BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18630.1 Length=1585 Score E Sequences producing significant alignments: (Bits) Value Ahg488750 jgi|Araly1|488750|fgenesh2_kg.6__1884__AT5G18630.1 1703 0.0 Ahg893788 jgi|Araly1|893788|Al_scaffold_0006_1784 1352 0.0 > Ahg488750 jgi|Araly1|488750|fgenesh2_kg.6__1884__AT5G18630.1 Length=1472 Score = 1703 bits (922), Expect = 0.0 Identities = 1056/1122 (94%), Gaps = 3/1122 (0%) Strand=Plus/Plus Query 140 CTTTTGGTTGCTGAAATCTCTTTCGGGTTTTGTCCTAATCCTCATTAGTTTGGGTTTCGT 199 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 108 CTTTTGGTTGCTGAAATCTCTTTCGGGTTTTGTCCTAATCATCGTTAGTTTGGGTTTCGT 167 Query 200 GAGTCTCGTTTTATAAGAACATGGGACAAAAGAGATTGTTGTTCTTGCTGGCAGTTTTTA 259 ||||||||| ||| |||||||||||||||||||||| ||| ||||||||||| ||||| Sbjct 168 GAGTCTCGTATTACAAGAACATGGGACAAAAGAGATGGTTCCTCTTGCTGGCAATTTTTG 227 Query 260 CTTTTCTTGTTTCATCTTCATATGGTAGAGGTGTTCTCAAGTTGAAGAGCGATGATGATC 319 ||| |||| |||| | ||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 228 CTTGTCTTCTTTCCTTTTCATGTGGTAGAGGTGTTCTCAAGTTGAAAAGCGATGATGATC 287 Query 320 GACCTGTTTACAACCATACGCTTGCCGTCACGCTTGTGGAGTATGCCTCTGCGGTCTATG 379 |||||||||||||||||||||||||| | || |||||||||||||| |||||||| |||| Sbjct 288 GACCTGTTTACAACCATACGCTTGCCATAACACTTGTGGAGTATGCTTCTGCGGTTTATG 347 Query 380 AGTCTGATTTGACAAAACTCTTCACTTGGACGTGCGAAAGATGCAATGGTTTGACAAAGG 439 |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 348 AGTCGGATTTGACAAAACTCTTCACTTGGACTTGCGAAAGATGCAATGGTTTTACAAAGG 407 Query 440 ATTTCGAAGTAATAGAGGTCATATTTGACGTTGAACACTGCTTACAGGCGTATGTTGGGG 499 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 408 ATTTCGAAGTAATAGAGATCATATTTGACGTTGAACACTGCTTACAGGCGTATGTTGGGG 467 Query 500 TGGCTAAGGATTTGAATGCTATCATTATTGCATTTCGGGGAACTCAAGAACACAGCATAC 559 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 TGGCTGAGGATTTGAATGCTATCATTATTGCATTTCGGGGAACTCAAGAACACAGCATAC 527 Query 560 AAAATTGGGTCTCAGACTTGTTCTGGAAACAGCTCGATCTGAATTACCCTGACATGCCAG 619 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 528 AAAATTGGGTCTCAGACTTGTTCTGGAAACAGCTCGATCTGAATTACCCTGATATGCCAG 587 Query 620 ATGCAATGGTGCACCATGGCTTTTACAGTGCTTATCACAATACAACTTTACGGCCTGCGG 679 ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| | Sbjct 588 ATGCAATGGTGCACCATGGCTTTTATAGTGCTTATCACAATACAACTGTACGTCCTGCAG 647 Query 680 TTTTGGATGCAATAACACGAGTGAAAAAAGTCTACGGGGCGAACATCAACATCATAGTGA 739 ||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||| || | Sbjct 648 TTTTGGATGCAATAACACGAGCGAAACAAGTCTATGGGACGAACATCAACATCATTGTCA 707 Query 740 CCGGTCATTCAATGGGAGGAGCCATGGCTTCCTTTTGTGGTCTAGACCTAGTTGTAAATG 799 | |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| Sbjct 708 CTGGTCATTCAATGGGAGGAGCCATGGCTTCCTTTTGTGGGCTAGACTTAGTCGTAAATG 767 Query 800 AAGGTGAAGAAAACGTACAGGTTATGACATTTGGGCAACCTCGTGTTGGGAATGCCGCTT 859 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 AAGGAGAAGAAAACGTACAGGTTATGACATTTGGGCAACCTCGTGTTGGGAATGCCGCTT 827 Query 860 TTGCATCTTATTACAGTTTGCTTGTGCCCAATACCTTCCGGATCACGCATGACCGTGATA 