BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19550.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941505 jgi|Araly1|941505|scaffold_602049.1 2006 0.0
Ahg475071 jgi|Araly1|475071|fgenesh2_kg.2__201__AT1G62800.2 1116 0.0
> Ahg941505 jgi|Araly1|941505|scaffold_602049.1
Length=1259
Score = 2006 bits (1086), Expect = 0.0
Identities = 1192/1243 (96%), Gaps = 7/1243 (1%)
Strand=Plus/Plus
Query 171 TCCCTTGTCTCGTCATGGATTCCGTCTTCTCTAACGTTGCTCGTGCTCCCGAAGATCCTA 230
||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TCCCTTG--TC-TAATGGATTCCGTCTTCTCTAACGTTGCTCGTGCTCCCGAAGATCCTA 66
Query 231 TTCTCGGTGTAACTGTTGCTTACAACAATGATCCTAGTCCTGTTAAGATCAATTTGGGTG 290
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 67 TTCTCGGTGTAACTGTTGCTTACAACAATGATCCTAGTCCCGTTAAGATCAATTTGGGTG 126
Query 291 TCGGTGCCTACCGAACTGAGGAAGGGAAGCCTCTTGTTCTTGATGTGGTGCGTAAGGCAG 350
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 127 TCGGTGCCTACCGAACTGAGGAAGGGAAGCCCCTCGTTCTTGATGTGGTGCGTAAGGCAG 186
Query 351 AGCAACAGCTAGTGAACGATCCGTCTCGGGTCAAGGAATACATTCCCATTGTTGGTATTT 410
|||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGCAACTGCTCGTGAATGATCCGTCTCGGGTCAAGGAATACATTCCCATTGTTGGTATTG 246
Query 411 CCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGTCCTGCGATTACAG 470
| |||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 247 CTGATTTTAACAAGCTAAGCGCCAAGCTCATCTTAGGTGCTGACAGTCCTGCAATCAAAG 306
Query 471 A-AAGTAGAGTTACTA-CAGTCCAGTGCTTGTCTGGTACTGGTTCGTTGAGAGTTGGGGC 528
| || ||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 307 AGAA-TAGAGTTGCTACCA-TCCAGTGCTTGTCTGGTACTGGTTCCTTGAGAGTTGGGGC 364
Query 529 TGAGTTTCTCAAAACACACTACCACCAAAGTGTCATTTACATTCCAAAACCAACTTGGGG 588
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 365 TGAGTTTCTCAAAAAACACTACCACCAAGGTGTCATTTACATTCCAAAACCAACTTGGGG 424
Query 589 GAACCATCCCAAAGTTTTCAACTTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGA 648
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 425 GAACCATCCAAAAGTTTTCAACCTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGA 484
Query 649 TCCTGCAACCCGTGGTCTTGACTTCAAAGGCTTGCTCGAGGATCTTGGCGCTGCACCATC 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TCCTGCAACCCGTGGTCTTGACTTCAAAGGCTTGCTCGAGGATCTTGGCGCTGCACCATC 544
Query 709 TGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAACCTC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 545 TGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAACTTC 604
Query 769 TGAACAGTGGGAACAGATTCGACAGCTGATGAGATCTAAAAGCTTATTACCCTTTTTTGA 828
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 605 TGAACAGTGGGAACAGATTCGACAGCTAATGAGATCTAAAAGCTTATTACCCTTTTTTGA 664
Query 829 TAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACACAGATGCACAATCTGTCCGTAC 888
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 665 TAGTGCATATCAGGGTTTTGCTAGTGGTAGTCTTGACACAGATGCACAGTCTGTCCGTAC 724
Query 889 ATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGCCAAAAATATGGGACT 948
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 725 TTTTGTTGCTGATGGTGGTGAATGCTTGATAGCTCAAAGTTATGCCAAAAATATGGGACT 784
