BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18490.1 Length=1996 Score E Sequences producing significant alignments: (Bits) Value Ahg941373 jgi|Araly1|941373|scaffold_601917.1 2586 0.0 Ahg477694 jgi|Araly1|477694|fgenesh2_kg.3__395__AT3G04350.1 1037 0.0 > Ahg941373 jgi|Araly1|941373|scaffold_601917.1 Length=1703 Score = 2586 bits (1400), Expect = 0.0 Identities = 1601/1700 (94%), Gaps = 5/1700 (0%) Strand=Plus/Plus Query 196 TCTCGAAATCAAAACGATGTTTTGCGATTGCTTCTACTGGAATAAAGGTTTCTCCGAGTT 255 |||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||| Sbjct 7 TCTCGAAATC-AAACGATGTTTTGCGATTGCTTCTACTGGAACAAATCAATCACCGAGTT 65 Query 256 GGAATCGGAATCGTCCGAGTCAAAGCCCTTCTCGCTTCCATCTCCTCTTCCTCAATGGCC 315 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 66 GGAATCGGAATCGTCCGAGTCAAAGCCCTTCTCGCTTCCGTCTCCTCTTCCTCGATGGCC 125 Query 316 ACAAGGCAGAGGTTTTGCTACTGGAAGGATAAGTCTTGGAGAAATCCAAGTGGTGAAAGT 375 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 126 ACAAGGCAGCGGTTTTGCTACTGGAAGGATAAATCTTGGAGAAATCCAAGTGGTGAAAGT 185 Query 376 CACCGAGTTCGATAGAGTTTGGAAATGTGGCACCTCGCGTGGTAAATTAAGATGCGCATC 435 |||||||||||||||||||||||||||||||| ||||||||||||| || ||||| || Sbjct 186 CACCGAGTTCGATAGAGTTTGGAAATGTGGCAGGTCGCGTGGTAAATCGAGTTGCGCCTC 245 Query 436 TTTTTACAAACCTGTGGGGATACCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCC 495 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 TTTTTACAAGCCCGTGGGGATACCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCC 305 Query 496 AAACAATCAGCCATTGAGAGGCTTTGTTCTTGCAGCTCGGGCTAACAAGCCCGGTCATCT 555 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 306 AAACAATCAGCCATTGAGAGGCTTCGTTCTTGCAGCTCGGGCTAACGAGCCCGGTCATCT 365 Query 556 AGCGGATGATCATCGCCCTCCTTTGAAAAAGCCTTTGAATTATTCTTTAGTTTGGAGTTC 615 |||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||| Sbjct 366 TGCGGATGAGCATCGCCCTCCCTTGAAAAAACCTGTGAATTATTCTTTAGTTTGTAGTTC 425 Query 616 AGATTCAGATTGCTACTTCTGGTTACCTAATCCTCCTGTTGGTTATAGAGCCGTGGGAGT 675 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 426 AGATTCAGATTGCTACTTCTGGTTACCTAATCCTCCGGTTGGTTATAGAGCCGTGGGAGT 485 Query 676 TATTGTCACTGATGGATCAGAGGAGCCTGAAGTTGATGAAGTGAGATGTGTACGAGAGGA 735 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 486 TATTGTCACTGATGGATCAGAGGAGCCTGAAGTTGATGAAGTGAGATGTGTAAGAGAGGA 545 Query 736 TCTTACAGAGAGCTGTGAAACCGGTGAGAAGGTTCTTGGTGTAGGATCTTTTAATGTTTG 795 |||||| ||||| |||||||||||||||||||||||||| | |||||||||||||| || Sbjct 546 TCTTACGGAGAGTTGTGAAACCGGTGAGAAGGTTCTTGGCATGGGATCTTTTAATGTCTG 605 Query 796 GAGCACTAAACCTTGCGAGA-GAGGTATTTGGTCTCGTGGAGTGGAGGTTGGGTCATTCG 