BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19400.1
Length=3919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488829 jgi|Araly1|488829|fgenesh2_kg.6__1963__AT5G19400.1 4948 0.0
> Ahg488829 jgi|Araly1|488829|fgenesh2_kg.6__1963__AT5G19400.1
Length=3878
Score = 4948 bits (2679), Expect = 0.0
Identities = 3220/3473 (93%), Gaps = 69/3473 (2%)
Strand=Plus/Plus
Query 464 AAGGGTCCTTCTAAAGCAGAAC-AAATTGCACAA-CTCAAGCTGCAGTTCAGAACATTCC 521
||||||||||||||| ||| || ||||||| || | |||||||||||||||||||||||
Sbjct 450 AAGGGTCCTTCTAAACCAG-ACGTAATTGCA-AACCACAAGCTGCAGTTCAGAACATTCC 507
Query 522 TTTCAGAAGCAACTGGGTTTTACCATGACATGATCTTAAAAATTAGATCAAAGTATGGCC 581
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 508 TTTCAGAAGCAACTGGGTTTTACCATGATATGATCTTAAAAATTAGATCAAAGTATGGTC 567
Query 582 TTCCCCTGGGTTCTTTTTCTGAGGATCAACAGAGTCAAAATTTGTCTGATAAAGATGGAA 641
|||||||||||| |||||||||||||||| ||| |||||||||| ||||||| ||||| |
Sbjct 568 TTCCCCTGGGTTATTTTTCTGAGGATCAAGAGACTCAAAATTTGGCTGATAAGGATGG-A 626
Query 642 AAG-AGTTAGCAGAAGTTCAAA-AAGCCTTGAAATCTTGTCATCGTTGCTTAATATACCT 699
||| || || |||||||| ||| ||||||| ||| |||||||||||||||||||||||
Sbjct 627 AAGAAGGTACCAGAAGTT-AAATTAGCCTTGGTATCGTGTCATCGTTGCTTAATATACCT 685
Query 700 TGGTGATCTGGCTCGGTATAAAGGAATGTAT-GCAGAGGGGGATTCCAGGAGCAGACAGT 758
||||||||||||||||||||||||| ||| | || ||||||||||||| || |||| |||
Sbjct 686 TGGTGATCTGGCTCGGTATAAAGGATTGTGTGGC-GAGGGGGATTCCAAGAACAGAGAGT 744
Query 759 ATGCTTCTGCTTCAAGTTACTATTTGCAAGCAGCTTCTCTATGGCCAGCC-AGTGGAAAC 817
||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 745 ATGCTGCTGCTTCAAGTTACTATTTGCAAGCAGCTTCTCTATTGCCAGCCTA-TGGAAAC 803
Query 818 CCACATCATCAGCTTGCAATAGTTGCTTCTTATTCGAGGGATGAGTTTGTAACAACATAT 877
||||||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||
Sbjct 804 CCACATCATCAGCTTGCTATAGTTGCTTCTTATTTGGGGGATGAGTTTACAACAACATAT 863
Query 878 CGTTATTTCCGAAGTTTGGCTGTGGAGTA-TCCTTTCCCAACTGCCCGTGACAACTTGAT 936
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 864 CGTTATTTCCGAAGTTTGGCTGTGGAG-ATTCCTTTCCCAACTGCCCGTGACAACTTGAT 922
Query 937 TGTTGCTTTTGATAAGAATCGTCAGAGTTATGAAAAATTGTTTGTGCCCTCCAAAGACTC 996
|||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 923 TGTTGCTTTTGAAAAGAATCGTCAGAGTTATGCCCAATTGTTTGTGGCTTCCAAAGACTC 982
Query 997 ATCCAAGAGGCTGACTGGTAAAGGAAGAGGGAAAGGTGCAGATATTTCATTGAAAGATGC 1056
||||| ||||| |||||||||||||||||| ||||||| ||||| ||||| ||||||||
Sbjct 983 ATCCAGGAGGCCGACTGGTAAAGGAAGAGGTAAAGGTGAAGATACTTCATCAAAAGATGC 1042
