BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18660.1 Length=1448 Score E Sequences producing significant alignments: (Bits) Value Ahg488753 jgi|Araly1|488753|fgenesh2_kg.6__1887__AT5G18660.1 2218 0.0 > Ahg488753 jgi|Araly1|488753|fgenesh2_kg.6__1887__AT5G18660.1 Length=1414 Score = 2218 bits (1201), Expect = 0.0 Identities = 1348/1419 (95%), Gaps = 9/1419 (1%) Strand=Plus/Plus Query 34 CTTCACTTTCTCGCACTTTCCCTCTCATTTTCCCGATCAT-AGAAACAGCATTGTACAGA 92 |||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||| Sbjct 1 CTTCACTTTCTCGCACTTTCCCTCTCATTTTCCCGATCGTCA-AAACAACATTGTACAGA 59 Query 93 GATTTCAAAGAATGTCACTTTGCTCTTCCTTCAACGTATTCGCTTCCTACTCACCAAAAC 152 |||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||| Sbjct 60 GATTTCAAAGCATGTCACTTTGTTCTTCGTTCAACGTTTTCGCTTCATACTCACCAAAAC 119 Query 153 CCAAAACCATCTTCAAAGATTCCAAATTCATTTCACAATTTCAGGTAAAGTCGTCTCCTT 212 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 120 CCAAAACCATCTTCAAAGATTCCAAATTCATTGCACAATTTCAGGTAAAGTCGTCTCCTT 179 Query 213 TAGCTTCAACATTCCACACAAATGAATCCTCA-ACGAGTCTTAAGTATAAGAGAGCGAGA 271 |||||||||||||| | || ||||||||||| | || |||||||| ||| ||||||||| Sbjct 180 TAGCTTCAACATTCAAAACCCATGAATCCTCAGA-GACTCTTAAGTTTAAAAGAGCGAGA 238 Query 272 CTCAAACCAATTTCATCTCTAGACTCGGGAATTTCAGAAATCGCTACATCACCTTCATTC 331 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 239 CTCAAACCAATTTCATCTCTAGACTCGGGAATTTCAGAAATCGCTACATCGTCTTCCTTC 298 Query 332 AGGAACAAAAGCCCTAAAGATATAAACGTTTTAGTGGTTGGTTCAACTGGGTACATAGGT 391 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 299 AGGAACAAAAGCCCTAAAGATATAAACGTTTTAGTGGTTGGTTCAACTGGATACATAGGT 358 Query 392 AGATTTGTAGTGAAAGAGATGATCAAAAGAGGGTTCAATGTGATTGCTGTTGCGAGAGAG 451 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 359 AGATTCGTAGTGAAAGAGATGATCAAAAGAGGGTTCAATGTGACTGCTGTTGCGAGAGAG 418 Query 452 AAGAGTGGGATTAGAGGCAAA-AACGACAAGGAAGAGACTTTGAAGCAATTACAAGGCGC 510 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 419 AAGAGTGGGATTAGAGG-AAAGAACGACAAGGAAGAGACTTTGAAGCAATTACAAGGCGC 477 Query 511 CAATGTGTGTTTCTCTGATGTTACTGAGTTAGATGTTCTTGAGAAATCTATTGAGAATCT 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 CAATGTGTGTTTCTCTGATGTTACTGAGTTAGATGTTCTTGAGAAATCTATTGAGAATCT 537 Query 571 AGGATTTGGTGTTGATGTTGTTGTTTCCTGTCTCGCTAGTCGTAATGGAGGGATTAAAGA 630 ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 538 AGGGTTTGGTATTGATGTTGTTGTGTCCTGTCTCGCTAGTCGTAATGGAGGGATTAAAGA 597 Query 631 TTCGTGGAAGATTGATTATGAAGCTACCAAAAACAGTCTTGTAGCTGGGAAGAAGTTTGG 690 ||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 598 TTCTTGGAAGATTGATTATGAAGCTACCAAGAATAGTCTTGTAGCTGGGAAGAAGTTTGG 657 Query 691 TGCTAAGCATTTTGTTTTGCTCTCTGCGATTTGTGTGCAGAAGCCTTTACTGGAGTTTCA 