854 |||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 606 GAGCACTAAACCATGCGAGACG-GGTATTTGGTCTCGGGGAGTGGAGGTTGGGTCATTCT 664 Query 855 TTTGCTCTACTAATGATCTGTCTTCTGATAATAAAGCCGCCATGAACATTGCGTGTTTGA 914 ||||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||| Sbjct 665 TTTGCTCTACTAATGATATGTCTTCTAATTATAAAGCCGCCATGAAGATTGCGTGTTTGA 724 Query 915 AAAATCTCGACCCGAGCCTACAAGGTATGCCAAATCTTGATCAGGTCCATGCACTTATTC 974 |||||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||| Sbjct 725 AAAATCTCGATCCGAGCCTACATGGCATGCCAAATCCTGACCAGGTCCATGCACTTATTC 784 Query 975 ACCATTATGGACCGATGGTCTACTTCCATCCCGAAGAGACTTACATGCCTTCGTCTGTGC 1034 | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 785 AGCATTATGGACCGATAGTCTACTTCCATCCCGAAGAGACTTACATGCCTTCGTCCGTGC 844 Query 1035 CATGGTTCTTTAAAAACGGAGCTTTGTTGCACCGGTTTGGGAAATCTCAAGGCGAACCGA 1094 ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| Sbjct 845 CATGGTTCTTTAAAAACGGAGCTTTGTTGTACCGGTCTGGGAAATCGCAAGGCGAACCGA 904 Query 1095 TTAACTCA-GCTGGCTCGAACTTGCCTGCGGGTGGAGAAAACGATGGGAGCTTCTGGATT 1153 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 TTAACT-ATACTGGCTCGAACTTGCCTGCGGGTGGAGAAAACGATGGGAGCTTCTGGATT 963 Query 1154 GATCTCCCTGAAGATGAAGAAGTTAGAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCA 1213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 964 GATCTCCCTGAAGATGAAGAAGTTAGAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCA 1023 Query 1214 GAGCTTTACGTCCACGTGAAACCCGCGCTTGGCGGGATTTTCACGGACGTTGTAATGTGG 1273 |||||||| |||||||||||||| || ||||||||||||||||| ||| |||| |||||| Sbjct 1024 GAGCTTTATGTCCACGTGAAACCAGCACTTGGCGGGATTTTCACAGACATTGTGATGTGG 1083 Query 1274 ATATTCTGTCCATTTAATGGTCCAGCCACTCTCAAAATCGGGCTTCTCACGGTACCAATG 1333 || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 1084 ATTTTCTGTCCATTTAATGGCCCAGCCACTCTCAAAATCGGGCTTCTCACCGTACCCATG 1143 Query 1334 AACCGCCTTGGAGAGCATGTTGGTGATTGGGAACATTTCACATTCCGGATAAGCAACTTC 1393 |||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||| Sbjct 1144 AACCGCATTGGAGAGCATGTTGGTGATTGGGAACACTTCACATTCAGGATAAGCAATTTC 1203 Query 1394 AACGGCGATCTTACACAGATGTTCTTCTCACAGCATAGTGGTGGAGGATGGGTTGATGTA 1453 |||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1204 AACGGCGAGCTTACACAAATGTTCTTCTCACAACATAGCGGTGGAGGATGGGTTGATGTA 1263 Query 1454 TCGGATCTTGAGTTTGTCAAAGGAAGCAATAAACCGGTTGTGTACTCATCCAAACACGGT 1513 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1264 TCGGATCTTGAGTTTGTCAAAGGAAGCAACAAACCGGTTGTGTACTCATCCAAACACGGC 1323 Query 1514 CACGCTAGTTTCCCACACCCGGGAATGTATCTTCAAGGCCCGTCGAAGCTCGGGATTGGA 1573 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1324 