Query 949 TTATGGGGAGCGTGTTGGTGCCCTTAGCATTGTCTGCAAGTCAGCAGATGTGGCTAGTAA 1008
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 785 CTATGGGGAACGTGTTGGTGCCCTTAGCATTGTCTGCAAGTCGGCAGATGTGGCTAGTAA 844
Query 1009 GGTTGAGAGCCAGGTGAAGCTTGTTGTGCGGCCCATGTATTCGAGCCCCCCTATTCATGG 1068
|||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||
Sbjct 845 GGTTGAGAGCCAGGTGAAACTTGTTGTGCGACCCATGTACTCGAGCCCACCTATTCATGG 904
Query 1069 AGCATCAATTGTTGCCACCATTCTAAAAAGCAGTGATATGTACAACAACTGGACCATCGA 1128
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 905 AGCATCAATTGTTGCCACCATTCTGAAAAGCAGTGATATGTACAACAACTGGACCATCGA 964
Query 1129 GCTGAAAGAAATGGCTGACCGTATAAAGAGCATGCGCCAACAGTTATTTGAAGCTATACA 1188
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 965 GTTGAAAGAAATGGCTGACCGCATAAAGAGCATGCGCCAACAGTTATTTGAAGCTATACA 1024
Query 1189 AGCTAGAGGTACACCTGGTGACTGGAGTCATATTATCAAACAGATTGGGATGTTTACATT 1248
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 1025 AGCTAGAGGCACACCTGGTGACTGGAGTCACATTATCAAACAGATCGGGATGTTTACTTT 1084
Query 1249 TACTGGATTGAACAAGGAGCAAGTTGAATTCATGACCAAAGAGTTCCACATTTACATGAC 1308
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1085 TACCGGATTGAACAAGGAGCAAGTTGAATTCATGACCCAAGAGTTTCACATTTACATGAC 1144
Query 1309 CTCTGATGGGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGA 1368
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CTCTGACGGGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGA 1204
Query 1369 TGCTATGCATGCTGCAGTGACCCGCCTCGGCTAAACTAGCGAC 1411
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 TGCTATGCATGCTGCAGTGACCCGCCTCGGCTAAACTAGCGAC 1247
> Ahg475071 jgi|Araly1|475071|fgenesh2_kg.2__201__AT1G62800.2
Length=1402
Score = 1116 bits (604), Expect = 0.0
Identities = 1047/1255 (83%), Gaps = 54/1255 (4%)
Strand=Plus/Plus
Query 183 TCATGGATTCCGTCTTCTCTAA-CGTTGC-TCGTGCTCCCGAAGATCCTATTCTCGGTGT 240
||||| ||||| |||| || || || | | || ||||||| |||||||| ||||| ||||
Sbjct 23 TCATGAATTCCATCTTGTC-AAGCG-TCCTTCCTGCTCCCAAAGATCCTGTTCTCAGTGT 80
Query 241 AACTGTTGCTTACAACA-ATGATCCTAGTCCTGTTAAGATCAATTTGGGTGTC-GGTGCC 298
|| | |||||| | | ||||||||||||| || ||| | |||||| | | | ||| ||
Sbjct 81 AATTTTTGCTT-GTAGAGATGATCCTAGTCCGGTCAAGTTGAATTTGAGCG-CAGGTACC 138
Query 299 TACCGAACTGAGGAAGGGAAGCCTCTTGTTCTTGATGTGGTGCGTAAG-GCAGAGCAACA 357
|| |||||||||||||| |||||||||||||||||||| ||| | ||| |||||||||||
Sbjct 139 TATCGAACTGAGGAAGGAAAGCCTCTTGTTCTTGATGTTGTGAG-AAGAGCAGAGCAACA 197
Query 358 GCTAGTGAACGATCC-GTCTCGGGTCAAGGAATA-CATTCCCATTGTTGGTATTTCC-GA 414
| ||| ||||| || |||| ||| ||||||||| | ||||| || ||| | |||| ||
Sbjct 198 GTTAGCCAACGA-CCTGTCTAGGGACAAGGAATATC-TTCCCCTTAATGG-ACTTCCTGA 254
Query 415 TTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGTCCTGCGA-TTACAGA-A 472
|| || || ||||| ||||||| |||||||||| ||| ||||| || | | | ||| |
Sbjct 255 ATTCAATAAATTAAGTACCAAGCTTATCTTAGGTGATGATAGTCCCGC-AGTGAAAGAGA 313
Query 473 AGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTACTGGTTCGTTGAGAGTTGGGGCTGAG 532
| ||||||| |||| ||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 314 A-TAGAGTTGTTACAATCCAGTGTTTGTCTGGTACTGGTTCTTTGAGAGTTGGAGCTGAG 372
