BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19010.1 Length=2547 Score E Sequences producing significant alignments: (Bits) Value Ahg488785 jgi|Araly1|488785|fgenesh2_kg.6__1919__AT5G19010.1 3199 0.0 Ahg911627 jgi|Araly1|911627|Al_scaffold_0001_1881 514 1e-144 > Ahg488785 jgi|Araly1|488785|fgenesh2_kg.6__1919__AT5G19010.1 Length=2295 Score = 3199 bits (1732), Expect = 0.0 Identities = 1978/2094 (94%), Gaps = 27/2094 (1%) Strand=Plus/Plus Query 344 AACTACTCTGATTTGTTTCAATCGATTCTGGATTTCGGGATTTGGATATAGAGCTCTCTG 403 |||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||| | Sbjct 227 AACTACCCTGATTTGTTTCATTCGATTCTGGATTTAGGGATTTGGATATTGAGCTCT-GG 285 Query 404 TTTTTGACATTGCCTTTGGAACTAAAATTCTCAGTCTTTGCAtttttttGATTCAAAAGC 463 ||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 286 GTTTTGACATTGCCATTGGAACTAAAATTCTCAGTCTTTGCATTTCTTTGATTC-AAAGC 344 Query 464 TCACTAAGTTTGGGTTTCAGAAGCTATTACATTTGGTCTTCGTAAGCGTCCTTTGAATGC 523 | |||||||| || ||| |||| ||| |||||||||||||||||||| |||| |||| Sbjct 345 TTACTAAGTTCGGTTTTTGGAAGAGATTCCATTTGGTCTTCGTAAGCGTGTTTTGGATGC 404 Query 524 CCTGTAGCTGAAGATGCAGCCTGATCACCGCAAAAAGTCATCAGTTGAGGTAGATTTCTT 583 ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 405 TCTGTAGCCGAAGATGCAACCTGATCAGCGCAAAAAGTCATCAGTTGAGGTAGATTTCTT 464 Query 584 CACGGAATATGGTGAAGGAAGCAGATACAGAATAGAGGAAGTGATTGGTAAAGGAAGTTA 643 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 465 CACGGAATACGGTGAAGGAAGCAGATACAGAATAGAGGAAGTTATTGGTAAAGGAAGCTA 524 Query 644 TGGAGTTGTCTGTTCTGCTTACGATACACATACCGGAGAGAAAGTTGCGATTAAGAAAAT 703 ||||||||| || || ||||||||||||||||||||||||||||||||||||||||| || Sbjct 525 TGGAGTTGTTTGCTCGGCTTACGATACACATACCGGAGAGAAAGTTGCGATTAAGAAGAT 584 Query 704 CAATGATATCTTT-GAGCATGTTTCGGATGCAACTCGCATTCTTCGTGAGATCAAACTTC 762 ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 585 CAATGATAT-TTTCGAGCATGTTTCGGATGCAACTCGCATTCTCCGTGAGATCAAACTTC 643 Query 763 TTAGACTCTTACGCCATCCTGACATTGTTGAGATCAAACACATCTTGTTGCCGCCTTCAA 822 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 644 TCAGACTCTTACGCCATCCAGACATTGTTGAGATCAAACACATCTTGTTGCCGCCTTCAA 703 Query 823 GAAGAGAGTTTCGAGACATTTACGTGGTTTTCGAGCTTATGGAATCTGATTTGCATCAGG 882 ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 704 GAAGAGAGTTTAAAGACATTTATGTGGTTTTCGAGCTCATGGAATCTGATTTGCATCAGG 763 Query 883 TTATTAAGGCAAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCCTCTATCAGCTTC 942 ||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| Sbjct 764 TTATTAAGGCAAATGATGATTTGACTCGTGAGCATTACCAGTTTTTTCTCTATCAGCTTC 823 Query 943 TTCGTGGCCTCAAGTATATACACACAGCTAATGTCTTTCATCGGGATCTTAAACCCAAAA 1002 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 824 TTCGTGGCCTCAAGTATATACACACAGCTAATGTCTTTCATCGGGATCTAAAACCAAAAA 883 Query 1003 ACATATTGGCAAATGCTGATTGCAAACTCAAGATCTGTGATTTTGGACTTGCAAGAGTCG 1062 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 