCTCTCTACCGGATTACGTCCGACTCCTAATTTC 539 Query 686 TGAATACaaaaaaaTACTATTGAGGTTAAATTCACTTGGAGTGGGTCGAGTTCTAGTGAC 745 ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| Sbjct 540 TGAATACAAAAAAATACTACTGAGATTAAATTCACTTGGAGTTGGTCGAGTTCTAGTGAC 599 Query 746 AGGAGCTGGACCACTAGGATGTGCACCGGCCGAACTGGCGAGATCAGGTACGTCGAATGG 805 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 600 CGGAGCTGGACCACTAGGATGTGCACCGGCCGAACTGGCGAGATCAGGCACGTCGAATGG 659 Query 806 AAGATGCTCGGCCGAGCTACAACGAGCTGCATCTCTATATGATCCTCAGCTACTTCAAAT 865 ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| Sbjct 660 GAGATGCTCGGCCGAGCTACAACGAGCTGCGTCTTTATATGATCCACAGCTACTTCAAAT 719 Query 866 GATAAATGAACTTAACaaaaaaaTTGGGAGAAATGTGTTTATTGCTGCTAACACTAACCA 925 |||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 720 GATAAATGCACTTAACAAAAAGATTGGAAGAAATGTGTTTATTGCTGCAAACACTAACCA 779 Query 926 AATGCAAGAGGATTTTCTAAGCACTCCACGAAGATATGGATTTGTAACATCGAAGGTTGC 985 ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 780 AATGCAAGAGGATTTTCTAAGCACTCCACGAAGATATGGATTTATAACGTCGAAGGTTGC 839 Query 986 TTGTTGCGGACAAGGGCCGTACAATGGGATGGGTTTGTGTACGGTTCTATCAAACTTGTG 1045 |||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct 840 TTGTTGCGGACAAGGGCCGTACAATGGGATGGGTTTGTGTACAGTACTATCGAATTTGTG 899 Query 1046 TCCGAACCGTGAGTTATACGTCTTTTGGGATGCGTTTCATCCGACTGAGAAAGCAAACCG 1105 ||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 900 TCCGAACCGAGAGCTATACGTGTTTTGGGACGCGTTTCATCCGACTGAGAAAGCAAACCG 959 Query 1106 CATGATAGTCCGACATATCTTGACCGGTACCACCAAGTATATGAACCCCATGAACCTTAG 1165 ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 960 CATGATAGTTCGTCATATCTTGACCGGTACCTCCAAGTATATGAACCCCATGAACCTTAG 1019 Query 1166 CTCTGCTCTTGCCCTATGA 1184 ||||||||||||||||||| Sbjct 1020 CTCTGCTCTTGCCCTATGA 1038 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48301735839 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5