Query 1057 GACCTTGGTAGCTGGTCCTGAGAAGGATAAAGTAACTATTGCAAATGAGATGCTCAAAGC 1116
|| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1043 GAACTTGGTAGCTGGTCCTTTGAAGGATAAAGTAACTATTTCAAATGAGATGCTCAAAGC 1102
Query 1117 ATTCAGCATTAGATTTGTTCATCTCAATGGGATTCTTTTTACCCGAACAAGCCTGGAGAC 1176
|||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1103 ATTCTGCACTAGATTTCTTCGTCTCAATGGGATTCTTTTTACCCGAACAAGCCTGGAGAC 1162
Query 1177 ATTCTTTGATGTTCTTGCCTCCACTAGCAGCAGTTTACGAGAGGTGATTTCTTTGGGCTC 1236
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1163 ATTCTTAGATGTTCTTGCCTCCACTAGCAGCAGTTTACGAGAGGTCATTTCTTTGGGCTC 1222
Query 1237 AGCTAAAGAGCTGACTTTGGGCATAGACACCAGTGACAGCGCACTTTTCATTGTTAGAGT 1296
|| | | || |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1223 AGTTGACGAACTGAGTTTGGGCATAGACACCAGTGACAGCGCACTTTTCATTGTTAGACT 1282
Query 1297 CGTGACAATGCTTATATTTAGTGTTCATAACTCAAAGAAAGAGACAGAAGGTCAGTCATA 1356
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1283 CGTGACAATTCTTATATTTAGCGTCCATAACTCAAAGAAAGAGACAGAAGGTCAGTCATA 1342
Query 1357 TGCAGAGATTGTACAGCGTGTTGAGCCTGCCAGAAACTCCTTAACAGCTAG-TTTCGAGT 1415
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 1343 TGCAGAGATTGTACAGCGTGTTGAGCCTGCCAGAAACTCCTTAACGGCTAGCTTT-GAGT 1401
Query 1416 TACTTGGACTCGTAATAGAGAAGTGTGTGCAACTGGGAGATCCTTCGTCGAGTTACTTTT 1475
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1402 TACTTGGACACGTAATAGAGAAGTGTGTGCAACTGGGAGATCCTTTGTCGAGTTACTTCT 1461
Query 1476 TGCCTGGTGTCTTAGTTTTTGTTGAATGGTTGGCCTGTTGTCCTGACATTGCACTGGGAA 1535
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1462 TGCCCGGTGTCTTAGTTTTTGTTGAATGGTTGGCCTGTTGTCCTGATGTTGCACTGGGAA 1521
Query 1536 GTGATCCCGATGATAGACAGACTGCTGTAAGAAATAGCTTTTGGAACCAGTTTGTTGTCT 1595
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1522 GTGATCCGGATGATAGACAGACTGCTGTAAGAAATAGCTTTTGGAACCAGTGTGTTACCT 1581
Query 1596 TCTTCAATCAAGTCTTATCGCTTGGACCTACGTTTATTGATGATGTCGAAGACGAGACTT 1655
| || |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1582 TGTTTAATCAAATCTTGTCGCTTGGACCTATGTTTATTGATGATGTCGAAGACGAGACTT 1641
Query 1656 GCTTCTCAAACATGAGCTTGTATGATGAAAGAGAAACTGAAAACCGGCTTGCACTATGGG 1715
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1642 GCTTCTCAAACATGAGCTTGTATGATGAAAGAGAAACTGAAAACCGACTTGCACTATGGG 1701
Query 1716 AGGACTATGAACTAAGAGGATTCTTGCCACTGCTTCCAGCTCAGACGATTCTCAACTTCT 1775
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1702 AGGACTATGAACTAAGAGGATTCTTGCCACTGCTTCCAGCTCAGACCATTCTCGACTTCT 1761
Query 1776 CAAGGAAACATTCGTTTGGAACTGAAGGTCCCAAGGAAAAGAAAGCTCGTATAAAGAGGA 1835