750 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 658 TGCTAAGCATTTCGTTTTGCTCTCTGCGATTTGTGTGCAGAAGCCTTTGTTGGAGTTTCA 717 Query 751 GAGAGCGAAACTGAAGTTCGAAGCAGAGTTGATGGATTTGGCTGAGCAACAAGACTCTAG 810 |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| || Sbjct 718 GAGAGCGAAACTGAAGTTCGAAGCCGAGTTGATGGATTTGGCGGAGAAACAAGACTCGAG 777 Query 811 CTTTACATACAGCATTGTGAGACCAACGGCTTTTTTCAAGAGCTTAGGTGGTCAAGTTGA 870 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 CTTTACTTACAGCATTGTGAGACCAACGGCTTTTTTCAAGAGCTTAGGTGGTCAAGTTGA 837 Query 871 GATTGTGAAAGATGGGAAACCTTACGTGATGTTTGGAGATGGTAAGCTATGCGCTTGTAA 930 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 838 GATTGTGAAAGATGGGAAACCTTATGTGATGTTTGGAGATGGTAAGCTATGCGCTTGTAA 897 Query 931 ACCGATCAGCGAACAAGATTTAGCAGCGTTTATAGCGGATTGCGTGTTGGAAGAGAACAA 990 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || Sbjct 898 ACCGATCAGCGAACAGGATTTAGCAGCGTTTATAGCGGATTGTGTGTTGGAAGAGAATAA 957 Query 991 GATCAATCAAGTTTTGCCAATTGGTGGACCAGGCAAGGCATTAACGCCATTAGAGCAAGG 1050 ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 958 GATCAATCAAGTTTTACCAATTGGTGGACCAGGGAAGGCGTTAACGCCATTGGAGCAAGG 1017 Query 1051 AGAGATTCTGTTTAAGATTCTTGGGAGAGAGCCTAAGTTCTTGAAAGTACCTATCGAGAT 1110 ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 AGAGATTTTGTTTAGGATTCTTGGGAGAGAGCCTAAGTTCTTGAAAGTACCTATCGAGAT 1077 Query 1111 TATGGATTTTGTGATTGGTGTTCTCGATTCTATTGCAAAGATCTTTCCTTCGGTTGGAGA 1170 |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1078 TATGGATTTTGTGATTGGGGTTCTTGATTCTATTGCAAAGATTTTTCCTTCGGTTGGAGA 1137 Query 1171 GGCTGCCGAATTTGGGAAGATTGGAAGGTATTACGCCGCAGAGAGTATGTTGATTCTTGA 1230 |||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1138 GGCTGCTGAGTTTGGGAAGATCGGGAGGTATTACGCCGCAGAGAGTATGTTGATTCTTGA 1197 Query 1231 TCCAGAGACTGGAGAGTATAGCGAGGAGAAGACACCGAGTTACGGGAAAGACACGCTTGA 1290 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1198 TCCAGAGACTGGAGAGTATAGCGAGGAGAAGACACCGAGTTATGGGAAAGACACGCTTGA 1257 Query 1291 GGATTTCTTTGCGAAAGTGATCAGAGAAGGCATGGCGGGTCAAGAACTCGGTGAACAGTT 1350 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1258 GGATTTCTTTGCGAAAGTGATCAGAGAAGGAATGGCAGGTCAAGAACTCGGTGAACAGTT 1317 Query 1351 CTTCTAGTATGAATTGTTTTTGTGCGAAATGAGTTTG-CTGTGTAGTTTGTAACTGATGA 1409 |||||||| |||| | |||| ||| ||||||||||| ||||||||||||||||||||| Sbjct 1318 CTTCTAGTGTGAAAT-TTTTA-TGCAAAATGAGTTTGGCTGTGTAGTTTGTAACTGATGT 1375 Query 1410 GATTATAAATATAAAACCTGTGAATTTGAGAGATTCGTT 1448 |||||||||||||||| |||||||||||||||||| ||| Sbjct 1376 GATTATAAATATAAAATCTGTGAATTTGAGAGATTTGTT 1414 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54164328390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5