BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19460.1
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941494 jgi|Araly1|941494|scaffold_602038.1 1548 0.0
Ahg941495 jgi|Araly1|941495|scaffold_602039.1 1099 0.0
> Ahg941494 jgi|Araly1|941494|scaffold_602038.1
Length=1162
Score = 1548 bits (838), Expect = 0.0
Identities = 996/1070 (93%), Gaps = 20/1070 (2%)
Strand=Plus/Plus
Query 231 ACGGTGGCGTTCCAGTTCTATGTC-CCTTTCTCCGCTGCGTCA-TTCCCGCGCTTTATCA 288
|||||||||||| ||||||||||| || | ||||||||||| | |||||||||||| |||
Sbjct 91 ACGGTGGCGTTCGAGTTCTATGTCTCC-TCCTCCGCTGCGT-ATTTCCCGCGCTTTTTCA 148
Query 289 GCTGCAACAACTGTTCCGATAAGCTCATCCTTCACGTGGGACGACGTAATCGAGACCGGT 348
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 149 GCTGCAACCACTGTTCCGATAAGCTCCTCCTTCACTTGGGACGACGTAATCGAGACCGGT 208
Query 349 C-GG-GCAG---A-G--T-ACAACTCTTCCGATCTCACCGGATTTTTCGAGAAAATCAAC 399
| || | || | | | ||||||| ||| |||||||||||||| |||||||| || |
Sbjct 209 CGGGAGGAGTATACGCCTCACAACTCCTCCCATCTCACCGGATTTCTCGAGAAAGTCGAT 268
Query 400 CGCTGCAATCGCGGATCCGAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAA 459
| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 269 CTCTGCAAACGCGGATCCGAAAAGTTAGCTGAGTTCATTCCATTTGTTATAGAGGAACAA 328
Query 460 ATCGTTGGTTATATTCATAAAAGATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTT 519
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 329 ATCGTTGGTTATATTCATAAAGGATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTT 388
Query 520 ACATTTTCACAAAATGGTTCTTGTCC-TGACCGTGTTGATGGCTATGTAACGCTTAATCT 578
|||||||||||||||||||||| || ||| || |||||||||| |||||||||||||||
Sbjct 389 ACATTTTCACAAAATGGTTCTTA-CCATGATCGCGTTGATGGCTTTGTAACGCTTAATCT 447
Query 579 GATGCTTCAAAAGCCTGAAGATAGAACCAGAGCAGTTGCAGATGTGATCAAAATATTGGG 638
||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 448 GATGCTTGAAAAGCCTGAAGATAGAACCAAAGCAGTTGCAGATGTGATCAAAGTCTTGGG 507
Query 639 TGACAAAGGAATCATTCCAGGAATACGTAATGAGCTGTATCCTGTGAAACCATCGTTTAA 698
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 508 TGACAAAGGAATCATTCCACGAATACGTAATGAGCTTTATCCTGTGAAACCATCGTTTAA 567
Query 699 TGCCCCGGTCtttttttCTCTAGAGCGTGCTGCTGCTCCTTATTTCGGAATTAAGGGTTA 758
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 568 TGCCCCGGTCATTTTTTCTCTTGAGCGTGCTGCTGCTCCTTATTTCGGAATAAAGGGTTA 627
Query 759 CGGAGTTCACATGAATGGGTATGTAGAAAGAGATGGACAGAAATTACTGTGGATAGGTAA 818
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 628 CGGAGTTCACATGAATGGGTATGTAGAAAGAGATGGACAGAAATTTCTATGGATAGGTAA 687
Query 819 GAGAAGTCTCTCAAAATCCACGTATCCAGGAATGCTTGATCATCTGGTTGCTGGAGGATT 878
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 688 GAGAAGTCTCTCAAAATCCACTTATCCAGGAATGCTTGATCATCTGGTTGCTGGAGGATT 747
Query 879 GCCTCACGGGATTAGCTGCGGTG-GAAATCTAGTAAAGGAATGTGAAGAGGAAGCTGGGA 937
||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||||||||||
