BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19090.1 Length=2163 Score E Sequences producing significant alignments: (Bits) Value Ahg488793 jgi|Araly1|488793|fgenesh2_kg.6__1927__AT5G19090.2 955 0.0 Ahg477915 jgi|Araly1|477915|fgenesh2_kg.3__616__AT3G06130.1 82.4 1e-14 > Ahg488793 jgi|Araly1|488793|fgenesh2_kg.6__1927__AT5G19090.2 Length=1689 Score = 955 bits (517), Expect = 0.0 Identities = 654/713 (92%), Gaps = 37/713 (5%) Strand=Plus/Plus Query 1461 GGCGGTGGTGGTGGAGGGGGAGGACCTCAGAGCATGAGTATGCCAATGGGCGGTGCAATG 1520 ||||||||||||||||||| |||||||| | ||||||| | || || ||||| Sbjct 1004 GGCGGTGGTGGTGGAGGGGAAGGACCTCCGGGCATGAG--T----AT--GC----CAATG 1051 Query 1521 GGTGGTCCAATGGGAAGTCTACCACAAATGGGTGGTGGTCCCGGTCCAATGAGTAATAAT 1580 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1052 GGTGGTCCAATGGGTAGTCTACCACAAATGGGTGGTGGTCCCGGTCCAATGAGTAATAAT 1111 Query 1581 ATGCAGGCGGTTCAAGGATTACCCGCAATGGGTCCAGGAGGTGGTGGTGGCGGTGGCCCA 1640 |||||||| ||||| |||||||||||||||||| | ||| |||||||||||||||||| Sbjct 1112 ATGCAGGCAGTTCAGGGATTACCCGCAATGGGT--A-CAGGCGGTGGTGGCGGTGGCCCA 1168 Query 1641 TCCGCAGAAGCACCACCAGGATATTTCCAAGGCCAAGTCTCCGGAAACGGCGGAGGCGGA 1700 ||||||| ||||||||||||||||||||||||||||||| |||| || || ||||||||| Sbjct 1169 TCCGCAGGAGCACCACCAGGATATTTCCAAGGCCAAGTCCCCGGCAATGGGGGAGGCGGA 1228 Query 1701 CAAGACTCAATGCCGGGAAACCCCTACTTacaacagcagcaacag------caacaacaa 1754 |||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| Sbjct 1229 CAAGACTCAATGCCGGCAAATCCCTACTTACAACAGCAGCAACAGCAACAACAACAACAA 1288 Query 1755 caacaaTACTTAGCGGCGGTTATGAACCAGCAACGATCCATGGGAAACGAACGGTTCCAG 1814 |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| Sbjct 1289 CAACAATACTTAGCGGCGGTTATGAACCAGCAACGAGCCATGGGCACCGAACGGTTCCAG 1348 Query 1815 CCGATGATGTACGCTAGACCACCGCCAGCTGTCAACTATATGCCACCACAACCGCAACCG 1874 ||||||||||||||||||||||| ||||||||||||||||||||| | | | |||||| Sbjct 1349 CCGATGATGTACGCTAGACCACCACCAGCTGTCAACTATATGCCA-C-C-A---CAACCG 1402 Query 1875 CACCAACAACATCCATACCCGTATCCATATCCGTATCCACCCCAGTATCCGCCTCACAAT 1934 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1403 CACCAACAACATCCATACCCGTATCCATATCCGTATCCACACCAGTATCCGCCTCACAAT 1462 Query 1935 GGTGACCAGTATTCTGATTACTTCAATGACGAGAACACATCAAGCTGCAATATTATGTGA 1994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1463 GGTGACCAGTATTCTGATTACTTCAATGACGAGAACACATCAAGCTGCAATATTATGTGA 1522 Query 1995 ACAACAACAACAAAACTTTCCATAGTTTGTGTCCGGTCTGTGATTATACATGGAAATG-t 2053 |||| || | |||||||||||||||||||| ||| ||||||||||||||||||||||| | Sbjct 1523 ACAA-AA-A-CAAAACTTTCCATAGTTTGT-TCCTGTCTGTGATTATACATGGAAATGGT 1578 Query 2054 tttttttttCATAATTATTGGGGGTTCTTAGAATCCtt-ttttttC-C-TCCAACGGATC 2110 |||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| Sbjct 1579 TTTTTTTTTCATAATTATTGGGGGTTCTTAGAATCCTTCTTTTTTCTCCTCCAACGGATC 1638 Query 2111 AAATCCTAAATTATATTAGGAtttttttttATAATTTGTGATAGTTCTTAAGT 2163 ||||||||||||||||||||||||| ||||| | ||||||||||||||||||| Sbjct 1639 AAATCCTAAATTATATTAGGATTTTCTTTTA-A-TTTGTGATAGTTCTTAAGT 1689 Score = 795 bits (430), Expect = 0.0 Identities = 492/519 (95%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 1 AGTAGCAACTTTGCATCATCATCGTCA--------tctctctctctctctctccctctcA 52 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 1 AGTAGCAACTTTGCATCATCATCATCATCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCA 60 Query 53 TTCTGAAATAGATGAAGTAGAGAAGTTAATGTTCACCAAACTTACTGTAAAGCCTGAAAC 112 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 