BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19470.1 Length=1271 Score E Sequences producing significant alignments: (Bits) Value Ahg941495 jgi|Araly1|941495|scaffold_602039.1 1672 0.0 Ahg941494 jgi|Araly1|941494|scaffold_602038.1 1086 0.0 > Ahg941495 jgi|Araly1|941495|scaffold_602039.1 Length=1139 Score = 1672 bits (905), Expect = 0.0 Identities = 1043/1112 (94%), Gaps = 0/1112 (0%) Strand=Plus/Plus Query 1 ATGGCATCTGCATTTTGCTCACTTTGTCCCACTCCCACCTCCTTATTCTCTTCCCACGCG 60 |||||||||| |||||| || |||||||||||| ||| ||||||||||| ||||| ||| Sbjct 22 ATGGCATCTGGATTTTGTTCTCTTTGTCCCACTGTCACTTCCTTATTCTCGTCCCAAGCG 81 Query 61 CTTATACCCACTCTACAGTGGCGTTCGAGTTCGAGTTCGAGGTCTCCTCCGCTACATATT 120 |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| Sbjct 82 CTTATACCCACTCTACAGTGGCGTTCTAGTTCGAGTTCTAGGTCTCCTCCGGTACATATT 141 Query 121 TCCCGCGTTTTATCAGTTGAAACTGTTCCTTTAAGCCCATCATTCACCTGGAACGATGTT 180 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 142 TCCCGCGTTTTATCAGTTGAAACTGTTCCTATAAGCCCATCCTTCACCTGGAACGATGTT 201 Query 181 TTTGAGAACAGTCGAAAAGAATACGTGCCTCAGAACTCCTCCGATCTCACCGGATTTCTC 240 || ||||| ||||| || || |||||||| ||||| |||||||||||||||||||| Sbjct 202 TTCGAGAATTGTCGAGCCGAGTATGTGCCTCAAAACTCGTCCGATCTCACCGGATTTCTT 261 Query 241 GAGAAAGTCGACCGCTGTAATCGTGGATTAGAGAAGTTAGGTGAGTTCATTCCATTTGTT 300 |||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||||||| Sbjct 262 GAGAAAGTTGACCGCTGCAATCGTGGATTAGAAAAGTTAGCTGAGTTCATTCCATTTGTT 321 Query 301 ATAGAGGAACAAATCGTTGGTTATATTCACAAGGGATTTACAAAGTACTTGAGGGACTTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 ATAGAGGAACAAATCGTTGGTTATATTCACAAGGGATTTACAAAGTACTTGAGGGACTTT 381 Query 361 AATGATATCTTTACATTTTCACAATATGGTGGCCATGTAACGCTTAACATGATGCTTGAC 420 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 382 CATGATATCTTTACATTTTCACAATATGGTGGCCATGTAACACTTAACATGATGCTTAAA 441 Query 421 AAGCCTGAAGAAAGAACCAGAGCAGTTGCACATGTGATCAAAATATTGGGTAACAAAGGA 480 |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| Sbjct 442 AAGCCTGAAGAAAGAACCAGAGCAGTTGCAAATGTGATCAAAATCTTGGGTAACAGAGGA 501 Query 481 ATCATCCCTGGGATACGAAATGAGCTATATCCTGTGAAGCCATCGTTTAATGCTCCTGCC 540 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct 502 ATCATCCCTGGAATACGAAATGAGCTGTATCCTGTGAAGCCATCGTTTAATGCTTCGGCC 561 Query 541 tttttttCTATAGAGCGTGCTGCTGCTCCTTATTTTGGATTGAAGGGTTACGCAATTCAT 600 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 562 TTTTTTTCTCTAGAGCGTGCTGCTGCTCCTTATTTCGGATTGAAGGGTTACGCAATTCAT 621 Query 601 GTGAATGGGTATGTAGAAAGAGATGGACAAAAATTTCTATGGATAGGTAAAAGAAGTCTA 660 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 622 GTGAATGGGTATGTAGAAAGAGATGGACAAAAATTTCTATGGATAGGTAAGAGAAGTCTA 681 Query 661 GCAAAATCCACTTATCCAGGAAAACTTGATCATCTGGTTGCTGGAGGATTGCCTCACGGG 720 || |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| Sbjct 682 