BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19500.1 Length=1831 Score E Sequences producing significant alignments: (Bits) Value Ahg941500 jgi|Araly1|941500|scaffold_602044.1 2401 0.0 Ahg488844 jgi|Araly1|488844|fgenesh2_kg.6__1978__AT5G19510.1 399 3e-110 Ahg940697 jgi|Araly1|940697|scaffold_601241.1 126 5e-28 > Ahg941500 jgi|Araly1|941500|scaffold_602044.1 Length=1555 Score = 2401 bits (1300), Expect = 0.0 Identities = 1473/1557 (95%), Gaps = 9/1557 (1%) Strand=Plus/Plus Query 52 TCAGACAAACACAGACATGTCTGTGTCTCTAAGCTACACTTGTCTTCTTAGATTACCCAC 111 ||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 5 TCAGACAAACACAGAGATGTCTGTGTCTCTAAGTTACACTTGTCTTCTTCGATTACCCAC 64 Query 112 CTTTTCAGTTCCAACGAAACCCATTAGTT-TCAATGGACCTCTCCCTTTTTATCTACCAA 170 |||||||||||||||||||||| || || ||| |||||||||||||||| || |||||| Sbjct 65 TTTTTCAGTTCCAACGAAACCCA-TAATTCTCAGTGGACCTCTCCCTTTTCATGTACCAA 123 Query 171 GATCTCATATTTCCTCATCTTGTTTTGGTTTCAAATCAAACCCATTCATAAGAACTCAGA 230 |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| Sbjct 124 GATCTCATATTTCCTCATCTCGTTTTGGTTTCAATTCAAACCCATTCTTAAGAACTCAGA 183 Query 231 CCCCAAGATTCTTCAAGTGTTTGCCTCAGAGAGTGTCTGATGAACGCAGAGAAACACAAG 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 CCCCAAGATTCTTCAAGTGTTTGCCTCAGAGAGTGTCTGATGAACGCAGAGAAACACAAG 243 Query 291 TAACAACagaagaagaagaagaagatgaggaagaaaagaTTGTCGTATTTGAGAGGCTCT 350 ||||||| | ||||||||||| ||||| ||||||||| ||||||| ||||||||||||| Sbjct 244 TAACAAC-G--GAAGAAGAAGATGATGAAGAAGAAAAGGTTGTCGTTTTTGAGAGGCTCT 300 Query 351 TCTCTAACCTGAATCAATCAACATTGAAGCGAGAATCCGGAAGTTTGTCCAGTGCAATTT 410 |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 301 TCTCTAACCTTAATCAATCAACATTGAAGCGAGAGTCCGGAAGTTTGTCCAGCGCAATTT 360 Query 411 TCTTGGTTGCTGGCACTACCGTAGGTGCAGGGATACTTGCGATTCCAGCTGTGACACAAG 470 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCTTGGTCGCTGGCACTACCGTAGGTGCAGGGATACTTGCGATTCCAGCTGTGACACAAG 420 Query 471 AATCAGGTTTTCTAGCCTCTGCAGTCGCCTGCATTCTCTGTTGGGCCTTCATGGTTGTGA 530 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 421 AATCAGGTTTTCTTGCCTCTGCAGTCGCCTGCATTCTCTGTTGGGCTTTCATGGTTGTGA 480 Query 531 CAGGTTTGCTGGTTGCAGAAGTAAATGTCAACACCATGAGTGAACTAGGCTCTGGAGGCG 590 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CAGGTTTGCTGGTTGCTGAAGTAAATGTCAACACCATGAGTGAACTAGGCTCTGGAGGCG 540 Query 591 TATCTCTTGTCTCAATGGCGAAGCGGACTCTTGGGTCTGTTGGAGTTCAAGTTGTTTCTT 650 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 541 TATCTCTCGTCTCAATGGCGGAGCGGACTCTTGGGTCTGTTGGAGTTCAAGTTGTTAGTT 600 Query 651 GGTCTTATCTTCTCATACATTACACCCTTCTTGTGGCTTACATTGCTCGGTCATCAGGCA 