BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18650.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941391 jgi|Araly1|941391|scaffold_601935.1 1875 0.0
> Ahg941391 jgi|Araly1|941391|scaffold_601935.1
Length=1142
Score = 1875 bits (1015), Expect = 0.0
Identities = 1102/1142 (96%), Gaps = 14/1142 (1%)
Strand=Plus/Plus
Query 329 gcttttctcctcctgttctcATGGAAGCTTCACCCAATGATCGACTTCATTTTGGCAAAA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTTTTCTCCTCCTGTTCTCATGGAAGCTTCACCCAATGATCGACTTCATTTTGGCAAAA 60
Query 389 TGGGTTTCGGGTGTAAGCATTACAAGAGGAGATGCCAAATCAGAGCTCCATGTTGCAACG 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGGTTTCGGGTGTAAGCATTACAAGAGGAGATGCCAAATCAGAGCTCCATGTTGCAACG 120
Query 449 AAGTCTTCGATTGTCGCCATTGTCACAACGAGAGCACTAGCACATTGCGCAATATCTACG 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGTCTTCGATTGTCGCCATTGTCACAACGAGAGCACTAGCACATTGCGCAATATCTACG 180
Query 509 ACCGTCACGATCTTGTTCGTCAAGACGTTAAACAAGTGATTTGTTCTGTTTGCGATACAG 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCGTCACGATCTTGTTCGTCAAGACGTTAAACAAGTGATTTGTTCTGTTTGCGATACAG 240
Query 569 AGCAGCCGGCAGCTCAAGTTTGTTCGAATTGTGGTGTCAACATGGGAGAATATTTTTGCA 628
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCAGCCGGTAGCTCAAGTTTGTTCGAATTGTGGTGTCAACATGGGAGAATATTTTTGCA 300
Query 629 GCATCTGCATATTCTATGATGATGATACTGAAAAACAACAGTTTCATTGCGATGACTGTG 688
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 301 ACATCTGCAAATTCTATGATGATGATACTGAAAAACAACAGTTCCATTGCGATGAGTGTG 360
Query 689 GAATTTGCAGAGTTGGTGGGCGTGAGAATTTCTTCCATTGCAAGAAGTGTGGATCTTGTT 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAATTTGCAGAGTTGGTGGGCGTGAGAATTTCTTCCATTGCAAGAAGTGTGGATCTTGTT 420
Query 749 ATGCGGTTGGTCTGCGCAACAACCATCGCTGCGTTGAGAATTCAATGCGTCATCACTGTC 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGCGGTTGGTCTGCGCAACAACCATCGCTGCGTTGAGAATTCAATGCGTCATCACTGTC 480
Query 809 CCATTTGTTACGAGTACCTTTTTGACTCTCTAAAGGACACAAATGTGATGAAATGCGGGC 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 CCATTTGTTACGAGTACCTTTTTGACTCTCTAAAGGACACAAATGTGATGAAATGCGGAC 540
Query 869 ACACAATGCACGTAGAATGCTACAACGAGATGATCAAACGTGACAAGTTTTGTTGTCCAA 928
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 ACACAATGCACTTAGAATGCTACAACGAGATGATCAAACGTGACAAGTTTTGTTGTCCGA 600
Query 929 TTTGCTCGAGGTCAGTGATTGATATGTCTAAAACATGGCAGAGACTCGATGAAGAGATCG 988
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 TTTGCTCGAGGTCAGTGATTGATATGTCTAAAACATGGCAGAGACTGGATGAAGAGATCG 660
Query 989 AAGCCACTGCTATGCCTTCAGATTACCGTGACAAGAAGGTTTGGATACTTTGCAACGATT 1048
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 661 AAGCCACTGCTATGCCTTCAGATTACCGCGACAAGAAGGTTTGGATACTATGCAACGATT 720
Query 1049 GTAACGACACAACAGAAGTGCACTTCCACATAATCGGACAGAAATGTGGACATTGCAGAT 1108
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 721 GTAACGACACAACAGAAGTGTACTTCCACATAATAGGACAGAAATGTGGACATTGCAGAT 780
Query 1109 CATACAACACACGAGCGATTGCGCCTCCTGTTCTTCCTCAATGACAAAACCAAGATCTTC 1168
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTACAACACACGAGCCATCGCGCCTCCTGTTCTTCCTCAATGACAAAACCAAGATCTTC 840
Query 1169 CC-ATGTATTGCCTCCAGAAAGC-AAGCAAGAA-CTTTTTGTTGCTaaaaaaaCTGAGGC 1225
|| |||||||||||||| ||||| || ||| || ||||||||||| ||||||||||||||
Sbjct 841 CCCATGTATTGCCTCCAAAAAGCTAA-CAA-AAGCTTTTTGTTGC-AAAAAAACTGAGGC 897
Query 1226 ATA--GATTGATGATCATAACaaagaaagaaaaagaaaaagaTTGATGATCAATTTGATC 1283
| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 898 AAAAAGATTGATGATCATAACAAAGAAAAAAAAAGAAAAAGATTGATAATCAATTTGATC 957
Query 1284 ATTGGTCACAAAAGCAAAACACACATTTGTCTTCTTCATTTGATTTGTTGTTGTTCTTAT 1343
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATTGGTCACAAAAACAAAACACACATTTGTCTTCTTCATTTGATTTGTTGTTGTTCTTAT 1017
Query 1344 ACTGTTACATTTTTCCATTTGTGTTTGGGTGTTGGAAATGCGAGGATTATGTATAATATA 1403
||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1018 ACTGTTATATTTTACCATTTGTGTTTGGGTGTTGGCAA-GCGAGGATTATGTATAATATA 1076
Query 1404 --C-TCTATAT-T-CTTGATCCAGGAAAAGTTACCTGGATAATATGTTTTCAGGGATTTT 1458
| ||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1077 GTCCTCTATATATTCTTGACCCAGGAAAAGTTACCTGGATGATATGTTTTCAGGGATTTT 1136
Query 1459 TT 1460
||
Sbjct 1137 TT 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5