BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18670.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941394 jgi|Araly1|941394|scaffold_601938.1 2573 0.0
Ahg317500 jgi|Araly1|317500|fgenesh1_pm.C_scaffold_3000516 547 9e-155
Ahg945815 jgi|Araly1|945815|scaffold_702044.1 302 8e-81
Ahg940479 jgi|Araly1|940479|scaffold_601023.1 158 2e-37
> Ahg941394 jgi|Araly1|941394|scaffold_601938.1
Length=1700
Score = 2573 bits (1393), Expect = 0.0
Identities = 1599/1698 (94%), Gaps = 16/1698 (1%)
Strand=Plus/Plus
Query 177 TGTGAAATGGAAGTTTCAGTGATTGGAAATCCTCAAGCGAGGATCTGCAGAGCAGAATTA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 TGTGAAATGGAAGTTTCAGTGATTGGAAATCCTCAAGCGAGGATCTGCAGAGCAGAATTA 74
Query 237 GCTTACAGAGAGCTTGGATTTAGATTTGGCTCTGATGTAATCTCCGGTGAATCGAGAAAT 296
|||||||||||||| || |||||||||||||| | |||||||||||||||||||||||||
Sbjct 75 GCTTACAGAGAGCTCGGCTTTAGATTTGGCTCCGTTGTAATCTCCGGTGAATCGAGAAAT 134
Query 297 AGGGTTAGTTTCTGCAACCAAAGCTCTAAATGGAAAGAGATCGCGATACGTTGCTCTTC- 355
||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 135 AGGGTTACTTTCTGCAACCAAAGCTCTAAATGGAAGGAGATCGCGATTCGTTGCTC-TCA 193
Query 356 GAGATCTGTCAAATGTGAAGCCATCGTCTCCGATGACGCTTCTCCGTTTCTCAAATCCAC 415
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 194 CAGATCTGTCAAATGTGAAGCCATCGTCCCCGATGACGCTCCTCCGTTTCTCAAATCCGC 253
Query 416 TCCAAAATCTAAATCGCTCGAGAGTGTAAAATTATTTGTTGGGCTTCCGTTAGACACAGT 475
|||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 254 CCCAAAACCTAAATCGCTCGAGAGTGTGAAATTATTTGTTGGGCTTCCACTGGACACAGT 313
Query 476 TTCAGACTGCAACAATGTGAATCACTTGAAAGCTATTACAGCTGGGCTTAAAGCTTTGAA 535
||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 314 TTCAGACTGCAACAACGTGAATCACTTGAAAGCCATCACAGCTGGGCTCAAAGCTTTGAA 373
Query 536 GCTACTTGGTGTAGAAGGTATTGAGTTACCTATCTTT-TGGGGAGTTGTTGAGAAAGAAG 594
|||||||||||||||||| ||||||||||| || ||| ||||||||||||||||| ||||
Sbjct 374 GCTACTTGGTGTAGAAGGCATTGAGTTACCAAT-TTTCTGGGGAGTTGTTGAGAAGGAAG 432
Query 595 CTGCTGGGAAATATGAATGGTCTGGGTACTTGGCAGTAGCTGAGATTGTTAAGAAAGTGG 654
||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 433 CTGCTGGGAGATATGAATGGTCAGGGTACTTGGCAGTAGCTGAGATTGTTAAGCAAGTGG 492
Query 655 GACTTAAGCTTCATGCTTCACTTTCTTTCCATGGATCGAAACAAACAGAGATAGGTCTTC 714
||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 493 GACTTAAGCTTCATGCTTCACTTTCTTTCCACGGATCGAAACACCCGGAGATAGGTCTTC 552
Query 715 CTGATTGGGTGGCAAAGATTGGTGATGCTGAACCAGGGATCTATTTTACAGATAGATATG 774
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 553 CTGACTGGGTGGCAAAGATTGGTGATGCTGAACCTGGGATATATTTTACAGACAGATATG 612
Query 775 GACAACAGTACAAAGATTGTTTGTCGTTTGCTGTTGATGATGTTCCTGTTCTTGATGGGA 834
| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||
Sbjct 613 GGCAACAGTACAAAGATTGTTTGACGTTTGCAGTTGATGATGTTCCTGTTCTTGGTGGGA 672
Query 835 AGACTCCTATGGAGGTTTACAGAGGTTTCTGTGAGAGCTTCAAGTCTGCTTTCGCAGATT 894
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 673 AGACTCCTATGGAGGTTTACAGAGGTTTCTGTGATAGCTTCAAGTCTGCTTTTTCAGATT 732
Query 895 ACATGGGCAACACAATCACGGGAATCACATTAGGTTTGGGACCAGACGGTGAGCTGAA-A 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 733 ACATGGGCAACACAATCACGGGAATCACATTAGGTTTGGGACCAGACGGTGAGCT-AAGA 791
Query 954 TATCCTTCTCATCAACATAATGCCAAGCTCTCTGGCGCGGGAGAGTTCCAGTGTTACGAC 1013
||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 792 TATCCTTCTCATCAACACGATGTCAAGCGCTCTGGCGCGGGAGAATTCCAGTGTTACGAC 851
Query 1014 AAACACATGCTTTCTGCTCTTAAAGGCTACGCTGAATCCACTGGAAACCCTCTTTGGGGT 1073
|||||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 852 AAACACATGCTTTCCGCTCTCAAAGCCTACGCTGAATCAACTGGAAACCCTCTTTGGGGT 911
Query 1074 CTCGGTGGTCCTCACGATGCTCCTGCTTACGATCAACAGCCTAATTCCTCTTCATTCTTC 1133
||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 912 CTCCGTGGTCCACACGATGCTCCTGCTTATGATCAACAGCCTAATTCCTCTTCATTCTTC 971
Query 1134 TCAGACGGCGGGTCATGGGAATCTCAGTACGGCGATTTCTTCTTGTCTTGGTATTCGTCT 1193
| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 972 TTAGACGGCGGGTCCTGGGAATCTCAGTACGGAGATTTCTTCTTGTCTTGGTATTCGTCT 1031
Query 1194 CTTCTCACCTCCCACGCAGACCGAGTCCTCTCCGTTGCTTCATCTGCATTTAGCGGGATT 1253
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1032 CTTCTCTCCTCCCACGCAGACCGAGTTCTCTCAGTTGCTTCATCTGCATTTAGCGGGATT 1091
Query 1254 GGAGTGCCTCTATGTGGGAAGCTACCTCTCTTACACCAATGGCACAAGCTAAGATCTCAT 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GGAGTGCCTCTATGTGGGAAGCTACCTCTCTTACACCAATGGCACAAGCTAAGATCTCAG 1151
Query 1314 CCTTCTGAGTTAACAGCTGGATTCTACAGCTCTAATGGTCAGGACAGGTACGAGGCTATC 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CCTTCTGAGTTAACAGCTGGATTCTACAGCTCTAATGGTCAGGACAGGTACGAGGCTATC 1211
Query 1374 GCAGAGATCTTTGCAAAGAACTCTTGTAGAATGATAATACCAGGAATGGACCTATCCGAC 1433
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1212 GCAGAGATCTTTGCAAAGAACTCATGTAGAATGATAATACCGGGAATGGATCTATCCGAC 1271
Query 1434 GAGCACCAATCACCTGAATCTCTCTCGAGCCCCGAGTCATTACTTGGCCACATCAAAACT 1493
||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1272 GAGCATCAGTCACCTGAATCTCTCTCGAGCCCCGAGTCATTACTTACCCACATCAAAACA 1331
Query 1494 TCCTGCAAGAAACAAGGAGTCGTTGTCTCAGGGCAAAACTCATCCACCCCGGTTCCTGGT 1553
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1332 TCCTGCAAGAAACAAGGAGTCGTTGTTTCAGGGCAAAACTCGTCCACCCCGGTGCCTGGT 1391
Query 1554 GGGTTTGAGAGGATCGTTGAGAATCTGAAGGATGAGAATGTAGGAATTGATCTGTTCACT 1613