710 |||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||| Sbjct 601 GGTCTTATCTTCTCATACATTATACCCTTCTCGTGGCCTACATTGCTCGGTCTTCAGGCA 660 Query 711 TCCTTACCAACTTCCTCGGCATTCCGATATGGGAGAGTGCAACTCTATTCTCACTGATCT 770 ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct 661 TCCTTACAAACTTCCTCGGCATTCCAATATGGGAGAGTGCAACTCTGTTCTCACTAATCT 720 Query 771 TCGGAGGCCTTTGCTTCTTTGGAAGCCAGCGATTCATCGGTGCAGCCAATGGAGTTCTGG 830 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 721 TCGGAGGTCTTTGCTTCTTTGGGAGCCAGCGATTCATCGGTGCAGCCAATGGAGTTCTGG 780 Query 831 TGTTTGGAGTAATTGCATCGTTTGCAGCACTCGTGGCAGTTGCAAGTGGAGACTTACACT 890 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 781 TGTTTGGAGTAATTGCATCGTTTGCAGCACTCGTGGCAGTTGCAAGTGGAGACTTGCACT 840 Query 891 GGGAAGCTCTTCTCAAGGCTAACTTTGAGGCCGTTCCCATGAGTGTACCCATCATTGCTC 950 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | Sbjct 841 GGGAAGCTCTTCTCAAGGCTAACTTTGAGGCCGTTCCCATGAGTATACCTATCATTGCCC 900 Query 951 TGTCATTTGTTTATCAGAATGTGGTGCCGGTTCTCTGCACAGATCTTGAAGGAGACTTGC 1010 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TGTCATTTGTTTATCAGAATGTGGTGCCGGTTCTCTGCACAGATCTTGAAGGAGACTTGC 960 Query 1011 CGAGAGTAAGAACCGCCATCGTTCTTGGCACAGCCATACCACTTGGCTTGTTTCTTGTGT 1070 ||| |||||||||||| || ||||||||||||||||||||||| |||||||||||||||| Sbjct 961 CGAAAGTAAGAACCGCGATTGTTCTTGGCACAGCCATACCACTCGGCTTGTTTCTTGTGT 1020 Query 1071 GGGACGCTGTGATTCTTGGATCGTTTCCAGTAGATACTGGGGTGGCTGTTGAGAAGATGG 1130 || ||| ||| |||||||| |||||||||| ||||||||||||||||| ||||||||||| Sbjct 1021 GGAACGGTGTAATTCTTGGGTCGTTTCCAGCAGATACTGGGGTGGCTGCTGAGAAGATGG 1080 Query 1131 TCGATCCTCTGCAACAATTGAGATCAAGTAGTGTCACTGTCGGTCCGTTTGTGGAAGCAT 1190 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1081 TCGATCCTCTGCAACAATTGAGATCAAGCAGTGTCACTGTCGGTCCTTTTGTGGAAGCAT 1140 Query 1191 TCTCTCTTTTTGCAATCGCAACATCTTATATAGGGTTTGTCTTAGGCCTCTCTGATTTCT 1250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 TCTCTCTTTTTGCAATCGCAACATCTTATATAGGGTTTGTCTTAGGCCTCTCTGATTTCT 1200 Query 1251 TCTCTGACTTATTGAAGCT-CCCGAGTGGCCAGAACAAGCCTCTTCTTTACTTGCTTACT 1309 ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| Sbjct 1201 TCTCTGACTTATTGAAGCTTCCC-AGTGGCCAGAACAAGCCTCTTCTCTACTTGCTTACT 1259 Query 1310 CTCGTTCCACCGCTTGTTCTGTCCCTACTGGATCCAGAGATTTTCTTCAAGGCCTTAGAT 1369 || |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1260 CTTGTTCCACCGCTTGTCCTGTCCCTACTGGACCCAGAGATTTTCTTCAAAGCCTTAGAT 1319 Query 1370 TTTGCCGGGACATATGGAGTTCTGGTATTGTTCGGAATCCTCCCAGCAGCAATGTCTTGG 1429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TTTGCCGGGACATATGGAGTTCTGGTATTGTTCGGAATCCTCCCAGCAGCAATGTCTTGG 