BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19070.1 Length=1357 Score E Sequences producing significant alignments: (Bits) Value Ahg488790 jgi|Araly1|488790|fgenesh2_kg.6__1924__AT5G19070.1 1688 0.0 > Ahg488790 jgi|Araly1|488790|fgenesh2_kg.6__1924__AT5G19070.1 Length=1305 Score = 1688 bits (914), Expect = 0.0 Identities = 1038/1094 (95%), Gaps = 24/1094 (2%) Strand=Plus/Plus Query 266 CCGGCAACGCCGTTGAAATAGTCACCGGAGACCATTTTGCATCGTAGAGTTCGCCTTTTA 325 |||||||||||||||||||||||||||||| | |||| ||||||||||| ||||| || | Sbjct 234 CCGGCAACGCCGTTGAAATAGTCACCGGAGGCGATTTAGCATCGTAGAG-TCGCCGTTCA 292 Query 326 TGGCGTTCACGTGGGGATCTGCTCTCCGGATTTCTGTTCTCCTTATCCTTGTAGCTGCAA 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 TGGCGTTCACGTGGGGATCTGCTCTCCGGATTTCTGTTCTCCTTATCCTTGTAGCTGCAA 352 Query 386 TTGTCTTAGCTTGTTATTTTCTCCCTGTTGAGAAGCTATTGAAGGATTTTTTGTTATGGG 445 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 353 TTGTCTTAGCTTGTTATTTTCTCCCCGTTGAGAAGCTATTGAAGGATTTTTTGTTATGGG 412 Query 446 TTGAACAAGATCTAGGGCCTTGGGGACCTTTTGCCCTAGCTGTTGCGTACATTCCTCTAA 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 TTGAACAAGATCTAGGGCCTTGGGGACCTTTTGCCCTAGCTGTTGCGTACATTCCTCTAA 472 Query 506 CAGTTTTGGCTGTTCCTGCCTCGGTTCTCACGCTCGGTGGTGGCTACCTTTTTGGGCTGC 565 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 473 CAGTTTTGGCTGTTCCTGCCTCGGTTCTCACGATCGGTGGTGGCTACCTTTTTGGGCTGC 532 Query 566 CAATTGGTTTTGTGGCGGACTCAGTCGGTGCTACACTTGGCTCAGGAGCTGCATTTCTAC 625 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 533 CAATTGGTTTTGTGGCGGACTCAGTCGGTGCTACACTTGGCTCAGGAGCCGCATTTCTTC 592 Query 626 TAGGCCGTACGATTGGAAAACCTTTTGTAGTTGCAAAATTAAAGGATTATCCTCAGTTTC 685 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 TAGGCCGTACAATTGGAAAACCTTTTGTAGTTGCAAAATTAAAGGATTATCCTCAGTTTC 652 Query 686 AATCAGTGGCACTCGCGATAGAGAAATCCGGCTTCAAGATATGCTTGTTGCTCCGGCTTG 745 | ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 653 AGTCAGTGGCACTCGCGATTGAGAAATCCGGCTTCAAGATATGCTTGCTGCTCCGGCTTG 712 Query 746 CTCCTCTTCTTCCGTTCAGCATGTTGAACTACCTCTTATCTGTCACGCCAATTCGGCTAG 805 |||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 713 CTCCTCTTCTCCCCTTCAGCATGTTGAACTACCTCTTATCTGTAACACCAATTCGGCTAG 772 Query 806 GTCCATACTTGCTTTCTTCGTGGTTAGGGATGATGCCAATAACACTTGCGTTAGTGTATG 865 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 773 GTCCATACTTGCTTTCTTCTTGGTTAGGGATGATGCCAATAACACTTGCGTTAGTGTATG 832 Query 866 TTGGAACAACTCTAAAAGACCTTTCTGATGTAACTCACAAGTGGAGCGAGTTCTCGCCAG 925 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 833 TTGGAACAACTCTAAAAGACCTTTCTGATGTAACTCACAAGTGGAGCGAATTCTCGCTAG 892 Query 926 GTCGCTGGGCGTTCTTGATTTCGAGCCTTGTAATATCCGTGATATTAATGGTGTGTGTTA 985 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 GCCGCTGGGCGTTCTTGATTTCGAGCCTTGTAATATCCGTGATATTAATGGTGTGTGTTA 952 Query 986 CAAAGGTGGCGAAGGACGCTCTAAGAAAAGCTTTAGCAGAGCACGGAGGAGACATGAACG 1045 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953 CGAAGGTGGCGAAGGACGCTCTAAGAAAAGCTTTAGCAGAGCACGGAGGAGACATGAACG 1012 Query 1046 AAGCGGTTGCAGCCTTGCCGGAGCTGACCGTTACTGATGATGCTTCGACGGATTTAAATG 1105 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1013 AAGCGGTTGCAGCCTTGCCAGAGCTGACCGTTACTGATGATGCTTCGACGGATTTAAATG 1072 Query 1106 AGCCTCTCTTGATAAAGATAGATGCACAACAACCTCAAGACCAAGTAAACCATAGTCATT 1165 |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1073 AGCCTCTCTTAATAAAGATAGATGCTCAACAACCTCAGGACCAAGTAAACCATAGTCATT 1132 Query 1166 AAAATTAAGATGATGAATACTTACTTTGTATAATCTTTAT-TTTAACATACAAAGCTTAG 1224 |||| | ||| | ||||||||||||| |||||| |||||||| ||| Sbjct 1133 AAAA--A------------CTT--T--GTATAATCTTTATCTTTAACTTACAAAGCATAG 1174 Query 1225 TTTTCTTGGTTTGTATAATAATAACATAGATTAAAAATTATTTTTAAAAAGTTATTTTT- 1283 |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1175 TTTTATTGGTTTGTATAATAA---CATAGATTAAAAATTATTTTTAAAAAGTTGTTTTTT 1231 Query 1284 CTTAGTAACTTTGAGATGTAATTATTAGTTCACAGAGATTTAAAATATTGGATGAATAAA 1343 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1232 CTTAATAACTTTGAGATGTAATTATTAGTTCACAGGGATTTAAAATATTGGATGAATAAA 1291 Query 1344 AAGAAACTAAATGG 1357 |||||||||||||| Sbjct 1292 AAGAAACTAAATGG 1305 Score = 372 bits (201), Expect = 4e-102 Identities = 225/236 (95%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 1 TACGCGCCACGCGGTTTAATGAAACCAGTCACAGTTCTAATGCTTACGCTAAACATGGAG 60 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 1 TACGCGCCACGCGGTTTAATGTAACCAGTCACAGTTCTTATGCTTACGCTAAACATGGAG 60 Query 61 TCTCCAAACCAAATCAACGACAATTGAATCCACACCTTCACGAAACCCCCCAAAGTTTTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTCCAAACCAAATCAACGACAATTGAATCCACACCTTCACGAAACCCCCCAAAGTTT-- 118 Query 121 GTCTTTTTCGGTTTCGGATTACATCATCTCCAAGACAAGCACCAGCATCAGATTTTCTGC 180 |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || Sbjct 119 GTCTTTTTCGGTTTCGGATTACATCATCTCCAAGGCAAGCACCAGCACCAGATTTTCCGC 178 Query 181 ATCCTTAAAGATCTCGTTGCGGTTTTTGTCGGAATTGTTTCGATTTGTTGTGGTTC 236 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 179 ATCCTTAAAGATCTCGTTGCGGTTTTTGTCGGAAAA-TTTCGGTTTGTTGTGGTTC 233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50779725444 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5