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 CAAGGAAACATTCCTTTGGAACTGAAGGTCCCAAGGAAAAGAAAGCTCGTATAAAGAGGA 1821
Query 1836 TCTTT-GCAGCAGGGAAAGCTTTGACCAGTGTGATCAAAGTTGATCAGAATCATGTATAT 1894
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 T-TTTAGCAGCAGGGAAAGCTTTGACCAGTGTGATCAAAGTTGATCAGAATCATGTATAT 1880
Query 1895 TTTGATTCAAAGAAGAAGAAGTTTCTTGTTGGTGTAAAACCGGCAGATGACTTTCTGGAT 1954
||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 1881 TTTGATTCAAAGAAGAAGAAGTTTCTTGTTGGTATAAAACCGTCAGATGACTTGCTGGAT 1940
Query 1955 TCTCATTCAAGCCCACCTAAAGCTTGTAATGCTTTGCAAGATAACCAGGTAATGATAG-A 2013
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| | |
Sbjct 1941 TCTCATTCAAGCCCACCTAAAGCTTGTAATACTTTGCAAGATAACCAAGTAATGAT-GAA 1999
Query 2014 TCATAACTCGCCAATAATGCAGCTTGATCAACAGATTTATATGGGTGAGGAAGATGATGA 2073
||||||||||||| | |||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 2000 TCATAACTCGCCAGTGATGCAGCTTGGTCAGCAGATTTATATGGGTGAGGAGGATGATGA 2059
Query 2074 TGATGAAGTAATTGTTTTCAAGCCGCTTGTTACTGAAAAGAGGAAAGAGGCTTCTGACCA 2133
|||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||
Sbjct 2060 TGATGAAGTAATTGTTTTCAAGCCTCTAGCTACTGAAAAGAAGAAAGAGGCTTCTGACCA 2119
Query 2134 AATATATGTTCCTAGTGGAGGCTTCAGGAAATCTGATCAAGTTACTACTATGGGGGACTT 2193
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2120 AATATATGTTCCTAGTGGAGGCTTCAGGAAACCTGATCAAGTTGCTACTATGGGGGACTT 2179
Query 2194 TAAAGCTTTAAGTGGATCTGATGTAGCTTTTCATGAAAATCAAATTCTGCAAGCTAGAGG 2253
||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 2180 TAAAGCTTTAAGTGGTTCTGATGCAGCTTTTCATGAAAATCAACTTCTGCAAGCTAGAGG 2239
Query 2254 CAATGCGAGTATTCAAGTGCCTGCATCTGTTGGTGCTAACCTTCTGGGACCTCTACAGCC 2313
|||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 2240 CAATGCGAGTATTCAAGTACCTGCATCTGTTGGTTCTAACCTTCTGGGACTTCTTCAGCC 2299
Query 2314 ATCAACCCAGTCTCAAGCTATGCATATGCAACAAGTTCAGACGCAGGTTCAAGTACCTGC 2373
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2300 ATCAACCCAGGCTCAAGCTATGCATATGCAACAAGTTCAGACGCAGGTTCAAGTGCCTGG 2359
Query 2374 ATCTGTTGGTGCTAACCTTCTGGGACTTCTTCTGACATCAACCCAGTCTCAAGCTATGCA 2433
|||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 2360 ATCTGTTGGTTCTAACCTTCTGGGACTTCTTCAGCCATCAACCCAGTCTAAAGCTATGCA 2419
Query 2434 TATGCAACAAGTTCAGACGCAGGCAGTGAATCCTCAGCCAGCCCAATCACTAGCTGCTTC 2493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2420 TATGCAACAAGTTCAGACGCAGGCAGTGAATCCTCAGCCAGCCCAATCACTAGCTGCTGC 2479
Query 2494 TCGACTTCAGCCAATACAATCACAGGTCG--C-A---CAACCACTGCCATCACGGGTTGT 2547