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1392 GGGTTTGAGAGGATTGTTGAGAATCTGAAGGATGGGAATGTAGGAATTGATCTGTTCACT 1451
Query 1614 TACCAGAGAATGGGAGCACTTTTCTTCTCTCCAGAGCATTTCCATGCTTTCACAGTCTTT 1673
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1452 TACCAGAGAATGGGAGCACTCTTCTTCTCTCCAGAGCATTTCCATGCATTCACAGTCTTT 1511
Query 1674 GTCCGGAACCTGAGCCAATTCGAGTTGTCCTCAGACGATCAAGCCTCAGAGGCTGAGGTT 1733
||||||||||||||||||||||||||||||||||||||| |||| |||| || ||
Sbjct 1512 GTCCGGAACCTGAGCCAATTCGAGTTGTCCTCAGACGATAAAGCAGCAGA---TG---TT 1565
Query 1734 GAGGCCGAGACAGCT-AGCATAGGTTCAGGCACTGGTGCACCTAGTTTGCAAACCGCTTA 1792
|| | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 GAAGACGAGACAG-TGAGCATAGGTTCAGGCACTGGTGCACCTAGTTTGCAAACCGCTTA 1624
Query 1793 ATGAAATGCAAAATCATAATTTTTTATGTAAATAAGAAAAGTCTCCTGTTGTTTTAGCAT 1852
|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1625 ATGAAATGCAAAATCATA-TTTTT-ATGTAAATACGAAAAGTCTCCTGTTGTTTTAGCAT 1682
Query 1853 TTATATAGAATGTCATAT 1870
||||||||| ||||||||
Sbjct 1683 TTATATAGATTGTCATAT 1700
> Ahg317500 jgi|Araly1|317500|fgenesh1_pm.C_scaffold_3000516
Length=1362
Score = 547 bits (296), Expect = 9e-155
Identities = 526/636 (83%), Gaps = 20/636 (3%)
Strand=Plus/Plus
Query 1065 CTTTGGGGTCTCGGTGGTCCTCACGATGCTCCTGCTTACGATCAACAGCCTAATTCCTCT 1124
|||||||| ||| | ||||| |||||||||||| ||| ||||||| ||||||||| ||
Sbjct 709 CTTTGGGGACTCAGCGGTCCGCACGATGCTCCTTATTATGATCAACGGCCTAATTCAGCT 768
Query 1125 TCATTCTTCTCAGACGGCGGGTCATGGGAATCTCAGTACGGCGATTTCTT-CTTGTCTTG 1183
|||||||||| || || || ||||||||||| | || || |||||||| |||| ||||
Sbjct 769 CCATTCTTCTCGGATGGTGGATCATGGGAATCGGAATATGGTGATTTCTTCCTTG-CTTG 827
Query 1184 GTATTCGTCTCTTCTCACCTCCCACGCAGACCGAGTCCTCTC-CGTTGCTTCATCTGCAT 1242
|||||||||||||||| |||||||||||||||||| || || | ||||||| |||| ||
Sbjct 828 GTATTCGTCTCTTCTCGTCTCCCACGCAGACCGAGTTCTTTCTC-TTGCTTCTTCTGTAT 886
Query 1243 TTAGCGGGATTGGAGTGCCTCTATGTGGGAAGCTACCTCTCTTACACCAATGGCACAAGC 1302
||||||| | ||| |||||||||| ||| || |||||||||| || |||||||||||||
Sbjct 887 TTAGCGGCACAGGATTGCCTCTATGCGGGCAGTTACCTCTCTTGCATCAATGGCACAAGC 946
Query 1303 TAAGATCTCA-TCCTTCTGAGTTAACAGCTGGATTCTACAGCTCTAAT-G-GTC-AGGAC 1358
|| | || || ||||| |||| |||||||||||| ||| | | ||| | | | | ||
Sbjct 947 TACGTTC-CAGGCCTTCCGAGTCAACAGCTGGATTTTACTG--C-AATGGAGACAATGAT 1002
Query 1359 AGGTACGAGGCTATCGCAGAGATCTTTGCAAAGAACTCTTGTAGAATGATAATACCAGGA 1418
||||| |||||| | ||||||| |||||||||||||||||||||||||||| | || ||
Sbjct 1003 AGGTATGAGGCTGTTGCAGAGACCTTTGCAAAGAACTCTTGTAGAATGATACTGCCTGGG 1062
Query 1419 ATGGACCTATCCGACGAGCACCAATCACCTGAA-TCTCTCTCGAGCCCCGAGTCATTACT 1477
