BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19220.1
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488807 jgi|Araly1|488807|fgenesh2_kg.6__1941__AT5G19220.1 2785 0.0
> Ahg488807 jgi|Araly1|488807|fgenesh2_kg.6__1941__AT5G19220.1
Length=1712
Score = 2785 bits (1508), Expect = 0.0
Identities = 1652/1721 (96%), Gaps = 12/1721 (1%)
Strand=Plus/Plus
Query 1 TCTCTTTTATCTTCCCCTCTCTTCAAACCCTTCAAGAGACAATCTTTCCTGCGAAAATGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTTTTATCTTCCCCTCTCTTCAAACCCTTCAAGAGACAATCTTTCCTGCGAAAATGG 60
Query 61 TGGTCTCTGCTGACTGCAGAATCTCCCTCTCTGCCCCTAGCTGCATACGTAGTAGCTCCA 120
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 61 TGGTCTCTGCTGACTGCAGAATCTCCTTCTCTGCCCCGAGCTGCATACGTAGTAGCTCCA 120
Query 121 CGGGATTGACTAGGCACATTAAGCTTGGCAGCTTCTGCAATGGTGAGCTCATGGGGAAGA 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGGCTTGACTAGGCACATTAAGCTTGGCAGCTTCTGCAATGGTGAGCTCATGGGGAAGA 180
Query 181 AGCTCAACTTGTCTCAGCTTCCAAACATTCGTCTTCGATCTTCTACTAACTTCTCTCAGA 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AGCTCAACTTGGCTCAGCTTCCAAACATTCGTCTTCGATCTTCTACTAACTTCCCTCAGA 240
Query 241 AGAGAATTTTAATGTCTCTAAATAGTGTAGCTGGGGAGAGTAAGGTACAAGAACTTGAGA 300
||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGAAAATCTCAATGTCTCTAAATAGTGTAGCTGGAGAGAGTAAGGTACAAGAACTTGAGA 300
Query 301 CTGAGAAAAGGGATCCAAGGACAGTTGCTTCCATTATTCTTGGAGGTGGAGCAGGAACTC 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGAGAAAAGGGATTCAAGGACAGTTGCTTCCATTATTCTTGGAGGTGGAGCAGGAACTC 360
Query 361 GACTCTTTCCTCTCACAAAACGCCGCGCCAAGCCTGCCGTTCCTATCGGGGGAGCCTATA 420
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 GTCTCTTTCCTCTCACGAAACGCCGCGCCAAGCCTGCTGTTCCTATCGGGGGAGCCTATA 420
Query 421 GGTTGATAGATGTACCAATGAGCAATTGTATTAACAGCGGAATCAACAAAGTCTACATAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTTGATAGATGTACCAATGAGCAATTGTATTAACAGCGGAATCAACAAAGTCTACATAC 480
Query 481 TCACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCTTACAACTCCAATG 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 TCACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCGTACAACTCCAATG 540
Query 541 GACTTGGCTTTGGAGATGGCTATGTTGAGGTTCTTGCGGCCACTCAAACGCCAGGAGAAT 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGTTGGCTTTGGAGATGGCTATGTTGAGGTTCTTGCGGCCACTCAAACGCCAGGAGAAT 600
Query 601 CTGGTAAAAGGTGGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCG 660
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 CTGGTAACAGGTGGTTCCAAGGTACAGCAGATGCAGTTCGGCAATTCCATTGGCTTTTCG 660
Query 661 AGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCACCTCTACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCACCTCTACA 720
Query 721 GGATGGATTACATGGATTTTATACAGGATCATCGGCAGAGTGGCGCGGATATAAGCATTT 780
|||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 721 GGATGGATTATATGGATTTTGTACAGGATCATCGGCAGAGTGGCGCAGATATAAGCATTT 780
Query 781 CCTGCATACCAATAGATGACAGACGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTGCATACCAATAGATGACAGACGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACA 840
Query 841 AAGGAAGAGTTATCTCATTCAGTGAAAAACCTAAAGGAGACGACCTGAAAGCAATGGCAG 900