||||||||||||| ||||||||||||| | | |||||||||||||||||||||||
Sbjct 2480 AAGACTTCAGCCAATTCAATCACAGGTCGCACAACTTCAACCACTGCCATCACGGGTTGT 2539
Query 2548 GCACTTTCAACAAACTCAAGCTCAGGTTTCACATGTTTCACCGGCCCACTCGCAATCTAC 2607
|||||||||||||||||| || ||| |||||||||||||| ||||||| | |||||| |
Sbjct 2540 GCACTTTCAACAAACTCAGGCACAGCTTTCACATGTTTCAGCGGCCCAGACACAATCTGC 2599
Query 2608 TTCCTTTGGTGGTGGTAGCAAGTGGTCACCCGAAGAAGCTGCTTCTCTTGCTAGTAGCCT 2667
|||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2600 TTCCTTTGTTGGTGGTAGCAAGTGGTCACCAGAGGAAGCTGCTTCTCTTGCTAGTAGCCT 2659
Query 2668 ATCTGGGTTTGCTCAGCTGGGTAATGGTCATGTAATGAGGAATGAGATGCAAGGAAATCA 2727
|||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2660 ATCTGGTTTTGCTCAGATGGGTAATGGTCATCTAATGAGGAATGAGTTGCAAGGAAATCA 2719
Query 2728 TGGAGTTTCCTATTACCCTGCACACTCATTACCCGTCCACCAGTCTTACAATGGCAATGG 2787
||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||
Sbjct 2720 TGGAGTTTCCTATTACCCTGCACACCCATTACCGGTCCACCAGTCTTACAATGTCAATGG 2779
Query 2788 TATGGGTGGTATGCCATATTCTCAGTCAAGAACACCTGAAGCTGTATTCCCACCCAAAAT 2847
|||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||
Sbjct 2780 TATGGGTGGTATGCCATATTCTCAGTCACGAACATCTGAAGCTGTATTGACACCCAACAT 2839
Query 2848 TGATCCTGTTTTATCATCCGGAGTTGTTGCTGATGGCCTGGGCGTCCAATCTTCATTAGC 2907
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2840 TGATACTGTTTTGTCATCCGGAGTTGTTGCTGATGGCCTGGGCGTCCAATCTTCGTTAGC 2899
Query 2908 AAAGAAAAATCCAATCAGTAGAGCC-TTCAGGCATCTTGGCCCTCCGCCTGGGTTTAACT 2966
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2900 AAAGAAAAATCCAATCAGTAGAGCCATT-AGGCATCTTGGCCCTCCGCCTGGGTTTAACT 2958
Query 2967 CTG-TCCCAGCTAAGCTGCAAAAGGAGCCAGCACCTGGTTCGGAATTGTCTGGCAACAAC 3025
||| |||| |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2959 CTGTTCCC-TCTAAGCTGCAAAAGGAGCCAGCACCTGGTTCGGATTTTTCTGGCAACAAC 3017
Query 3026 CACCTACCGGTTGATGATTACAGCTGGTTGGATGGATACCAAGCTCAATCTTCTCGAGGC 3085
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3018 AATCTACCAGTTGATGATTACAGCTGGTTGGATGGATACCAAGCTCAATCTTCTCGAGGC 3077
Query 3086 GTTGGGCTGAACAGTTCTTTGAATTACGCCACCTCTGGGAAACCAGAACACTTGGGTAGT 3145
| ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||| ||
Sbjct 3078 GCTGGGCCGAACAGTTCTTTGAATTACGTCGCCTCTGGGAAACCAGAACACATGGGTGGT 3137
Query 3146 ACTGGCAATGGACTGAACGGGCCTGCCAACTTTCCGTTTCCTGGAAAACAAGTTCCAACT 3205
|| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 3138 ACCAGCAATGGACTGAACGGGGTTGCCAATTTTCCGTTTCCTGGAAAACAAGTTCCAACA 3197
Query 3206 TCACAGGTCCAAGCAGATTTTCCTTATTTCCAGAACCCTCAGAAAGATAACTTTGTGGAC 3265