1379 Query 1430 TCAGATAGGTACATAGTCTCATCATCAACAGTGACAAGATTACCTCAACTTGTTCCCGGA 1489 ||||||||||||||||||||||| |||||||||||||||| || ||||||||||| ||| Sbjct 1380 TCAGATAGGTACATAGTCTCATCGCCAACAGTGACAAGATTGCCACAACTTGTTCCAGGA 1439 Query 1490 GGAAAACTCACCCTTTCTCTGGTTATGGGAGCTGCAGGATACGTAATTATTTCTGAAGTA 1549 |||||||||||||||||||| || ||||||||| | |||||||| ||| ||||||||||| Sbjct 1440 GGAAAACTCACCCTTTCTCTTGTCATGGGAGCTTCTGGATACGTGATTCTTTCTGAAGTA 1499 Query 1550 ATAGAGAATTTGTCAAAGTATCTAAAT-GTTTCTTAACAATGATGCAACGGAATAGT 1605 |||||||||| |||| ||| |||| | ||| ||||||||| || |||||||||||| Sbjct 1500 GTAGAGAATTTTTCAAGGTACCTAAGTAGTT-CTTAACAATAATTCAACGGAATAGT 1555 > Ahg488844 jgi|Araly1|488844|fgenesh2_kg.6__1978__AT5G19510.1 Length=936 Score = 399 bits (216), Expect = 3e-110 Identities = 265/289 (92%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 1544 GAAGTAATAGAGAATTTGTCAAAGTATCTAAAT-GTTTCTTAACAATGATGCAACGGAAT 1602 |||||| |||| ||||| |||||||| |||| | | ||||||||||| |||||||||||| Sbjct 936 GAAGTAGTAGAAAATTTTTCAAAGTACCTAAGTAG-TTCTTAACAATAATGCAACGGAAT 878 Query 1603 AGTAACCATTGAAAATTTAGTGTTATTGTAACATGAAAGCGGTCTTGCAACTAGGAAAGA 1662 || || |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 877 AGAAAGCATTGATAATTTAGTGTTATTGTAACATGAAAGAGGTCTTGCAACTAGAAAAGA 818 Query 1663 AACATTTCGGTAAACAACACAAACGAAAACAAAACTTGAAATTCAGATATGTTTCGGTAA 1722 ||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||| Sbjct 817 AACATCTCGGTAAACAACACAAACGAAAACAAAACTTGAAAACCAAATATGTTTTTGTAA 758 Query 1723 GGAGAAATTTGAAGTCTCTAAATCTTGTTGAAAGCGACAATGTCACAACTCTGGATGTAC 1782 ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 757 GGAGAGGTTTGAAGTCTCTAAATCTTGTTGAATGCGACAATGTCACAACTCTGGATGTAC 698 Query 1783 TCGTTGTTAGGCTCTGAGGTGAGGAAGTCTTCAATGAGGTTGTCCGGGG 1831 ||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 697 TCGTTGTTAGGCTCTGAGGTGAGAAAGTCTTCAATGAGGTTGTCTGGGG 649 > Ahg940697 jgi|Araly1|940697|scaffold_601241.1 Length=736 Score = 126 bits (68), Expect = 5e-28 Identities = 90/100 (90%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 1730 TTTGAAGTCTCTAAATCTTGTTGAAAGCGACAATGTC-ACAACTCTGGATGTACTCGTTG 1788 |||| ||||||||||||||||| ||||| |||||||| || ||| ||||||||||||||| Sbjct 726 TTTGGAGTCTCTAAATCTTGTTAAAAGCAACAATGTCGAC-ACTTTGGATGTACTCGTTG 668 Query 1789 TTAGGCTCTGAGGTGAGGAAG-TCTTCAATGAGGTTGTCC 1827 ||||||||||||||||| | | ||||||||||| |||||| Sbjct 667 TTAGGCTCTGAGGTGAG-ATGGTCTTCAATGAGATTGTCC 629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68752892225 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5