||||| |||| |||||| | ||||| || ||| ||||||||||||||||||||||| ||
Sbjct 1063 ATGGATTTATCAGACGAGTATCAATCGCC-GAAATCTCTCTCGAGCCCCGAGTCATTGCT 1121
Query 1478 TGGCCACATCAAAACTTCCTGCAAGAAACAAGGAGTCGTTGTCTCAGGGCAAAACTCATC 1537
|| ||||||||| |||| ||||||||||| |||||||| || ||||| |||||||||||
Sbjct 1122 TGCCCACATCAAGACTTGTTGCAAGAAACACGGAGTCGTCGTTTCAGGACAAAACTCATC 1181
Query 1538 C-ACCCCGGTTCCT-GGTGGGTTTGAGAGGATCGTTGAGAATCTGAAGGATGAGAATGTA 1595
| | || ||| || |||||||||| |||| ||||| || ||||| ||||||| |
Sbjct 1182 CGAACCAAA--CCTTGGCGGGTTTGAGAAGATCAAAGAGAACCTAAAGGACGAGAATGCA 1239
Query 1596 G-GAATTGATCTGTTCACTTACCAGAGAATGGGAGCACTTTTCTTCTCTCCAGAGCATTT 1654
| || | ||||||||||| |||||||||||||||||||||||||| || ||||| |||||
Sbjct 1240 GCGA-TAGATCTGTTCACGTACCAGAGAATGGGAGCACTTTTCTTTTCCCCAGATCATTT 1298
Query 1655 CCATGCTTTCACAGTCTTTGTCCGGAACCTGAGCCA 1690
|||||| ||||||| |||||||||||||| |||||
Sbjct 1299 CCATGCCTTCACAGAGTTTGTCCGGAACCTTAGCCA 1334
> Ahg945815 jgi|Araly1|945815|scaffold_702044.1
Length=751
Score = 302 bits (163), Expect = 8e-81
Identities = 191/205 (93%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 435 GAGAGTGTAAAATTATTTGTTGGGCTTCCGTTAGACACAGTTTCAGACTGCAACAATGTG 494
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||
Sbjct 489 GAGAGTGTAAAATTATTCGTTGGGCTTCCACTGGACACAGTTTCAGACTGCAACAACGTG 548
Query 495 AATCACTTGAAAGCTATTACAGCTGGGCTTAAAGCTTTGAAGCTACTTGGTGTAGAAGGT 554
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 549 AACCACTTGAAAGCTATCACAGCTGGGCTTAAAGCTTTGAAGCTACTTGGTGTTGAAGGC 608
Query 555 ATTGAGTTACCTATCTTTTGGGGAGTTGTTGAGAAAGAAGCTGCTGGGAAATATGAATGG 614
||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 609 ATTGAGTTACCAATCTTTTGGGGAGTTGTTGAGAAAGAAGCTGCAGGGAAATATAAATGG 668
Query 615 TCTGGGTACTTGGCAGTAGCTGAGA 639
|| |||||||||||||||||||||
Sbjct 669 TCAAGGTACTTGGCAGTAGCTGAGA 693
> Ahg940479 jgi|Araly1|940479|scaffold_601023.1
Length=391
Score = 158 bits (85), Expect = 2e-37
Identities = 137/160 (86%), Gaps = 12/160 (8%)
Strand=Plus/Plus
Query 333 GAGATCGCGATAC-GTTGCTCTTCGAGATCTGTCAAATGTGAAGCCATCGTCTCCGATGA 391
||||||||||| | | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 23 GAGATCGCGAT-CAGGTGTTCTTCGAGATCTGTCAAATGTGAAGCCATCGTCTCCGATGA 81
Query 392 CGCTTC-TCCGTTTCTCAAATCCACTCCAAAATCTAAATCGCTCGAGAGTGTAAAATTAT 450
|| ||| |||||||||||| ||| | ||||||| ||||||| | | | ||||||||
Sbjct 82 CG-TTCCTCCGTTTCTCAATTCCTCCCCAAAATTTAAATCG-T-G----T--AAAATTAT 132
Query 451 TTGTTGGGCTTCCGTTAGACACAGTTTCAGACTGCAACAA 490
| ||||||||||| | |||||||||| ||||||||||||
Sbjct 133 TCGTTGGGCTTCCACTGGACACAGTTTTAGACTGCAACAA 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5