BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19250.1
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488808 jgi|Araly1|488808|fgenesh2_kg.6__1942__AT5G19250.1 1020 0.0
Ahg941471 jgi|Araly1|941471|scaffold_602015.1 898 0.0
> Ahg488808 jgi|Araly1|488808|fgenesh2_kg.6__1942__AT5G19250.1
Length=802
Score = 1020 bits (552), Expect = 0.0
Identities = 728/809 (90%), Gaps = 27/809 (3%)
Strand=Plus/Plus
Query 12 AGAGAAAAGATTCATCATCACC-AA-AA--GATCATAAAAGAAGTAAAGAAGAAGAACTT 67
||||||||||||||||| |||| || || ||||| |||||||| |||||||||||
Sbjct 1 AGAGAAAAGATTCATCACCACCAAACAATTAATCATCAAAGAAGT-AAGAAGAAGAA--G 57
Query 68 CTCTGCATCAATGGCGATCTCCAAGCTCCATCTACTCTTCCTTCTCTCAGTCTTTCTCTC 127
|||| || |||||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 58 CTCTACAACAATGGCGATTTCCAAGCTCCATCTACTGTTTCTTCTCTCAGTCTTCCTCTC 117
Query 128 CCTTCATCCTCTTGTTCTTTCCGACACC-G--CCGATGAAGAAGATGTTCTTCTTACAGG 184
|||||||| || |||||||||| ||||| | |||||||||||||||||||| ||||||
Sbjct 118 CCTTCATCGTCCTGTTCTTTCCAACACCGGTAACGATGAAGAAGATGTTCTTCGTACAGG 177
Query 185 CATCAACAGTTACAGAGCATCACTAAACCTAACAACCTTAATACACAACCACAACGCAGA 244
|||||||| |||||||||| |||||||||||||||||||||||| ||| | ||||||||
Sbjct 178 CATCAACAATTACAGAGCAGGACTAAACCTAACAACCTTAATACATAACGAAAACGCAGA 237
Query 245 ATGTCTAGCAGACGAAATCGCAGACCAATTCAAGAACCAACCTTGCACAAACACCACTGG 304
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 ATGTCTTGCAGACGAAATCGCAGACCAATTCAAGAACCAGCCTTGCACAAACACCACTGG 297
Query 305 CTCAGCCTCTGTCCCTGGAACCACA-CCTGGATTCCCAAACTTGCCTAACCTCCTCTCAA 363
|||| ||| || ||||||||| || ||||||||||||||||||||||| |||||||| |
Sbjct 298 CTCATTCTCAGTTCCTGGAACC-CAGCCTGGATTCCCAAACTTGCCTAAGCTCCTCTCCA 356
Query 364 AATGCCGCCTCAACCCTACCGTAACTAGAGACGGTGCGATTTTGCCAGCTTGTGTTCCCA 423
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 357 AATGCCGCCTCAACCCTACCGTTACTAGAGACGGTGCGATTTTGCCAGCTTGTGTTCCCA 416
Query 424 ACCTTGATCCTAGCCTTGTCTTGACCAATTTCACA-ATGTCACAGTACTCCAAGGACCTG 482
|||||||||| || ||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 417 ACCTTGATCCAAGTCTTGTCTTGACCAATTTCACACA-GTCTCAGTACTCCAAGGACCTC 475
Query 483 AATGATTCTAAGTTCACTGGTATTGGTATTGGTTCTGATGATAATTGGATTGTTGTTGTC 542
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 476 AATGATTCTAAGTTCACTGGAATTGGTATTGGTTCTGATGATAACTGGATTGTTGTCGTT 535
Query 543 CTCACTACTAGCACACCGGAGGGTAGCTATTCTCCGGCCTCTAACTCAGGAGCTTTCGCG 602
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 536 CTCACTACTAGCACACCGGAGGGTAGCTATTCTCCGGCCTCTAACTCGGGAGCTTTCTCG 595
Query 603 TTCGGAGTTAATGGCcttgtttcttcaagtttgatg-t--t-t--cttctcttttgcttc 656
|||||||||||||||||||||||||| ||||||||| | | | ||||||||||| |||
Sbjct 596 TTCGGAGTTAATGGCCTTGTTTCTTCGAGTTTGATGATGATGTTTCTTCTCTTTTGTTTC 655
Query 657 ttcatgttttgagtcccttttttgGTGTTT-ATCTAAACTACCTCGCTGTCTTTGTTTCT 715
||||||||||||||||| ||||||| |||| || ||||| | ||| |||||||||||||