919 |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| Sbjct 828 TTGCATCTTATTACAGTTTGCTTGTGCCTAATACCTTCAGAATCACGCATGACCGTGATA 887 Query 920 TGGTTCCTCATCTGCCTCCTTACTATTACCATTTCCCTCAAAAAACATACCACCACTTCC 979 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 TGGTTCCCCATCTGCCTCCTTACTATTACCATTTCCCTCAAAAAACATACCACCACTTCC 947 Query 980 CAACAGAGGTGTGGGTGAAAGATTTCAGTTTTTCGAATTTTGTTCTTTTTGGTTTGGAGA 1039 |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| Sbjct 948 CAACAGAGGTGTGGGTTAAAGAATTCAGTTTTTCGAACTTTGTTCTTTTTGGTTTGGAGA 1007 Query 1040 AAGTTTGTGACAACACTGGTGAAGATCCTACTTGCAGCAGATCGGTAAGGGGAAATAGCA 1099 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 1008 AAGTTTGTGACAACACCGGTGAAGATCCTACTTGCAGCAGATCGGTGAGGGGAACTAGCA 1067 Query 1100 TTTCTGACCATTTAAGGTACTTTGGGGTAGAGTTGAAGTGTGAGAGTTGGAGACAGTGCA 1159 |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| Sbjct 1068 TTTCTGACCATTTAAGGTACTTTGGGGTGGAGTTGATGTGTGAGAGTTGGAGACAATGCA 1127 Query 1160 GCATAGTGATGAATCAAGATATGGAGCGTTACAGCAGGAAAGATTCAAGGGGTAACTTAT 1219 ||||||||||||| || || |||||||||||||||||||||||||||| ||||||| ||| Sbjct 1128 GCATAGTGATGAACCAGGAGATGGAGCGTTACAGCAGGAAAGATTCAAAGGGTAACATAT 1187 Query 1220 TCCTCTCGCGGACAGTTCCT-CCTAAGGACGTAGTC-AAAAC 1259 |||| ||||||||||||||| || ||| ||| | || ||||| Sbjct 1188 TCCTGTCGCGGACAGTTCCTTCC-AAGTACGCAATCGAAAAC 1228 Score = 126 bits (68), Expect = 4e-28 Identities = 89/98 (91%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 9 ATATAATAATATATAAGCTCGCCGTATAATTTTCTTGCCGGGAATAATCTCCGATCATCG 68 |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 14 ATAT-AT-ATATATAAG-TCGCCGTATAATTTTCTTGCCGGGAATAATCTCCGATCATCG 70 Query 69 TCGGAAATTTCCGAATT-GTTGTAAAAGAAGTCCAATT 105 ||||||||||| || | ||||||||||| || ||||| Sbjct 71 CCGGAAATTTCC-AACTCGTTGTAAAAGACGTTCAATT 107 > Ahg893788 jgi|Araly1|893788|Al_scaffold_0006_1784 Length=1110 Score = 1352 bits (732), Expect = 0.0 Identities = 976/1092 (89%), Gaps = 23/1092 (2%) Strand=Plus/Plus Query 215 AGAACATGGGACAAAAGAGATTGTTGTTCTTGCTGGCAGTTTTTACTTTTCTTGTTTCAT 274 |||| |||||||||||||||| ||| |||||||||||| ||||| ||| |||| |||||| Sbjct 32 AGAATATGGGACAAAAGAGATGGTTCTTCTTGCTGGCATTTTTTGCTTGTCTTTTTTCAT 91 Query 275 CTTCATATGGTAGAGGTGTTCTCAAGTTGAAGAGCGATGATGATCGACCTGTTTACAACC 334 |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 92 CTTCATGTGGTAGA---GTTCTCAAGTTGAAGAGTGATGATGATCGACCTGTTTACAACC 148 Query 335 ATACGCTTGCCGTCACGCTTGTGGAGTATGCCTCTGCGGTCTATGA-GTCTGATTTGACA 393 | ||||||||| | || |||||||||||| | |||||||||||| | |||||||||| || Sbjct 149 ACACGCTTGCCATAACACTTGTGGAGTATACTTCTGCGGTCTAT-ATGTCTGATTTGTCA 207 Query 394 AAACTCTTCACTTGGACGTGCGAAAGATGCAATGGTTTGACAAAGGATTTCGAAGTAATA 453 |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 208 GAACTCTTCACTTGGACATGCGAAAGATGCAATGGTTTGACAAAGGGTTTCGAAGTAATA 267 Query 454 GAGGTCATATTTGACGTTGAACACTGCTTACAGGCGTATGTTGGGGTGGCTAAGGATTTG 513 ||| | ||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 268 