GCGAAATCCACTTATCCTGGATTGCTTGATCATCTGGTTGCTGGAGGATTGCCTCATGGG 741 Query 721 ATTAGCGTTTGTGAGAATCTAGTAAAGGAATGCGAAGAGGAAGCTGGGATTTCCAAAGTC 780 ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 742 ATTAGTGTTTGTGAGAATCTGGTAAAGGAATGCAAAGAGGAAGCTGGGATTTCCAAAGTC 801 Query 781 TTGGCTGATAGGGCGATTGCGGTCGGTGTTGTTTCCTACATGGATATCGATCGGTACTGT 840 ||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||| Sbjct 802 TTGGCTGATAGGGCGATAGCGGTTGGTGCTGTTTCATACATGGATATCGATCGGTACTGT 861 Query 841 TTCACACGTGATGTGCTGTTTTGTTATGATTTGGAACTCCCTCAAGATTTTGTTCCCACA 900 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 862 TTCACACGTGATGTGCTGTTTTGTTATGATTTGGAGCTCCCTCAAGATTTTGTTCCCAAA 921 Query 901 AATCAAGATGGAGAAGTTGACAGCTTCAGGTTGATTCCAGTCGCTCAAGTTGCTAATGTG 960 |||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| Sbjct 922 AATCAAGATGGAGAAGTTGACAGCTTCAAGTTGATTCCAGTAGCCCAAGTTGCTAATGTG 981 Query 961 GTTCGGAAGACTAGtttttttAAGGACAGTTGTTCCCTGGTCATTATTGACTTCTTGTTT 1020 |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct 982 GTTCGGAAGACTAGTTTTTTCAAGGATAGTTGTTCCCTTGTCATTATTGACTTCTTGTTT 1041 Query 1021 CGGCACGGGTTAATCAGACCAGAGTCACCGGGTTACTTGGATCTATACCGACGCCTGAGG 1080 ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1042 CGGCACGGGTTCATCCGACCAGAGTCACCGGGTTACTTGGATCTATACCGTCGCCTGAGG 1101 Query 1081 AATGGAGATTGCTCATAAGGACGTTACTTTCT 1112 |||||||||||||| |||||| |||||| ||| Sbjct 1102 AATGGAGATTGCTCTTAAGGATGTTACTATCT 1133 > Ahg941494 jgi|Araly1|941494|scaffold_602038.1 Length=1162 Score = 1086 bits (588), Expect = 0.0 Identities = 964/1137 (85%), Gaps = 59/1137 (5%) Strand=Plus/Plus Query 13 TTTTGCTCACTTTG-TCCCACTCCCACCTCCTTATTCTCTTCCCACGCGCTTATACCCAC 71 ||||| |||| | | ||| ||| ||||||||||||||| |||||||||| | | Sbjct 38 TTTTGTTCAC-TGGTTCCAACTGTCACCTCCTTATTCTCGTCCCACGCGC-T-T------ 88 Query 72 TCTACAGTGGCGTTCGAGTTCGAGTTCGAGGT-CTCCTCCGCTACATATTTCCCGCG-TT 129 | || ||||||||||||||| | | | | |||||||||| | ||||||||||| || Sbjct 89 GC-ACGGTGGCGTTCGAGTTCTA--T-G-TCTCCTCCTCCGCTGCGTATTTCCCGCGCTT 143 Query 130 TTATCAGTTG-AA--ACTGTTCCTTTAAGC-CCATCATTCACCTGGAACGATGTTTTTGA 185 || |||| || || |||||||| ||||| || || ||||| ||| |||| || | || Sbjct 144 TT-TCAGCTGCAACCACTGTTCCGATAAGCTCC-TCCTTCACTTGGGACGACGTAATCGA 201 Query 186 GAACAGTC--GAAAAGAATACGTGCCTCAGAACTCCTCCGATCTCACCGGATTTCTCGAG 243 || | ||| || || |||| |||||| ||||||||| |||||||||||||||||||| Sbjct 202 GACCGGTCGGGAGGAGTATAC--GCCTCACAACTCCTCCCATCTCACCGGATTTCTCGAG 259 Query 244 AAAGTCGACCGCTGTAATCGTGGATTAGAGAAGTTAGGTGAGTTCATTCCATTTGTTATA 303 |||||||| | ||| || || |||| || ||||||| |||||||||||||||||||||| Sbjct 260 AAAGTCGATCTCTGCAAACGCGGATCCGAAAAGTTAGCTGAGTTCATTCCATTTGTTATA 319 Query 304 GAGGAACAAATCGTTGGTTATATTCACAAGGGATTTACAAAGTACTTGAGGGACTTTAAT 363 |||||||||||||||||||||||||| || |||||||| ||||||||||||| ||| || Sbjct 320 GAGGAACAAATCGTTGGTTATATTCATAAAGGATTTACGGAGTACTTGAGGGAGTTTCAT 379 Query 364 