BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19140.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488799 jgi|Araly1|488799|fgenesh2_kg.6__1933__AT5G19140.1 1483 0.0
> Ahg488799 jgi|Araly1|488799|fgenesh2_kg.6__1933__AT5G19140.1
Length=976
Score = 1483 bits (803), Expect = 0.0
Identities = 925/983 (94%), Gaps = 12/983 (1%)
Strand=Plus/Plus
Query 87 GAAATTAAGGAAGTGATTGTTATCACCGGAGGAGAGAGAGAAAATGTTGGGAATTTTCAG 146
|||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GAAATTGAGGAAGTGATCGTAATCGCCGGAGGAGAGAGAGAAAATGTTGGGAATTTTCAG 60
Query 147 TGGAGCTATAGTATCGCCGCCGGAAGAGTTAGTGGCTGCCGGAAGCAGAACTCCGTCGCC 206
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 61 TGGAGCTATAGTATCGCCGCCGGAAGAGCTGGTGGCTGCCGGAAGCCGAACTCCGTCGCC 120
Query 207 GAAAACAACCGGATCAACTTTAGTAAACCGGTTCGTCGAGAAAAATCCATCCGCTGTTTC 266
||||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 121 GAAAACAACCGGAGCAACTCTAGTGAACCGTTTCGTCGAGAAAAATCCATCCGCTGTTTC 180
Query 267 TGTACAAGTCGGCGACTATGTTCAGCTTGCTTACAGCCATCACAACGAGAGTCCTCTCCG 326
||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 181 TGTTCAAGTCGGCGACTATGTTCAGCTTGCTTTCAGCCATCACAACGAGAATCCTCTCCG 240
Query 327 GCCTAGATCATTTGGAGCTAAGGATGAAATATTCTGCTTGTTCCAAGGCTCACTTGACAA 386
||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 241 GCCGAGATCATTTGGGGCTAAGGATGAGATATTCTGCTTGTTCCAAGGTTCACTTGACAA 300
Query 387 CCTAGGAAGCTTGAAACAGCAGTACGGGCTTGCAAAAAACGCAAACGAGGTTCTCTTGGT 446
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 301 CCTAGGAAGCTTGAAACAGCAATACGGGCTTGCAAAGAACGCAAACGAGGTTCTTTTGGT 360
Query 447 CATCGAGGCTTATAAGACTCTCCGTGACAGAGCTCCTTACCCGGCTAACCACGTTGTTGC 506
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 361 CATCGAGGCTTATAAGACTCTCCGTGACAGAGCTCCTTACCCGGCCAACCACGTTGTGGC 420
Query 507 TCACCTAAGTGGCGATTTCGCCTTTGTGGTCTTTGATAAATCAACCTCCACTCTGTTTGT 566
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 TCACCTAAGCGGTGATTTCGCCTTTGTGGTCTTCGATAAATCAACCTCCACTCTGTTTGT 480
Query 567 AGCCTCTGACCAAGTTGGCAAGGTTCCATTGTATTGGGGAATAACAGCTGATGGCTATGT 626
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 481 AGCCTCTGACCAAGTTGGCAAGGTTCCACTGTATTGGGGAATAACAGCTGATGGATATGT 540
Query 627 GGCATTTGCTGATGATGTTGACTTACTAAAAGGTGCTTGTGGCAAGTCTCTTGCGTCTTT 686
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 541 GGCATTTGCTGATGATGTTGAGTTGCTAAAAGGTGCTTGTGGCAAGTCTCTTGCGTCTTT 600
Query 687 CCCTCAAGGCTGTTATTACTCGACGGCATTAGGTGGGCTTAGGAGCTTCGAGAACCCTAA 746
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 601 CCCTCAAGGCTGTTATTACTCAACGGCGTTAGGTGGGCTTAGGAGCTTCGAGAACCCTAA 660
Query 747 GAACAAGATCACTGCAGTTCCTGCTAATGAGGGAGAAATTTGGGGAGCTACCTTCAAGGT 806
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 661 GAACAAGATCACTGCAGTTCCTGCTAATGAGGAAGAAATTTGGGGAGCCACCTTCAAGGT 720
Query 807 GGAAGGAGCAACAGTTCTTGCAGATTGAAAATGAAAGAGAA-ACACAAA-A-GAAGTTTC 863
|||||||||||||||||||||||||||| || |||||||| | | ||| | |||| | |
Sbjct 721 GGAAGGAGCAACAGTTCTTGCAGATTGAGGATTAAAGAGAACAAAAAAAGAAGAAGATCC 780
Query 864 ATGTCTCTTAAAGCTCTCGAACTGTAACAGCACAAACaaa-aaaaaat-atgtaggaaaa 921
|||||||||||| |||||||||||||||||| ||| ||| ||||||| |||||||||||
Sbjct 781 ATGTCTCTTAAA--TCTCGAACTGTAACAGCA-AAA-AAATAAAAAATGATGTAGGAAAA 836
Query 922 acaaaaaGCTGTTCTATGAGTACTTGAAGCTATCAATGGTTGGTGATAATGTGTGTAGTG 981
||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||
Sbjct 837 ACAAAAAGCTGTTCTATGAGTTCTTGAAGCTACCAATGGTTGGTGAT---GTGTGTAGTG 893
Query 982 TTGTATCTCTCTTATGTCTTATGCTTCTTTGTACAGCACGTGTGTGTCTTCTGGTGTTAT 1041
||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 894 TTGTATCTCTCTTATGTTTTATGCTTCTTTGTACAGCCCGTGTCTGTCTTCTGGTGTTAT 953
Query 1042 TAGTGTCTTCTTCCTAATAAGTT 1064
|||||||||||||||||||||||
Sbjct 954 TAGTGTCTTCTTCCTAATAAGTT 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5