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3198 TCACAGGTCCAAGCAGATTTTCCTTATTTCCAGAACCCTCAGAAAGATACCTTTGTGGAC 3257
Query 3266 AAAAACCATCAGTCAACTCAACTCCCCGAGCAATATCAAGGACAGTCGACTTGGTCGAGT 3325
||||| ||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 3258 AAAAATCATCAATCAGCTCAACTCCCTGAGCAATATCAAGGACATTCGACTTGGTCGAGT 3317
Query 3326 CGTCACTTTGTGTGAGATCAGAATGGAAGAGTAACACGGTAATTGGGAATGATGCAGGTG 3385
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3318 CGTCACTTTGTGTGAGATCAGAATGGAAGAGTAACACGGTAATTGGGAATGATTCAGGTG 3377
Query 3386 AGTGTTACGCAACGTTTATTGCTACCTAACTCCAACTGATCCTTGTTCTGCTGAAGTCTC 3445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3378 AGTGTTACGCAACGTTTATTGCTACCTAACTCCAACTGATCCTTGTTCTGCTGAAGTCTC 3437
Query 3446 TAGTTGGAGTCTTTGTGGCCTTGGCTTCTTGTGGGGCACTTCCTACCTGACGGATTCAGG 3505
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 3438 TAGTTGGAGTCTTTGTGGCCTTGGCTTCTTGTGGGGTACTTCCTACCCGACGGATTCAGG 3497
Query 3506 ACACAGCTCATGTTGGTGAA-GAGATATGTGGTAACAAGAATGAATGGTTCTGTGGAATT 3564
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3498 ACACAGCTCATGTTGGTGAAAGAGATATGTGGTAACAAGAATGAATGGTTCTGTGGAATT 3557
Query 3565 GATAGGAGTAAAGTGCCTTTCTCGTGCTACTTGAGGTGGAGATGTTAAACCTTATGAATA 3624
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3558 GATAGGAGTAAAGTGCCTTTCTCGTGCTACTTGAGGTGGAGATGTTAGACCTTATGAATA 3617
Query 3625 AGAAAGGAACATACGTAGCATGTGGCTCACTCTCGATATCTGAAGCAGTTGTTTGCTGTT 3684
||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 3618 AGAAAGGAA-A--CGTACCTTGTGGCTCACTCTCGATATCTGAAGCAGTTGTTTGCTGTT 3674
Query 3685 TTCTTTTCTTCTTGCGTATGACTGTGTAGCTGTCCGTCCTCTTGCAGCTAtctctctctc 3744
|||||||||| |||||||| | ||||||||||||||||||||||||||||||| | ||||
Sbjct 3675 TTCTTTTCTTTTTGCGTATAAATGTGTAGCTGTCCGTCCTCTTGCAGCTATCT-T-TCTC 3732
Query 3745 tctTGGGTTGCTTTACTTTTATTTCCTCTATATTCTATGCTTGTCTCAAACTTGTCTCTG 3804
|||| || || | || | | || | | || | || ||| | || | |
Sbjct 3733 TCTTA--TT-CTATGCTCGT----C-TCAA-A--CT-T-CT---CTC----T-GT-T-T- 3768
Query 3805 TTTTGCTGTGTCGTTTTAAGTTGAACCATCATAAGGTGTGTGAAACTTTGCAA-TG--AA 3861
| |||||||||||||||||||||| |||||||||||||||| ||||| ||| || ||
Sbjct 3769 T---GCTGTGTCGTTTTAAGTTGAACTATCATAAGGTGTGTGACACTTTTCAAGTGCTAA 3825
Query 3862 T-AA-AAAA-GGGACTCATGTGATAAAACATGATTTGGTGTTGAAATACTTCC 3911
| || |||| ||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 3826 TGAATAAAAAGGGACTCATGTCATAAAACATGATTTGGTGTTGAAATGCTTCC 3878
Score = 484 bits (262), Expect = 2e-135
Identities = 370/418 (89%), Gaps = 24/418 (6%)