884 ACATACTGGCAAATGCTGATTGCAAACTCAAGATCTGTGATTTTGGACTTGCAAGAGTCG 943 Query 1063 CATTCAATGATACACCGACTGCGATATTCTGGACTGATTATGTAGCTACTCGATGGTACA 1122 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 944 CATTCAATGATACACCAACCGCGATATTCTGGACTGATTATGTAGCTACTCGATGGTACA 1003 Query 1123 GGGCTCCAGAACTATGTGGATCTTTTTTCTCAAAGTATACACCGGCAATAGATATATGGA 1182 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1004 GGGCTCCAGAACTGTGTGGATCATTTTTCTCAAAGTATACACCGGCAATAGATATATGGA 1063 Query 1183 GCATCGGGTGCATTTTTGCAGAACTCTTAACAGGGAAACCTCTTTTCCCCGGGAAAAATG 1242 |||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1064 GCATCGGGTGCATTTTCGCAGAGCTCTTAACAGGGAAACCTCTTTTCCCGGGGAAAAATG 1123 Query 1243 TGGTCCATCAATTGGATCTGATGACGGATATGCTGGGAACTCCATCTGCTGAAGCCATTG 1302 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1124 TGGTCCATCAATTGGATCTGATGACGGATATGTTGGGAACTCCATCTGCTGAAGCCATTG 1183 Query 1303 GAAGGGTTAGGAACGAGAAAGCTCGAAGATACTTGAGCAGCATGAGGAAGAAGAAGCCTA 1362 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1184 GAAGGGTGAGGAACGAGAAAGCTCGAAGATACTTAAGCAGCATGAGGAAGAAGAAGCCTA 1243 Query 1363 TTCCTTTTTCACATAAGTTCCCACATACTGATCCTCTTGCTCTTCGTCTTCTAGAAAAGA 1422 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1244 TTCCTTTTTCACATAAGTTCCCACATGCTGATCCTCTTGCTCTTCGTCTTCTAGAAAAGA 1303 Query 1423 TGTTGTCTTTTGAACCCAAGGACCGGCCTACAGCTGAAGAGGCGCTTGCAGATGTGTACT 1482 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1304 TGTTGTCTTTTGAACCCAAGGACCGGCCTACAGCTGAAGAGGCGCTTGCAGATGTATACT 1363 Query 1483 TCAAGGGTTTAGCTAAGGTTGAAAGAGAGCCTTCTGCTCAACCTGTCACAAAGTTGGAAT 1542 ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 1364 TCATGGGTTTAGCTAAGGTTGAAAGAGAGCCCTCTGCTCAACCTGTCACCAAGTTAGAAT 1423 Query 1543 TTGAGTTTGAAAGGCGGAGGATCACAAAAGAAGACGTCCGAGAGCTCATATACAGAGAGT 1602 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1424 TTGAGTTTGAAAGGCGGAGGATCACAAAAGAAGACGTGCGAGAGCTCATATACAGAGAGT 1483 Query 1603 CTCTGGAGTACCACCCAAAGATGCTGAAAGAATACTTGGATGGATCAGAGCCAACTAACT 1662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1484 CTCTGGAGTACCACCCAAAGATGCTGAAAGAATACTTGGATGGATCAGAGCCAACTAACT 1543 Query 1663 TTATGTACCCGAGTGCGGTGGAACATTTCAAGAAACAATTTGCTTACCTCGAGGAACACT 1722 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1544 TTATGTACCCGAGTGCGGTGGAACATTTCAAGAAACAGTTTGCTTACCTCGAGGAACACT 1603 Query 1723 ACAAGAATGGTACTTCTCATAATCCCCCTGAGAGGCAACAGCATGCATCATTACCAAGGG 1782 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1604 ACAAGAATGGTACTTCTCATAATCCCCCTGAGAGGCAACAGCACGCATCATTACCAAGGG 1663 Query 1783 CTTGCGTATTGTACTCTGATAACAATCATCCGGTGGCACAACAGAGTTCAGCTGAAGTCA 1842 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | | Sbjct 1664 CTTGTGTATTGTACTCTGATAACAATCATCCAGTGGCACAACAGAGTTCAGCTGAAATTA 1723 Query 1843 CTGATGGACTCTCCAAGTGTAGCATTAGAGACGAGAGACCTCGGGGTGCAGACAGGAATG 1902 