BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18780.1 Length=1652 Score E Sequences producing significant alignments: (Bits) Value Ahg488765 jgi|Araly1|488765|fgenesh2_kg.6__1899__AT5G18780.1 1980 0.0 > Ahg488765 jgi|Araly1|488765|fgenesh2_kg.6__1899__AT5G18780.1 Length=1329 Score = 1980 bits (1072), Expect = 0.0 Identities = 1241/1324 (94%), Gaps = 6/1324 (0%) Strand=Plus/Plus Query 332 AGGACGAGTTAGG-GGAAGTGGGGAAGACAGGATAAGCATATTACCTGAACCATTGCTAT 390 |||||||||| || |||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 9 AGGACGAGTT-GGTACAAGTGGGGAAGACAGGTTAAGCATATTACCTGAACCATTGTTAT 67 Query 391 GTCATATACTTAGCTTTCTTAGGACTAAAGATTCTGTTAGGACAAGTGTTCTGTCTTCTA 450 |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| Sbjct 68 GTCATATACTTAGCTTTCTTAGGACTAAAGATTCGGTTAGGACAAGTGTTTTGTCCTCTA 127 Query 451 GATGGAGAGATCTCTGGCTATGGGTTCCTAGATTAGACTTGGACAAATCCGACTTCTCTG 510 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | Sbjct 128 GATGGAGAGATCTCTGGCTTTGGGTTCCTATATTAGACTTGGACAAATCCGACTTCTCAG 187 Query 511 ATGACAATCCATCTGCCAGTTTCGTCGATAAGTTTCTGAATTTTCGAGGTGAATCTTACT 570 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 ATGACATTCCCTCTGCCAGTTTCGTCGATAAGTTTCTGAATTTTCGAGGTGAATCTTACT 247 Query 571 TGCGTGGATTCAAGTTAAACACTGACCACGATGTCTATGACATTTCTACACTCGACGCCT 630 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 248 TGCGTGGATTCAAGTTAAACACTGACCACGATGTCTATGACACTTCTACACTCGAGGCCT 307 Query 631 GTCTGATGAGACTTGATAAGTGTAAGATTCAGCATTTTGAAATCGAGAATTGTTTTGGCT 690 |||||||| |||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct 308 GTCTGATGGGACTTGTTAAGTGTAGGATTCAGCATTTTGAAATCGAGAATTATTTTGGCT 367 Query 691 TTTGTATCCTCCTGATGCCTTTGATAATTCCAATGTGTCACACTTTGGTAAGCTTGAAAC 750 ||||||||||| ||||||||||||| || ||||||||||||| ||||||| |||||||| Sbjct 368 TTTGTATCCTCATGATGCCTTTGATCCTTTCAATGTGTCACACATTGGTAACCTTGAAAC 427 Query 751 TCAGTTTCGTAATTCTGAGTAAATTCGGGTCTCTTTCTTTACCCTGTCTCGAGATAATGC 810 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 428 TCAGTTTCGTAATTCTGAGTAAATTCGAGTCTCTTTCCTTACCCTGTCTCGAGATAATGC 487 Query 811 ACTTTGAAAAGGTTATATTTCCCAGTGACAAGTCTGCAGAGGTGCTAAT-TGCATGCTCT 869 |||| ||||||||||||||||| |||||||| ||||||||| ||||| | |||||||| Sbjct 488 ACTTCGAAAAGGTTATATTTCCGGGTGACAAGGCTGCAGAGGCACTAATCT-CATGCTCT 546 Query 870 CCGGTTCTTAGAGATTTGAGAATAAGCCAGAGTGGAGATGATGCTGTTGAAGTTTTACGC 929 ||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| Sbjct 547 CCGGTTCTTAGAGATTTGAAAATAAGCCAGAGTAGAGATGATGCTGTAGAAGTTTTACGC 606 Query 930 GTCTGCTCTGCCTCACTGAAGAGCTTCACTCTGAAACGGACGGATCATGATTATGTTGGA 989 ||||||||||||||||| |||||||||||| |||||| || |||| |||||||||| || Sbjct 607 GTCTGCTCTGCCTCACTAAAGAGCTTCACTTTGAAACTAACTGATCGTGATTATGTT-GA 665 Query 990 -AATGGTGAATATACAGTTGTGATCGATACTCCGAGACTTGAGTATCTGAATCTCAAAGA 1048 ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 666 CAATGGTGGATTTACAGTTGTGATCGATACTCCGAGACTTGAGTATCTGAATCTCAAAGA 725 Query 1049 TTATCAATGCCAAGGCTTCAAGATAGTCAGTATGAGTGAATATGTCAGGGTTCATGTTGA 1108 ||| |||||| ||||||||||||||||||||||||||||| |||||| |||| ||||||| Sbjct 726 TTACCAATGCAAAGGCTTCAAGATAGTCAGTATGAGTGAAGATGTCAAGGTTGATGTTGA 785 Query 1109 TGTCGTATTTGAAGTGATAGGTGGTACTGTATTGTCGAAAAGAAATATCATTTGTGATTT 1168 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 786 TGTCGTATTTGAAGTGATAGGTGGTACGGTATTGTCCAAAAGAAATATCATTTGTGATTT 845 Query 1169 TCTATCCTGTGTCTCAAACGTCAGATATATGACCATCTCAAGGAGGAGTCTTGAGTTCAT 1228 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 846 TCTATCCTGTGTTTCAAATGTCAGATATATGACCATCTCAAGGAGGAGTCTTGAGTTCAT 905 Query 1229 CTATCGTCACCTGGAATTGAAGCCACGATTCAAATTTCATGACTTGGCTCGTTTGCGTGC 1288 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 906 CTATCGTCACCTGGAATTGAAGCCACGATTCAAATTTCATGACTTGGCTCGTCTGCGTTC 965 Query 1289 TACTATGTTCTCAAACTCCTCTCCGGAAATGTTGCCAGTCATTCTTGAGACATGCCCGAA 1348 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 966 TACTATGTTCTCAAACTCCTCTCCGGAAATGTTGCCAGTCATTCTTGAGACATGCCCAAA 1025 Query 1349 TCTGAAACACCTCACCTTGGAATTGGTTCATGATTCTCTAGTGACGGAGGGGACAAGTGG 1408 |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 1026 TCTGAAACACCTCACCTTGGAATTGGTTCATGATTCTCTAGTAACAGAAGGGACAAGTGG 1085 Query 1409 ACTTTTGACTGTGCTGCCTCGTTGTTTGATATCATCCCTTGCATCTGTCGATATCGAAAG 1468 ||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1086 ACTTTTGACTGCCCCGCCTCGTTGTTTGATTTCATCCCTTGAATCTGTCGATATCGAAAG 1145 Query 1469 CCCAATCACGGATAAAGCAACGGAACTGAAACTGGTTAGCTACTTGTTGGAGAACTCGAC 1528 ||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1146 CCCGATAACGGATAAAGCAACGGAACTGAAACTGGTTAGCTACTTTTTGGAGAACTCGAC 1205 Query 1529 AACTCTGAAGAAGCTTGTTCTACGTTTGAATCAGTCTTGTAGAGATAAATATGAGCCAGG 1588 ||| || |||||||||||||| |||||||||||||||||| |||||||| | ||||| || Sbjct 1206 AACACTCAAGAAGCTTGTTCTTCGTTTGAATCAGTCTTGTCGAGATAAACACGAGCCGGG 1265 Query 1589 TCTCTTGAAACAAGTCTTACAATCTCCAAGGTGCTCTAGTTTGTGTCAATTAGTCATTCT 1648 ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 1266 TCTCTTGAAACAACTCTTAGAATCTCCAAGGTGCTCTAGTTTGTGTCAACTAGTCATTAT 1325 Query 1649 CTGA 1652 |||| Sbjct 1326 CTGA 1329 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61934738370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5