BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19190.1
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488803 jgi|Araly1|488803|fgenesh2_kg.6__1937__AT5G19190.1 1057 0.0
> Ahg488803 jgi|Araly1|488803|fgenesh2_kg.6__1937__AT5G19190.1
Length=649
Score = 1057 bits (572), Expect = 0.0
Identities = 631/657 (96%), Gaps = 14/657 (2%)
Strand=Plus/Plus
Query 1 CCACTTGAAGCAAACCCAA-AAGAAAA-ACACACACAAGACTTGGCTTACAAAACAAACA 58
||||||||||||||||||| || |||| |||||||||||||||| |||||||||||| ||
Sbjct 1 CCACTTGAAGCAAACCCAATAA-AAAACACACACACAAGACTTGTCTTACAAAACAACCA 59
Query 59 AGTCTTCAAGAAACTTGGAAAGCTAAGAGCTATGGCTATGGAGTTAGAGCTTGATGATGA 118
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGTC-TCAAGAAACTTGGAAAGCTAAGAGCTATGGCTATGGAGTTAGAGCTTGATGATGA 118
Query 119 TGTCTTCTTTGCAGACATAAGCAAACAGATCTCTCTTCTCATCATGGATGAAGATGAACA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGTCTTCTTTGCAGACATAAGCAAACAGATCTCTCTTCTCATCATGGATGAAGATGAACA 178
Query 179 CTTAAACCCTGTTtctctctcttcctcctcctcctctctctcATTCCAGGGTTTGTTCAG 238
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 CTTAAACCCTGTTTCTCTGTCTTCCTCCTCATCCTCTCTCTCATTCCAGGGTTTGTTCAG 238
Query 239 AGGAGGTTACCAAACGGCTCCATATATGTATCAACAAGAACAGAGCAAAGGGACTGGTGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGGAGGTTACCAAACGGCTCCATATATGTATCAACAAGAACAGAGCAAAGGGACTGGTGT 298
Query 299 GTTCATCCCTAAATCGTCTCAGCCTAGAAGAAGACCTCATCATCATCAGAAGCAAGGTAG 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTTCATCCCTAAATCTTCTCAGCCTAGAAGAAGACCTCATCATCATCAGAAGCAAGGTAG 358
Query 359 GTATAGTTCCTTCAACGCCAAGCAACAACACTCTCTTCATCAAAACAGACAAGAGTATCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTATAGTTCCTTCAACGCCAAGCAACAACACTCTCTTCATCAAAACAGACAAGAGTATCA 418
Query 419 GCAA-A-ATC-ATGAGAACTCAAGAAGTACTCTCACCACTCACAACAATAACAACAACAA 475
|| | | | |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 419 TCAGCAGAGCCATGAGAACTCAAGAAGTACTGTCACCACTCACAACAA---CAACAACAA 475
Query 476 GAGCAACATGAACAGCACTAGTGTTCATGCTTCTATCCCAAGAAGAAGCTACAGAGATGC 535
|||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 476 GAGCAACATGAACA-C--TAATGTTCATGCTTCTATCCCAAGAAGAAGCTACAGAGATGC 532
Query 536 ATCATCTATCTACACTTGATTAATTTTAACAAATATTCTTCTGTGTGATCAATTCATATA 595
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ATCATCTATCTACACCTGATTAATTTTAACAAATATTCTTCTGTGTGATCAATTCATATA 592
Query 596 ATTT-AAATTAGATGCATAAGATTTATTTGTTTGTAAATTCAGCGAACAATAAAAGG 651
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 593 ATTTTAAATTAGATGCATAAGATTGATTTGTTTGTAAATTCAGCGAACAATAAAAGG 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24474912714
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5