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1724 CTGATGGACTCTCTAAGTGTAGCATCAGAGACGAGAGACCTCGGGGTGCAGACAGGAATG 1783 Query 1903 CCCAGATGCCAATGTCGAGAATTCCTATCAACGTCCCTCAAACAATCCAAGGTGCTGCAG 1962 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1784 CCCAGATGCCAATGTCGAGAATTCCTATTAACGTCCCTCAAACGATCCAAGGTGCTGCAG 1843 Query 1963 TAGCTAGGCCTGGTAAAGTAGTTGGATCAGTGTTACGCTATAACAACTGCGGCGCAGCCA 2022 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1844 TAGCTAGGCCTGGAAAAGTAGTTGGATCAGTGTTACGCTATAAC---TGCGGCGCAGCCA 1900 Query 2023 CAGGCGTTGAAGCTCTTGAACAACAACAGAGAAGGATGGTCAGAAATCCAGCTGCTGCGT 2082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1901 CAGGCGTTGAAGCTCTTGAACAACAACAGAGAAGGATGGTCAGAAATCCAGCTGCTGCGT 1960 Query 2083 CTCAATACCCAAAGAGGACTCAACCTTGCAAAAGCAACAGAGGAGATGAAGATTGCGCCA 2142 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1961 CTCAATACCCAAAGAGGACTCATCCTTGCAAAAGCAACAGAGGAGATGAAGATTGCGCCA 2020 Query 2143 CCGCTGCTGAAGGTCCAAGTAGATTGAAGCCAAACACTCAGTATATACCACAAAAAGTGT 2202 |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2021 CCGCCGCCGAAGGTCCAAGCAGATTGAAGCCAAACACTCAGTATATACCACAAAAAGTGG 2080 Query 2203 CTGCAGCACAAGATACTGCAATGAGTCGCTGGTATTAAACATGATGTTATGGTTCTAGTT 2262 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2081 CTGCAGCACAAGATACTGCAATGAGTCGCTGGTATTAAACATGATGTTTTGGTTCTAGTT 2140 Query 2263 TTAGCTTTACCACCTCACGTCTCAGGGAGAGCTAAAAAGAGTATCCCTTTGAGTCATCCA 2322 ||||||| ||||| |||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct 2141 TTAGCTTAACCACTTCACGTCTCAGGGAGAGCTAAA--GAGTAGCCCTTTGAATCATCCA 2198 Query 2323 TTGTGTTATCAAGAGCCGAAACGTGAAGACATGCTTAAGAGCGAAATGAGA-GAAGGAAG 2381 | |||||||||||||||||||| |||||| | | | |||| | | || | |||| | | Sbjct 2199 TCGTGTTATCAAGAGCCGAAACATGAAGAGA-G-T-AAGA-C-A--TG-GCTGAAG-A-G 2248 Query 2382 CGTGAGAAGATAAAAGAAGTTCTTACAGATCCTGTCATGTAATTTGTCTTCATA 2435 || | || | | ||| ||||||| |||| |||||||||||||||||||||| Sbjct 2249 CG--A-AA--TGAGAGA--TTCTTACTGATCATGTCATGTAATTTGTCTTCATA 2295 > Ahg911627 jgi|Araly1|911627|Al_scaffold_0001_1881 Length=1740 Score = 514 bits (278), Expect = 1e-144 Identities = 736/948 (78%), Gaps = 68/948 (7%) Strand=Plus/Plus Query 579 TTCTTCACGGAATATGGTGAAG-GAAGCAGATA-CAGAATAGAGGAAG-TGATTGGTAAA 635 |||||||| || ||||| |||| || ||| || ||| || | || | || |||| ||| Sbjct 250 TTCTTCACCGAGTATGGAGAAGCTAA-CAGGTATCAG-ATTCAAGAGGTTG-TTGGGAAA 306 Query 636 GGAAGTTATGGAGTTGTCTG-TTCTGCT-TACGATACACATACCGGAGAGAA-AGTTGCG 692 ||||||||||| ||||| | ||||||| || |||||||| || ||||| || |||||| Sbjct 307 GGAAGTTATGGTGTTGT-GGCTTCTGCTGTA-GATACACACACTGGAGA-AAGAGTTGCT 363 Query 693 ATTAAGAAAATCAATGATATCTTTGAGCATGTTTCGGATGCAACTCGCATTCTTC-GTGA 751 || ||||| ||||| ||| | ||||||||||| || ||||| ||| | |||| || | || Sbjct 364 ATCAAGAAGATCAACGATGTGTTTGAGCATGTCTCTGATGCTACTAGGATTC-TCAGAGA 422 Query 752 GATCAAACTT-CTTAGACT-CTTACGCCATCCTGACATTGTTGAGATCAAACACATCTTG 809 ||||||| || ||| | | ||| || |||||||| |||| ||||| ||||||||| || Sbjct 423 GATCAAA-TTGCTTCGGTTGCTT-CGTCATCCTGATGTTGTGGAGATTAAACACATCATG 480 Query 810 -TTGCCGCCTTCAAGAAGAGAGTTTCGAGACATTTACGTGGT-TTTCGAGCTT-ATGGAA 866 || || ||||| | ||||| || || || ||||| || || ||| ||| || |||||| Sbjct 481 CTT-CCTCCTTCTCGCAGAGAATTCCGGGATATTTATGTTGTCTTT-GAG-TTGATGGAA 537 Query 867 TCTGAT-TTGCATCAGGTTATTAAGGCAAATGATGATTTGACTCCTGAGCATTATCAGTT 925 |||||| || ||||| || || ||||| || |||||||| |||||||||||||||||||| Sbjct 538 TCTGATCTT-CATCAAGTCATCAAGGCCAACGATGATTTAACTCCTGAGCATTATCAGTT 596 Query 926 TTTCCTCTATCAGCTTCTTCGTGGCCTCAAGTATATACACACAGCTAATGTCTTTCATCG 985 |||| | || |||||||||||||| ||||| ||| | ||| |||||||||| |||||||| Sbjct 597 TTTCTTGTACCAGCTTCTTCGTGGTCTCAAATATGTTCACGCAGCTAATGTGTTTCATCG 656 Query 986 GGATCTT-AAACCCAAA-AACATAT-TGGCAAATGCTGATTGCAAACTCAAGATCTGTGA 1042 ||| || ||| ||||| ||||| | | || ||||||||||||||| | ||||||||||| Sbjct 657 AGAT-TTGAAA-CCAAAGAACAT-TCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGA 713 Query 1043 TTTTGGACTTGCAAGAGTCGCATTCAATGATACACCGACTGCGATATTCTGGACTGATTA 1102 |||||| || || | || | || |||||| | || || || ||||| ||||||||||| Sbjct 714 TTTTGGGCTGGCTCGCGTTTCTTTTAATGATGCCCCAACCGCTATATTTTGGACTGATTA 773 Query 1103 TGTAGCTACTCGATGGTA-CAGGGCTCCAGAACTATGTGGATCTTTTTTCTC-AAAGTAT 1160 |||||||||||||||||| | | || || ||||| |||||||| |||||||| ||| ||| Sbjct 774 TGTAGCTACTCGATGGTATC-GTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAA-TAT 831 Query 1161 ACACCGGCAATAGATATATGGAGCATCGGGTGCATTTTTGCAGAACT-CTTAACAGGGAA 1219 || || || || ||||| ||||| |||| ||||| ||||| ||| | ||| ||| | Sbjct 832 ACCCCTGCCATTGATATCTGGAGTGTCGGTTGCATATTTGCGGAAATGCTTTT--GGGTA 889 Query 1220 A-CCTCT-TTTCCCCGGGAAAAATGTGGTCCATCAATTGGATCTGATGACGGA-TATGCT 1276 | ||| | |||||| |||||||| || || || ||||||||||| ||||| || | | || Sbjct 890 AGCCTTTGTTTCCC-GGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTT-CT 947 Query 1277 GGGAACTCCATCTGCTGAAGCC-AT-TGGAAGGGTTAGGAACGAGAAAG-CTCGAAGATA 1333 || |||||| || |||| | | || | |||| |||| || || |||| | | ||||| Sbjct 948 TGGTACTCCACCTCCTGA-GTCGATATC-AAGGATTAGAAATGA-AAAGGCAAGGAGATA 1004 Query 1334 -CTTGAGCAGCATGAGGAAGAAG-AAGCCTATTCCTTTT-TCACATAAGTTCCC-ACATA 1389 ||| |||||||||||||| || || || | ||| ||| || ||||| ||||| | | Sbjct 1005 TCTT-AGCAGCATGAGGAAAAAACAA-CC-AGTCCCTTTCTCTCATAAATTCCCTAAAG- 1060 Query 1390 CTGATCCTCTTG-CTCTTCGTCTTCTAGAAAAGA-TG-TTGTCTTTTGAACCCAAGGACC 1446 |||||||| ||| |||| || ||||| ||| | || ||| |||| || || || |||| Sbjct 1061 CTGATCCT-TTGGCTCTCCGCCTTCTGGAAC-GCCTGCTTGCCTTT-GATCCGAAAGACC 1117 Query 1447 G-GCCTACAGCTGAAGAGGCGCTTGCAGATGTGTACTTCAAG-GGTTT 1492 | || | |||||||||| || || || ||| ||||||| | ||||| Sbjct 1118 GTGCAT-CAGCTGAAGATGCACTAGCTGATCCATACTTCA-GTGGTTT 1163 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96025507645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5