Sbjct 748 GCCTCACGGGATTAGCTGCGGTGAGAA-TCTTGTAAAGGAATGCGAAGAGGAAGCTGGGA 806
Query 938 TTTCCAGAGCCATTGCTGATAGGGCAATAGCGGTTGGTGCTGTCTCATATTTGGACATCG 997
|||||| |||||||||||||||||||||||| ||||||||||| ||||| |||| ||||
Sbjct 807 TTTCCAAAGCCATTGCTGATAGGGCAATAGCTGTTGGTGCTGTTTCATACATGGATATCG 866
Query 998 ATCAGTACTGTTTCAAACGTGATGTGCTGTTTTGTTATGATTTGGAACTCCCTGAAGATT 1057
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 867 ATCAGTACTGTTTCAAACGTGATGTGCTTTTTTGTTATGATTTGGAACTCCCTCAAGATT 926
Query 1058 TTGTTCCCAAAAATCAAGATGGAGAAGTTGAGAGCTTCAAGTTGATTCCAGTAGCCCAAG 1117
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 927 TTGTTCCCAAAAATCAAGATGGAGAAGTAGAGAGCTTCAAGTTGATTCCAGTAGCCCAAG 986
Query 1118 TTGCTAGTGTGATT---AAGAAAACTAGTTTCTTCAAGGCGAACTGTTCCCTTGTCATTA 1174
|||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 987 TTGCTAATGTGATTCGGAAGAAGACTAGTTTTTTCAAGGCGAACTGTTCCCTTGTCATTA 1046
Query 1175 TTGACTTCTTGTTTCGGCACGGGTTTATCAGACCAGAATCATCGGGTTACTTGGATCTAT 1234
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1047 TTGACTTCTTGTTTCGGCACGGGTTCATCAGACCAGAATCATCGGGTTACTTGCATCTAT 1106
Query 1235 ACCAACGCCTGAGGAATAGAGATTGCTCATAGGGATGTTACTATCTGATG 1284
|| |||||||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 1107 ACGGACGCCTGAGGAATAAAGATTGCTCATAAGGATGCTACTATCTGATG 1156
> Ahg941495 jgi|Araly1|941495|scaffold_602039.1
Length=1139
Score = 1099 bits (595), Expect = 0.0
Identities = 988/1169 (85%), Gaps = 62/1169 (5%)
Strand=Plus/Plus
Query 133 CCATCGAAAATGGCATCTGGGTTTTGCTCAC-TGGCTCTAACTGTCACCACCTCCTTATT 191
|||| | ||||||||||||| ||||| || | | | || ||||| ||| ||||||||
Sbjct 14 CCATAG-AAATGGCATCTGGATTTTGTTCTCTTTG-TCCCACTGT---CACTTCCTTATT 68
Query 192 CTCGTCCCACGCGATTACACGGCGCGTTCTACCCATTCTACGGTGGCGTTCCAGTTCTAT 251
||||||||| ||| ||| || | | |||| || | || | |||| |||||||
Sbjct 69 CTCGTCCCAAGCGCTTATAC--C-CACTCTA--CAGT-GGCGTTCTAGTTCGAGTTCTAG 122
Query 252 GTCCCTTTCTCCGCTGCGTCA-TTCCCGCGCTTTATCAGCTGCAACAACTGTTCCGATAA 310
|| | | ||||| | | | | |||||||| |||||||| || | ||||||||| ||||
Sbjct 123 GT--C-TCCTCCGGTACAT-ATTTCCCGCGTTTTATCAGTTG--A-AACTGTTCCTATAA 175
Query 311 GCTCATCCTTCACGTGGGACGACGTAATCGAGACCGGTCG-GGC-AG-A---G--T-ACA 361
|| |||||||||| ||| |||| || |||||| |||| | | || | | | | |
Sbjct 176 GCCCATCCTTCACCTGGAACGATGTTTTCGAGAATTGTCGAGCCGAGTATGTGCCTCAAA 235
Query 362 ACTCTTCCGATCTCACCGGATTT-TTCGAGAAAATCAACCGCTGCAATCGCGGATCCGAA 420
|||| |||||||||||||||||| || |||||| | ||||||||||||| |||| |||
Sbjct 236 ACTCGTCCGATCTCACCGGATTTCTT-GAGAAAGTTGACCGCTGCAATCGTGGATTAGAA 294
Query 421 AAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCATAAA 480
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 295 AAGTTAGCTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCACAAG 354
Query 481 AGATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAATGGTTCT 540