GAGATAATAGTTGACGTTGAGCACTGCTTACAGGCGTATGTTGGGGTGGCTAAGGATTTA 327 Query 514 AATGCTATCATTATTGCATTTCGGGGAACTCAAGAACACAGCATACAAAATTGGGTCTCA 573 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 328 AATGCTATCATCATTGCATTTCGGGGAACTCAAGAACACAGCATACAAAATTGGGTCTCA 387 Query 574 GACTTGTTCTGGAAACAGCTCGATCTGAATTACCCTGACATGCCAGATGCAATGGTGCAC 633 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 388 GACTTGTTCTGGAAACAGCTCGATTTGAATTACCCTGATATGCCAGATGCAATGGTGCAC 447 Query 634 CATGGCTTTTACAGTGCTTATCACAATACAACTTTACGGCCTGCGGTTTTGGATGCAATA 693 ||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||| || Sbjct 448 CATGGATTTTATAGTGCTTATCACAACACAACTGTACGGCCTGCGGTTTTGGATGCAGTA 507 Query 694 ACACGAGTGAAA-AAAGTC-TACGGGGCGAA-CATCAACATCATAGTGACCGGTCATTCA 750 | ||||| ||| ||| || || |||||||| | ||| |||||| ||||| ||||||||| Sbjct 508 AAACGAGC-AAAGAAA-TCATATGGGGCGAATC-TCAGCATCATGGTGACTGGTCATTCA 564 Query 751 ATGGGAGGAGCCATGGCTTCCTTTTGTG-GTCTAGACCTAGTTGTAAATGAAGGTGAAGA 809 |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| Sbjct 565 ATGGGAGGAGCCATGGCTTCCTTTTGTGCG-CTAGACCTAGTTGTAAATGAAGATGAAGA 623 Query 810 AAACGTACAGGTTATGACATTTGGGCAACCTCGTGTTGGGAATGCCGCTTTTGCATCTTA 869 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 624 AAACGTACAGGTTATGACATTTGGGCAACCCCGTGTTGGGAATGCTGCTTTTGCATCTTA 683 Query 870 TTACAGTTTGCTTGTGCCCAATACCTTCCGGATCACGCATGACCGTGATATGGTTCCTCA 929 ||||| |||||||||||| ||||||||| |||||| ||||||| |||||| |||||||| Sbjct 684 TTACAATTTGCTTGTGCCTAATACCTTCAGGATCATACATGACCATGATATAGTTCCTCA 743 Query 930 TCTGCCTCCTTACTATTACCATTTCCCTCAAAAAACATACCACCACTTCCCAACAGAGGT 989 ||| |||||||||||| | | ||||||||||||||||||||| ||||||||||||||||| Sbjct 744 TCTACCTCCTTACTATCATCTTTTCCCTCAAAAAACATACCATCACTTCCCAACAGAGGT 803 Query 990 GTGGGTGAAAGAT-TTCAGT-TTTTCGAATTTTGTTCTTTTTGGTTTGGAGAAAGTTTGT 1047 |||||||| ||| || ||| |||| |||| ||||| || |||| | |||||||||||| Sbjct 804 GTGGGTGACAGAACTT-AGTGTTTT-GAATATTGTTATTCGTGGTGTAGAGAAAGTTTGT 861 Query 1048 GACAACACTGGTGAAGATCCTACTTGCAGCAGATCGGTAAGGGGAAATAGCATTTCTGAC 1107 |||||||| |||||||||||||| |||||||||||||||| ||||| |||||| || ||| Sbjct 862 GACAACACCGGTGAAGATCCTACGTGCAGCAGATCGGTAATGGGAAGTAGCATATCCGAC 921 Query 1108 CATTTAAGGTACTTTGGGGTAGAGTTGAA-GTGTGAGAGTTGGAGACAGTGCAGCATAGT 1166 ||||||| ||||||||| || ||||| || | |||||| ||||||||| |||| |||||| Sbjct 922 CATTTAACGTACTTTGGAGTGGAGTT-AATGGGTGAGACTTGGAGACAATGCAACATAGT 980 Query 1167 GATGAATCAAGATATGGAGCGTTACAGCAGGAAAGATTCAAGGGGTAACTTATTCCTCTC 1226 ||||| || || |||||| |||||||||||||||||||| ||||||| ||||||| || Sbjct 981 GATGAGCCATGAGATGGAGAATTACAGCAGGAAAGATTCAAAGGGTAACATATTCCTGTC 1040 Query 1227 GCGGACAGTTCCT-CCTA-AGGACGTAGTCAAAACAAGTTCTCTATCGAAAACCGGAATC 1284 ||||||||||||| || | || ||||| |||||||| | ||| |||||||||||| Sbjct 1041 GCGGACAGTTCCTTCC-ACAG-ACGTAACCAAAACAAAAAGTATATTTAAAACCGGAATC 1098 Query 1285 TCTAGTCTGTAG 1296 |||||||| ||| Sbjct 1099 TCTAGTCTATAG 1110 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59382691955 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5