GATATCTTTACATTTT--C---A-----C--A--AT-AT---G--G-TGGCCATGTAACG 402 |||||||||||||||| | | | | || || | | |||| ||||||| Sbjct 380 GATATCTTTACATTTTCACAAAATGGTTCTTACCATGATCGCGTTGATGGCTTTGTAACG 439 Query 403 CTTAA-CATGATGCTTGACAAGCCTGAAGAAAGAACCAGAGCAGTTGCACATGTGATCAA 461 ||||| | |||||||||| ||||||||||| ||||||| |||||||||| |||||||||| Sbjct 440 CTTAATC-TGATGCTTGAAAAGCCTGAAGATAGAACCAAAGCAGTTGCAGATGTGATCAA 498 Query 462 AATATTGGGTAACAAAGGAATCATCCCTGGGATACGAAATGAGCTATATCCTGTGAAGCC 521 | | |||||| ||||||||||||| || | ||||| |||||||| ||||||||||| || Sbjct 499 AGTCTTGGGTGACAAAGGAATCATTCCACGAATACGTAATGAGCTTTATCCTGTGAAACC 558 Query 522 ATCGTTTAATGCTCCTGCCtttttttCTATAGAGCGTGCTGCTGCTCCTTATTTTGGATT 581 |||||||||||| || | | |||||||| | ||||||||||||||||||||||| ||| | Sbjct 559 ATCGTTTAATGCCCCGGTCATTTTTTCTCTTGAGCGTGCTGCTGCTCCTTATTTCGGAAT 618 Query 582 GAAGGGTTACGCAATTCATGTGAATGGGTATGTAGAAAGAGATGGACAAAAATTTCTATG 641 |||||||||| | |||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 619 AAAGGGTTACGGAGTTCACATGAATGGGTATGTAGAAAGAGATGGACAGAAATTTCTATG 678 Query 642 GATAGGTAAAAGAAGTCTAGCAAAATCCACTTATCCAGGAAAACTTGATCATCTGGTTGC 701 ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 679 GATAGGTAAGAGAAGTCTCTCAAAATCCACTTATCCAGGAATGCTTGATCATCTGGTTGC 738 Query 702 TGGAGGATTGCCTCACGGGATTAGCGTTTG-TGAGAATCTAGTAAAGGAATGCGAAGAGG 760 ||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||| Sbjct 739 TGGAGGATTGCCTCACGGGATTAGC-TGCGGTGAGAATCTTGTAAAGGAATGCGAAGAGG 797 Query 761 AAGCTGGGATTTCCAAAGTC-TTGGCTGATAGGGCGATTGCGGTCGGTGTTGTTTCCTAC 819 |||||||||||||||||| | ||| |||||||||| || || || |||| |||||| ||| Sbjct 798 AAGCTGGGATTTCCAAAGCCATTG-CTGATAGGGCAATAGCTGTTGGTGCTGTTTCATAC 856 Query 820 ATGGATATCGATCGGTACTGTTTCACACGTGATGTGCTGTTTTGTTATGATTTGGAACTC 879 ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 857 ATGGATATCGATCAGTACTGTTTCAAACGTGATGTGCTTTTTTGTTATGATTTGGAACTC 916 Query 880 CCTCAAGATTTTGTTCCCACAAATCAAGATGGAGAAGTTGACAGCTTCAGGTTGATTCCA 939 ||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||| Sbjct 917 CCTCAAGATTTTGTTCCCAAAAATCAAGATGGAGAAGTAGAGAGCTTCAAGTTGATTCCA 976 Query 940 GTCGCTCAAGTTGCTAATGTGGTTCGGAAGA---CTAGtttttttAAGGAC-AGTTGTTC 995 || || ||||||||||||||| ||||||||| |||||||||| |||| | | ||||| Sbjct 977 GTAGCCCAAGTTGCTAATGTGATTCGGAAGAAGACTAGTTTTTTCAAGG-CGAACTGTTC 1035 Query 996 CCTGGTCATTATTGACTTCTTGTTTCGGCACGGGTTAATCAGACCAGAGTCACCGGGTTA 1055 ||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| Sbjct 1036 CCTTGTCATTATTGACTTCTTGTTTCGGCACGGGTTCATCAGACCAGAATCATCGGGTTA 1095 Query 1056 CTTGGATCTATACCGACGCCTGAGGAATGGAGATTGCTCATAAGGACGTTACTTTCT 1112 |||| |||||||| |||||||||||||| |||||||||||||||| | |||| ||| Sbjct 1096 CTTGCATCTATACGGACGCCTGAGGAATAAAGATTGCTCATAAGGATGCTACTATCT 1152 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47501154582 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5