||||||| ||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 355 GGATTTACAAAGTACTTGAGGGACTTTCATGATATCTTTACATTTTCAC--AA------- 405
Query 541 TGTCCTGACCGTGTTGATGGCTATGTAACGCTTAATC-TGATGCTTCAAAAGCCTGAAGA 599
| | || | |||| ||||||| ||||| | |||||||| |||||||||||||
Sbjct 406 -----T-A---TG--G-TGGCCATGTAACACTTAA-CATGATGCTTAAAAAGCCTGAAGA 452
Query 600 TAGAACCAGAGCAGTTGCAGATGTGATCAAAATATTGGGTGACAAAGGAATCATTCCAGG 659
|||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| || ||
Sbjct 453 AAGAACCAGAGCAGTTGCAAATGTGATCAAAATCTTGGGTAACAGAGGAATCATCCCTGG 512
Query 660 AATACGTAATGAGCTGTATCCTGTGAAACCATCGTTTAATGCCCCGGTCtttttttCTCT 719
|||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct 513 AATACGAAATGAGCTGTATCCTGTGAAGCCATCGTTTAATGCTTCGGCCTTTTTTTCTCT 572
Query 720 AGAGCGTGCTGCTGCTCCTTATTTCGGAATT-AAGGGTTACGGAGTTCACATGAATGGGT 778
||||||||||||||||||||||||||| ||| |||||||||| | |||| |||||||||
Sbjct 573 AGAGCGTGCTGCTGCTCCTTATTTCGG-ATTGAAGGGTTACGCAATTCATGTGAATGGGT 631
Query 779 ATGTAGAAAGAGATGGACAGAAATTACTGTGGATAGGTAAGAGAAGTCTCTCAAAATCCA 838
||||||||||||||||||| ||||| || |||||||||||||||||||| | |||||||
Sbjct 632 ATGTAGAAAGAGATGGACAAAAATTTCTATGGATAGGTAAGAGAAGTCTAGCGAAATCCA 691
Query 839 CGTATCCAGGAATGCTTGATCATCTGGTTGCTGGAGGATTGCCTCACGGGATTAGCTGCG 898
| ||||| ||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 692 CTTATCCTGGATTGCTTGATCATCTGGTTGCTGGAGGATTGCCTCATGGGATTAG-TG-T 749
Query 899 GTG-GA-AATCTAGTAAAGGAATGTGAAGAGGAAGCTGGGATTTCCAGAGCCATT-GCTG 955
|| || ||||| ||||||||||| ||||||||||||||||||||| || | || ||||
Sbjct 750 TTGTGAGAATCTGGTAAAGGAATGCAAAGAGGAAGCTGGGATTTCCAAAGTC-TTGGCTG 808
Query 956 ATAGGGCAATAGCGGTTGGTGCTGTCTCATATTTGGACATCGATCAGTACTGTTTCAAAC 1015
||||||| ||||||||||||||||| ||||| |||| ||||||| ||||||||||| ||
Sbjct 809 ATAGGGCGATAGCGGTTGGTGCTGTTTCATACATGGATATCGATCGGTACTGTTTCACAC 868
Query 1016 GTGATGTGCTGTTTTGTTATGATTTGGAACTCCCTGAAGATTTTGTTCCCAAAAATCAAG 1075
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 869 GTGATGTGCTGTTTTGTTATGATTTGGAGCTCCCTCAAGATTTTGTTCCCAAAAATCAAG 928
Query 1076 ATGGAGAAGTTGAGAGCTTCAAGTTGATTCCAGTAGCCCAAGTTGCTAGTGTGATTAAGA 1135
||||||||||||| |||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 929 ATGGAGAAGTTGACAGCTTCAAGTTGATTCCAGTAGCCCAAGTTGCTAATGTGGTTCGGA 988
Query 1136 AAACTAGTTTCTTCAAGGCGAACTGTTCCCTTGTCATTATTGACTTCTTGTTTCGGCACG 1195
| |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 989 AGACTAGTTTTTTCAAGGATAGTTGTTCCCTTGTCATTATTGACTTCTTGTTTCGGCACG 1048
Query 1196 GGTTTATCAGACCAGAATCATCGGGTTACTTGGATCTATACCAACGCCTGAGGAATAGAG 1255
|||| ||| ||||||| ||| ||||||||||||||||||||| |||||||||||| |||
Sbjct 1049 GGTTCATCCGACCAGAGTCACCGGGTTACTTGGATCTATACCGTCGCCTGAGGAATGGAG 1108
Query 1256 ATTGCTCATAGGGATGTTACTATCTGATG 1284
||||||| || ||||||||||||||||||
Sbjct 1109 ATTGCTCTTAAGGATGTTACTATCTGATG 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61020572490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5