Sbjct 656 TTCATGTTTTGAGTCCCATTTTTGG-GTTTTATTTAAACGAGCTCATTGTCTTTGTTTCT 714
Query 716 TATTTATGTTGTTATTATGGTGATTTGTATGAATTCGTAAGGCATTAAAGAGAATAAC-- 773
|||| ||||||||||||||||||||||||||||||| || ||||| |||||||| | |
Sbjct 715 TATT-ATGTTGTTATTATGGTGATTTGTATGAATTCATATGGCATAAAAGAGAAGATCCC 773
Query 774 --AATATTATCATTAAGTTTCTGCTTCTT 800
|||||||||||||||||||| ||||||
Sbjct 774 GTAATATTATCATTAAGTTTCTTCTTCTT 802
> Ahg941471 jgi|Araly1|941471|scaffold_602015.1
Length=637
Score = 898 bits (486), Expect = 0.0
Identities = 582/627 (93%), Gaps = 11/627 (2%)
Strand=Plus/Plus
Query 68 CTCTGCATCAATGGCGATCTCCAAGCTCCATCTACTCTTCCTTCTCTCAGTCTTTCTCTC 127
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 11 CTCTGCATCAATGGCGATTTCCAAGCTCCATCTACTCTTTCTTCTCTCAGTCTTTCTCTC 70
Query 128 CCTTCATCCTCTTGTTCTTTCCGACACCGCCGATGAAGAAGATGTTCTTCTTACAGGCAT 187
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 71 CCTTCATCGTCTTGTTCTTTCCGACACCGCCGTTGAAGAAGATGCTCTTCGTACAGGCAT 130
Query 188 CAACAGTTACAGAGCATCACTAAACCTAACAACCTTAATACACAACCACAACGCAGAATG 247
||||| |||||||||| |||||||||||||||||||||||| ||| | |||||||||||
Sbjct 131 CAACAATTACAGAGCAGGACTAAACCTAACAACCTTAATACATAACGAAAACGCAGAATG 190
Query 248 TCTAGCAGACGAAATCGCAGACCAATTCAAGAACCAACCTTGCACAAACACCACTGGCTC 307
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 191 TCTTGCAGACGAAATCGCAGACCAATTCAAGAACCAGCCTTGCACAAACACCACTGGCTC 250
Query 308 AGCCTCTGTCCCTGGAACCACA-CCTGGATTCCCAAACTTGCCTAACCTCCTCTCAAAAT 366
| ||| || ||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 251 ATTCTCAGTTCCTGGAACC-CAGCCTGGATTCCCAAACTTGCCTAAGCTCCTCTCCAAAT 309
Query 367 GCCGCCTCAACCCTACCGTAACTAGAGACGGTGCGATTTTGCCAGCTTGTGTTCCCAACC 426
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GCCGCCTCAACCCTACCGTTACTAGAGACGGTGCGATTTTGCCAGCTTGTGTTCCCAACC 369
Query 427 TTGATCCTAGCCTTGTCTTGACCAATTTCACA-ATGTCACAGTACTCCAAGGACCTGAAT 485
||||||| || ||||||||||||||||||||| | ||| ||||||||||||||||| |||
Sbjct 370 TTGATCCAAGTCTTGTCTTGACCAATTTCACACA-GTCTCAGTACTCCAAGGACCTCAAT 428
Query 486 GATTCTAAGTTCACTGGTATTGGTATTGGTTCTGATGATAATTGGATTGTTGTTGTCCTC 545
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 429 GATTCTAAGTTCACTGGAATTGGTATTGGTTCTGATGATAACTGGATTGTTGTCGTTCTC 488
Query 546 ACTACTAGCACACCGGAGGGTAGCTATTCTCCGGCCTCTAACTCAGGAGCTTTCGCGTTC 605
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 489 ACTACTAGCACACCGGAGGGTAGCTATTCTCCGGCCTCTAACTCGGGAGCTTTCTCGTTC 548
Query 606 GGAGTTAATGGCcttgtttcttcaagtttgatg-t--t-t--cttctcttttgcttcttc 659
||||||||||||||||||||||| ||||||||| | | | ||||||||||| ||||||
Sbjct 549 GGAGTTAATGGCCTTGTTTCTTCGAGTTTGATGATGATGTTTCTTCTCTTTTGTTTCTTC 608
Query 660 atgttttgagtcccttttttgGTGTTT 686
|||||||||||||| ||||||| ||||
Sbjct 609 ATGTTTTGAGTCCCATTTTTGG-GTTT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29735875260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5