TTCTGAAATAGATGAAGTAGAGAAGTTAATGTTCACCAAACTTACTGTAAAGTCTGAAAC 120 Query 113 TTTCTTCCTTCTTCTTCTTTGCTTCATTCAAATTAATCTTTCAAGAACCAGCGGAGTTGT 172 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 121 TTTCTTCCTTCTTCTTCTTTGCTTCATTCAAATTAATCTTTCAAGAACCAGAGGAGTTGT 180 Query 173 CTCAGATCTAGTGATAAAAGTGAG-ATAGATTTGAATTTCGTCACCAATTCAAGAAAAGA 231 |||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||| Sbjct 181 CTCAGATCTAGTGATATAAGTGAGGA-AGATTTGAATTTTGTCACCAATTCAAGAAAAGA 239 Query 232 TGAGTAAAGAAGAGTTTATGAAGATCCAGACTTGTGTTCTCAAAGTGAATATTCATTGTG 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGAGTAAAGAAGAGTTTATGAAGATCCAGACTTGTGTTCTCAAAGTGAATATTCATTGTG 299 Query 292 ATGGTTGTAAGCAGAAAGTGAAGAAAATCTTGCAGAAAATTGAAGGTGTTTTCACGACAA 351 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 ATGGTTGTAAACAGAAAGTGAAGAAAATCTTGCAGAAAATTGAAGGTGTTTTCACGACAA 359 Query 352 AGATAGACGCAGAGCTAGGGAAAGTGACTGTATCTGGAAACGTCGACCCATCAGTTCTTA 411 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 360 AGATAGACGCAGAGCAAGGGAAAGTGACTGTATCTGGAAACGTAGACCCATCAGTTCTTA 419 Query 412 TCAAGAAGCTCTTGAAATCT-GGTAAACATGCCGAAATCTGGG-GAGCTCCCAAGGGAGG 469 ||||||||||||||||| || ||||||||||||||||| |||| |||||| |||||||| Sbjct 420 TCAAGAAGCTCTTGAAA-CTTGGTAAACATGCCGAAATTTGGGAGAGCTCA-AAGGGAGG 477 Query 470 ATCTAACAACAATCAGAACCAACCCAACTTGGCCAATCA 508 | ||||||||||||||||||||| |||||||||||||| Sbjct 478 AAATAACAACAATCAGAACCAACC-AACTTGGCCAATCA 515 Score = 606 bits (328), Expect = 2e-172 Identities = 386/414 (93%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 612 ggaggaggaggcggcggcggaggtggtggtggcggaCCACCGAAGATGGTTATTCCACAG 671 ||||| || || || || || || ||||| || |||||||||||||||||| |||| ||| Sbjct 521 GGAGGCGGTGGTGGTGGTGGTGGAGGTGGCGGTGGACCACCGAAGATGGTTCTTCCGCAG 580 Query 672 TTAACACCACAACAGATGCAGCAGTTGAATCCTCAACAGCTTCAGCAGCTACAACAACTT 731 ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 581 TTAACTCCACAACAGATGCAGCAATTGAATCCTCAGCAGCTTCAGCAGCTACAACAACTT 640 Query 732 CAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAAGGGTGGTCCAGGT 791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 641 CAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAAGGGTGGTCCAGGT 700 Query 792 CCGGGACCTGGCTCTGTTCCTATGAACAAGAATCCTCAGATGCCTAATAATCCTAATCAG 851 || |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| Sbjct 701 CCTGGACCTGGCTCTGTTCCTATGAACAAGAATCCACAGCTACCTAATAATCCTAATCAG 760 Query 852 AAGGCTGTGAAGTTCAATGTTCC---tgatgatgatgatgaggaagattttagtgatgaa 908 ||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||| Sbjct 761 AAGGCTGTGAAGTTCAATGTTCCGGATGATGATGATGACGAGGACGATTTCAGTGATGAA 820 Query 909 ttcgatgatgagtttgatgaagatgacgacgagtttgatgatgatttggaagatgatgag 968 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 821 TTCGATGATGAGTTTGATGATGATGATGACGAGTTTGATGATGATTTGGAAGATGATGAG 880 Query 969 tttgacgacCACCCACCTCCGCCTAACAAAATGAAGCCTATGATGGGTGGTGGT 1022 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 881 TTTGACGACCACCCACCTCCGCCTAACAAGATGAAGCCTATGATGGGCGGTGGT 934 > Ahg477915 jgi|Araly1|477915|fgenesh2_kg.3__616__AT3G06130.1 Length=1738 Score = 82.4 bits (44), Expect = 1e-14 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 729 CTTCAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAA 778 |||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 714 CTTCAGAAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGGTAAA 763 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81398853565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5