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 AAGGAAGAGTTATCTCTTTCAGTGAAAAACCTAAAGGAGACGAACTGAAAGCAATGGCAG 900
Query 901 TAGACACAACTATTTTAGGACTTTCCAAGGAGGAAGCTGAAAAGAAACCATACATAGCTT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 TAGACACAACTATTTTAGGACTTTCCAAGGAGGAAGCTGAAAAGAAACCATACATAGCGT 960
Query 961 CAATGGGAGTTTATGTTTTCAAAAAAGAAATACTGTTAAATCTCTTGAGATGGCGTTTCC 1020
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 961 CAATGGGAGTTTATGTTTTCAAGAAAGAAATACTGTTGAATCTCTTGAGATGGCGTTTCC 1020
Query 1021 CCACAGCAAACGACTTTGGTTCAGAGATTATACCCTTCTCAGCTAAAGAATTCTATGTGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCACAGCAAACGACTTTGGTTCAGAGATTATACCCTTCTCAGCTAAAGAATTCTATGTGA 1080
Query 1081 ATGCTTATCTCTTTAATGACTACTGGGAAGATATAGGAACAATAAGATCTTTCTTCGAGG 1140
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1081 ATGCTTATCTCTTTAATGACTACTGGGAAGATATAGGAACGATAAGATCTTTCTTTGAGG 1140
Query 1141 CGAATCTTGCACTCACTGAGCATCCTGGGGCATTTAGTTTCTACGACGCGGCAAAACCAA 1200
| || || || |||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1141 CAAACCTCGCCCTCACTGAGCATCCCGGGGCATTTAGTTTCTACGACGCAGCGAAACCAA 1200
Query 1201 TATATACATCAAGGAGAAACCTGCCACCATCAAAAATAGACAACTCTAAGCTCATCGATT 1260
| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1201 TTTATACATCAAGGAGAAACCTGCCACCATCAAAAATAGACAACTCTAAGCTTGTTGATT 1260
Query 1261 CAATCATTTCTCATGGAAGCTTCTTAACCAACTGCTTGATTGAGCATAGCATTGT-GGGA 1319
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1261 CGATCATTTCTCATGGAAGCTTCTTAACCAACTGCTTGATTGAGCACAGCATTGTAGGGA 1320
Query 1320 ATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGGACACTGTGATGCTTGGGGCAGAT 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 -TTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGGACACTGTGATGCTTGGGGCAGAT 1379
Query 1380 TACTACGAAACTGAAGCAGAAGTTGCAGCACTACTTGCTGAGGGAAACGTTCCCATTGGA 1439
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1380 TACTACGAAACTGAAGCAGAAGTTGCATCACTACTTGCTGAGGGAAAAGTTCCCATTGGA 1439
Query 1440 ATAGGAGAGAACACAAAAATTCAAGAATGCATAATAGACAAGAATGCTAGAGTTGGAAAG 1499
||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 1440 ATAGGAGAGAACACAAAAATTAAAGAATGCATAATAGACAAGAATGCTAGAGTCGGGAAG 1499
Query 1500 AATGTAATCATCGCAAACTCGGAGGGAATACAAGAAGCAGATAGGTCATCCGATGGATTT 1559
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AATGTAATAATCGCAAACTCGGAGGGAATACAAGAAGCAGATAGGTCATCCGATGGATTT 1559
Query 1560 TACATCAGATCTGGCATTACTGTAATCTTGAAGAACTCAGTAATTAAAGATGGAGTTGTG 1619
|||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 1560 TACATCAGATCTGGCATTACAGTAATCTTGAAGAATTCAGTAATTAAAGATGGAATTGTG 1619
Query 1620 ATATGATACTTTTAAGATCTAATTGTAAGAACTGAGAACTAAAAAATGCAGAGCATAAAA 1679
|||||||||||||||| | | |||| | ||||||||| || ||||||| ||||||
Sbjct 1620 ATATGATACTTTTAAGTTTTGATTG------C-GAGAACTAAGAA-TGCAGAGTATAAAA 1671
Query 1680 GTCAACAA-TAAATTAC-AAAGAAATTTATTTGATAGTGAT 1718
||||| || ||||||| |||||||||||||||||| ||||
Sbjct 1672 GTCAAAAACTAAATTATTAAAGAAATTTATTTGATAATGAT 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64981957970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5