CACGCGAGTTTCCCACACCCCGGAATGTACCTTCAAGGCCCGTCGAAGCTCGGGATTGGA 1383 Query 1574 GTAAGAAACGATGTTGCGAAAAGCAAGTATATGGTGGATTCTAGTCAAAGGTACAGAATC 1633 || ||||||||||||||||||||||||||| |||||||||||||||||| || |||||| Sbjct 1384 GTGAGAAACGATGTTGCGAAAAGCAAGTATGCGGTGGATTCTAGTCAAAGATATAGAATC 1443 Query 1634 GTAGCAGCAGAGTATTTAGGCGAAGGAGCGGTTTCAGAACCGTACTGGCTGCAGTTTATG 1693 || ||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1444 GTGGCAGCGGAGTATTTAGGCGAAGGAGCGGTTTCAGAACCGTGCTGGCTGCAGTTCATG 1503 Query 1694 AGAGAATGGGGACCAACTATAGTATATGATTCAGCAGCTGAGATCAATAAGATCATTGAT 1753 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 1504 AGAGAATGGGGACCAACTATAGTGTACGATTCTGCAGCTGAGATCAATAAGATCATTGAT 1563 Query 1754 CTACTTCCACTGATTCTGAGGAATTCTTTTGAGAGTCTGTTTCCTATTGAGCTTTACGGT 1813 || |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1564 CTTCTTCCATTGATTGTGAGGTATTCTTTTGAGAGTCTGTTTCCTATTGAGCTTTACGGC 1623 Query 1814 GAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATTTGTTGA 1873 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1624 GAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATGTGTTGA 1683 Query 1874 AAACAGAGCTCCTCTGTTTC 1893 |||||||||||||||||||| Sbjct 1684 AAACAGAGCTCCTCTGTTTC 1703 > Ahg477694 jgi|Araly1|477694|fgenesh2_kg.3__395__AT3G04350.1 Length=2219 Score = 1037 bits (561), Expect = 0.0 Identities = 1365/1736 (79%), Gaps = 123/1736 (7%) Strand=Plus/Plus Query 221 GATTGCTTCTACTGGAATAAAGGTTTCTCCGAGTTGGAATCGGAATCGTCCGAGTCAAAG 280 ||||| || ||| ||| | ||| |||| | |||||| ||||||||||| ||| ||||| Sbjct 325 GATTGTTTTTACCGGAGCAGAGGACTCTCTGTGTTGGATTCGGAATCGTCTGAGCCAAAG 384 Query 281 CCCTTCTCGCTTCCATCTCCTCTTCCTCAAT-GGCCACAAGGCAGAGGTTTTGCTACTGG 339 ||||||||||||||||||||||||||| | | |||||||||| | ||||||||| || || Sbjct 385 CCCTTCTCGCTTCCATCTCCTCTTCCT-AGTTGGCCACAAGGTAAAGGTTTTGCCACGGG 443 Query 340 AAGGATAAGTCTT-GGAGAAATCCAAGTGGTGAAAGTCACCGAGTTCGATAGAGTTTGGA 398 ||| |||| ||| |||||||| ||||||||||| ||||| ||||| |||||||||||| Sbjct 444 AAGAATAAA-CTTAGGAGAAATAGAAGTGGTGAAAATCACCAAGTTCCATAGAGTTTGGA 502 Query 399 AATGTGGCACCTCGCGTGGTAAATTAAGATGCGCATCTTTTTACAAA-CCTGTGGGGATA 457 | || | |||| || |||| || ||| ||| | ||||||| | || | || || Sbjct 503 GCTCTGATTCATCGCACGGCAAATCAAAATGTGCAACATTTTACAGAGCC-GAGGAAATT 561 Query 458 CCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCCAAACAATCAGCCATTGAGAGGC 517 |||||||||||||||||| ||||||| || ||||| |||| | ||||||| |||||||| Sbjct 562 CCAGAAGGTTTCCATTGCTTTGGTCACTATTGCCAACCAACCGATCAGCCCTTGAGAGG- 620 Query 518 TT-TGTTCTTGCAGCTCGGGCTAACAA-GCCCGGTCATCTAGCGGATGATCATCGC-CCT 574 || ||| |||||||||||| ||| ||| ||| | ||| | || ||||||| || | || Sbjct 621 TTATGTACTTGCAGCTCGGTCTAGCAAAGCC-G-TCAA-T-GCTGATGATC-TCCCACC- 674 Query 575 CCTTTGAAAAAGCCTTTGAATTATTCTTTAGTTTGGAGTTCAGATTCAGA------T--- 625 ||| |||||||||| ||| ||||||||||||||||||| |||||||||| | Sbjct 675 CCT--GAAAAAGCCTGTGAGTTATTCTTTAGTTTGGAGTGCAGATTCAGAGAAAAATGGC 732 Query 626 --TG-CTACTTCTGGTTACCTAATCCTCCTGTTGGTTATAGAGCCGTGGGAGTTATTGTC 682 || ||| |||||| ||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 733 AGTGGCTATTTCTGGCTACCTAATCCTCCGGTTGGTTACAGAGCAATGGGAGTTATTGTA 792 Query 683 ACTGATGGATCAGAG-GAGCCTGAAGTTGATGAAGTGAGATGTGTACGAGAGGATCTTAC 741 || |||| ||| | || |||||| || || || ||||||||| |||||||||| || Sbjct 793 ACCCCTGGACCAG-GTGAACCTGAACCAGAGGAGGTTAGATGTGTAAGAGAGGATCTCAC 851 Query 742 AGAGAGCTGTGAAACC---G-G-TGAGA----AGGT---T-CTT-G--G--T--GTA-GG 780 |||||| ||||||||| | | ||| | |||| | ||| | | | | | || Sbjct 852 AGAGAGTTGTGAAACCTCTGAGATGATACTTGAGGTGGGTTCTTCGAAGAATTCGAACGG 911 Query 781 ----A-T-CT--TTTAA-TGTTTGGAGCACTAAACCTTGCGAGAGAGGTATT-TGGTCTC 830 | | || ||| | ||| |||||||| ||||||||||||||| || || || | Sbjct 912 CTCTAGTTCTCCTTTTAGTGTGTGGAGCACCCGACCTTGCGAGAGAGGGATGCTG-TCAC 970 Query 831 GTGGAGTGGAGGTTGGGTCATTCGTTTGCT-CTACTAATGATCTGTCTTCTGATAATAAA 889 || || | |||||||||||| |||||| | ||| |||||||||||||||||| | Sbjct 971 AAGGTGTAGCTGTTGGGTCATTCTTTTGCTGC-ACTTATGATCTGTCTTCTGATAGGACG 1029 Query 890 GCCGCCATGAACATTGCG-TGTTTGAAA-AATCTCGACCCGAGCCT-ACAAG-GTATGCC 945 | | || ||| |||| | || || ||| ||||| || |||| ||| ||| | | ||||| Sbjct 1030 GTC-CC-TGAT-ATTG-GATGCTT-AAAGAATCTTGATCCGA-CCTTACACGCG-ATGCC 1082 Query 946 AAATCTTGATCAGGTCCATGCACTTATTCACCA-TTATGGACCGATGGTCTACTTCCATC 1004 |||||| || ||||||||||| ||||| | || || ||||| | ||||||||||| | Sbjct 1083 AAATCTCGACCAGGTCCATGCGGTTATTGAACACTTC-GGACCAACAGTCTACTTCCA-C 1140 Query 1005 CC-GAAGAGACTTACATGCCTTCGTCTGTGCCATGGTTCTTTAAAAACGGAGCTTTGTTG 1063 || |||||| ||||||||||||| || || | |||||||||||| || |||||||||||| Sbjct 1141 CCAGAAGAGGCTTACATGCCTTCATCCGTACAATGGTTCTTTAAGAATGGAGCTTTGTTG 1200 Query 1064 CACCGGTTTGGGAAATCTCAAGG-CGAACCGATTAACTC-AGCTGGCTCGAACTTGCCTG 1121 |||||| |||||||| ||||| | ||||||||||||| | | |||||||||||||||| Sbjct 1201 TACCGGTCAGGGAAATCACAAGGTC-AACCGATTAACTCCA-CGGGCTCGAACTTGCCTG 1258 Query 1122 CGGGTGGA-GAAAACGATG-GGAGCTTCTGGATTGATCT-CCCTGAAGATGAAGAAGTTA 1178 | || ||| | || ||| ||| |||||||| ||||| ||| ||||| ||||||| | Sbjct 1259 CTGGAGGATGCAAT-GATATGGAA-TTCTGGATAGATCTTCCC-GAAGACGAAGAAGCAA 1315 Query 1179 -GAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCAGAGCTTTACGTCCACGTGAAACCC 1237 || ||||||| ||||| ||||| | |||||||| ||||||||||| || |||||||| Sbjct 