Strand=Plus/Plus
Query 22 CTCTCTCTCGCGG-aaaaaaaaaCCCTAGTTTTTCTCTCTTCTCACCGATTTTT-CATTC 79
||||||||||||| |||||||||||||||||| |||||| |||||||||||||| |||||
Sbjct 32 CTCTCTCTCGCGGAAAAAAAAAACCCTAGTTTCTCTCTCCTCTCACCGATTTTTCCATTC 91
Query 80 CGATGCTTCTGGTCGCATAGCCCATCCCCGCAGATCTGTTAATTCCGGTTACATATGAAA 139
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 92 CGATGCTTGTGGTCGCATAG-CCATCCCCGCAGATCTGGTAATTCCGGTTACATATGAAA 150
Query 140 TAA-CATTGAAACA-TTTGATGGATGATGACTTTACAGATGGATAAAACTACTGCTTCCT 197
||| | |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 151 TAACCTTTGAAACATTTTGATGGATGATGACTTTGCAGATGGATAAAACTACTGCTTGCT 210
Query 198 CTTCATGGGAGCGAGCCAAGTCCATA-TATGATGAGA-TTGCTGAGTTAGCAAACAAGCG 255
|| || |||||||||||||||||||| | |||| ||| || |||||||| |||||||||
Sbjct 211 CTCCAAGGGAGCGAGCCAAGTCCATACT-TGATAAGACTT-TTGAGTTAGAAAACAAGCG 268
Query 256 TCAGAA-G--GCT--G----GAAATCCACCTGACCCAAATTTGTTGCAGC-TCTTACGTG 305
|| ||| | ||| | |||||||||||||| |||||||| ||||| || ||||
Sbjct 269 TCGGAAGGCTGCTCAGACTCGAAATCCACCTGACTTAAATTTGTGGCAGCAAATT-CGTG 327
Query 306 AGAAGTATGAAGCAATAATTCTTGAAAG-TCATACCTTTTCTGAGCAGCACAACATTGAA 364
|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 328 AGAATTATGAAGCAATAATTCTTG-AAGATCATACCTTTTCTGAGCAGCACAACATTG-A 385
Query 365 ATT-CCTCTGTGGCAGTTGCATTACAAACGGATTGAATATTTTAGATTACACATCAAT 421
||| |||||||||||||||||||||||||||||||| | ||||||| |||| |||||
Sbjct 386 ATTGACTCTGTGGCAGTTGCATTACAAACGGATTGAAGAGTTTAGATCACACCTCAAT 443
Score = 156 bits (84), Expect = 1e-36
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 2361 TTCAAGTACCTGCATCTGTTGGTGCTAACCTTCTGGGACTTCTTCTGACATCAACCCAGT 2420
||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 2251 TTCAAGTACCTGCATCTGTTGGTTCTAACCTTCTGGGACTTCTTCAGCCATCAACCCAGG 2310
Query 2421 CTCAAGCTATGCATATGCAACAAGTTCAGACGCAGG 2456
||||||||||||||||||||||||||||||||||||
Sbjct 2311 CTCAAGCTATGCATATGCAACAAGTTCAGACGCAGG 2346
Score = 150 bits (81), Expect = 6e-35
Identities = 91/96 (95%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 2265 TTCAAGTGCCTGCATCTGTTGGTGCTAACCTTCTGGGACCTCTACAGCCATCAACCCAGT 2324
|||||||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 2347 TTCAAGTGCCTGGATCTGTTGGTTCTAACCTTCTGGGACTTCTTCAGCCATCAACCCAGT 2406
Query 2325 CTCAAGCTATGCATATGCAACAAGTTCAGACGCAGG 2360
|| |||||||||||||||||||||||||||||||||
Sbjct 2407 CTAAAGCTATGCATATGCAACAAGTTCAGACGCAGG 2442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148120074116
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5