1316 AGA-GTAATCTCAAGAAAGGAAACCTTGAAAGCTCGGAGCTTTACGTTCATGTGAAACCA 1374 Query 1238 GCGCTTGGCGGGAT-TTTCACGGACGTTGTAATGTGGATATTCTGTCCATTTAATGGTCC 1296 || ||||| || | ||| || ||| |||| |||||||| ||||| || |||||||| || Sbjct 1375 GCACTTGGTGGAACCTTT-ACCGACATTGTGATGTGGATTTTCTGCCCCTTTAATGGCCC 1433 Query 1297 AGCCACTCTCAAAATCGGGCT-TCTCACGGTACCAATGAACCGCCTTGGAGAGCATGTTG 1355 ||||| |||||||||||||| | ||||| |||| |||| |||| | ||||| ||||| | Sbjct 1434 GGCCACGCTCAAAATCGGGCTAT-TCACGTTACCTATGACCCGCATAGGAGAACATGTCG 1492 Query 1356 GTGATTGGGAACATTTCACATTCCGGATAAGCAACTTCAAC-GGCGATCTTACACAGATG 1414 ||||||||||||||||||| ||||| ||| |||||||| | || || ||| || ||| Sbjct 1493 GTGATTGGGAACATTTCACTTTCCGCATATGCAACTTCT-CTGGTGAGCTTTGGCAAATG 1551 Query 1415 TTCTTCTCACAGCATAGTGGTGGAGGATGGGTTGATGTATCGGATCTTGAGTTTGTCAAA 1474 || ||||| |||||||||||||| || |||||||||| ||| ||| |||||||||| ||| Sbjct 1552 TTTTTCTCTCAGCATAGTGGTGGTGGTTGGGTTGATGCATCAGATATTGAGTTTGTGAAA 1611 Query 1475 GGAAGCAATAAACCGGTTGTGTACTCATCCAAACACGGTCACGCTAGTTTCCCACACCCG 1534 | | || ||||||| |||||||||||| |||||||| || || |||||||| |||||| Sbjct 1612 G-AT--AACAAACCGGCTGTGTACTCATCTAAACACGGACATGCGAGTTTCCCTCACCCG 1668 Query 1535 GGAATGTATCTTCAAGGCCCGTCGAAGCTCGGGATTGGAGTAAGAAACGATGTTGCGAAA 1594 |||||||| || |||||| |||| ||||||||||||||||| |||||||||||||| ||| Sbjct 1669 GGAATGTACCTCCAAGGCTCGTCAAAGCTCGGGATTGGAGTCAGAAACGATGTTGCAAAA 1728 Query 1595 AGCAAGTATATGGTGGATTCTAGTCAAAGGTACA-GAATCGTAGCAGCAGAGTATTTAGG 1653 |||||||| || |||||||| || |||||||| || | |||||||| ||||||||||| Sbjct 1729 AGCAAGTACATTGTGGATTCAAGCCAAAGGTATGTGATT-GTAGCAGCTGAGTATTTAGG 1787 Query 1654 CGAAGGAGCGGTT-TCAGAACCGTACTGGCTGCAGTTTATGAGAGAATGGGGACCAACTA 1712 ||||||| || | ||| |||| |||| | |||| |||||| |||||||| || || | Sbjct 1788 TAAAGGAGCTGTGAT-AGAGCCGTGCTGGTTACAGTATATGAGGGAATGGGGTCCGACCA 1846 Query 1713 TAGTATATGATTCAGCAG-CTGAGATCAATAAGATCATTGA-TCTACTTCCACTGATTCT 1770 | | ||||||||| | | ||||||||||||||||||| || ||| ||||| || || | Sbjct 1847 TTGCATATGATTCGGG-GTCTGAGATCAATAAGATCAT-GAATCTTCTTCCTTTGGTTGT 1904 Query 1771 GAGGAATTCT-T-TTGAGA-----GTC--T--GTTTCCTATTGAGCTTTACGGTGAGGAA 1819 ||| |||| | |||||| || | |||||| |||| ||||| || || ||| Sbjct 1905 TAGG--TTCTCTATTGAGAACATTGTTGATTTGTTTCCCATTGCTCTTTATGGAGAAGAA 1962 Query 1820 GGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATTTGTTGAAA 1875 |||||||| || ||||||||||| ||||| |||||||||||||| || || ||||| Sbjct 1963 GGTCCTACGGGGCCAAAGGAGAAAGATAACTGGGAAGGAGATGAGATGTGCTGAAA 2018 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75037782650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5