Query 533 TTTCTCA-AAACACACTACCACCAAAGTGTCATTTACATTCCAAAACCAACTTGGGGGAA 591
||||| | ||||||| || | || ||||||||| | ||||| | ||||||||||||||
Sbjct 373 TTTCT-AGCAACACACAACAAAGAACGTGTCATTTTCGTTCCAGACCCAACTTGGGGGAA 431
Query 592 CCAT-CCCAAAGTTTTCAAC-TTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGAT 649
|||| ||| | |||| | ||||| || |||||||| |||||||||||||||||||||
Sbjct 432 CCATCCCCGTA-TTTT-TGCTTTGGCGGGTTTGTCTGTCGAGTATTTCCGCTACTATGAT 489
Query 650 CCTGCA-ACCCGTGGTCTTGACTTCAAAGGCTTGCTCGAGGATCTTGGCGCTGCACCAT- 707
|| | | | ||| || ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 490 CC-GAAGAGCCGAGGACTTGACTTCAAAGGCATGCTCGAGGATCTTGGCGCTGCACC-TC 547
Query 708 CTGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAAC-C 766
|||||||||| || ||||||| || |||| || || ||||||||||||||||||||
Sbjct 548 CTGGAGCTATAGTGGTACTTCAAGCTTGTGGGCATAACCCCACTGGAGTTGACCCAACAT 607
Query 767 TCTGAACAGTGGGAACAGATTCGACAG-CTGA-TGAGATCTAAAAGCTTATTACCCTTTT 824
|| ||||| |||||||||||||||| | || | ||||||| ||| ||||||||||||| |
Sbjct 608 TC-GAACAATGGGAACAGATTCGAC-GACT-AGTGAGATCGAAAGGCTTATTACCCTTCT 664
Query 825 TTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACACAGATGCACAATCTGTCC 884
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |
Sbjct 665 TTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACTCAGATGCACAAGCGGTTC 724
Query 885 GTACATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGCCAAAAATATGG 944
||| |||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 725 GTATGTTTGTTGCCGATGGAGGTGAATGTTTGATAGCTCAAAGTTATGCCAAAAATATGG 784
Query 945 GACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATTGTCTGCA-AGTCAGCAGATGTGGCT 1003
| || |||||||||||| |||| || |||| |||||| |||| | |||| |||||| |||
Sbjct 785 GTCTCTATGGGGAGCGTATTGGCGCTCTTACCATTGTATGCACA-TCAGAAGATGTCGCT 843
Query 1004 A-GTAAGGTTGAG-AGCCAGGTGA-AGCTTGTTGTGCGGCCCATGTAT-TCGAGCCCC-C 1058
| | ||| ||||| | ||| ||| | ||||||||| |||| |||||| | | |||| |
Sbjct 844 AAGAAAG-TTGAGGA-CCAAGTGCTA-CTTGTTGTGAGGCCTATGTATCTT-A-CCCCAC 898
Query 1059 CTATTCATGGAGCATCAATTGTTGCCACCATTCTAAAAAGCAGTGATATGTACAACAACT 1118
|||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 899 CTATTCATGGTGCATCAATTGTTGCCACAATTCTAAAAAACAGTGATATGTACAATGACT 958
Query 1119 GGACCATCGAGCTGAAAGAAATGGCTGACCGTATAAAGAGCATGCGCCAACAGTTATTTG 1178
|||| || |||||||||| |||||||||||| |||| |||||||| |||||||||| ||
Sbjct 959 GGACAATTGAGCTGAAAGGAATGGCTGACCGCATAATTAGCATGCGTCAACAGTTATATG 1018
Query 1179 AAGCTATACAAGCTAGAGGTACACCTGGTGACTGGAGTCATATTATCAAACAGATTGGGA 1238
||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||||
Sbjct 1019 AAGCTATACAAGCTAGAGGAACACCTGGTGATTGGAGTCACATTATTAAACATATTGGGA 1078
Query 1239 TGTTTACATTTACTGGATTGAACA-AGGAGCAAGTTGAATTCAT-GACCAAAGAGT-TCC 1295
||||||| ||||||||||| || |||| |||||| | || || | ||||||| | ||
Sbjct 1079 TGTTTACTTTTACTGGATT-AAGTGAGGAACAAGTTCACTTGATTG-CCAAAGAATATC- 1135
Query 1296 ACATTTACATGACCTCTGATGGGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGC 1355
||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1136 ACATTTACATGACTTATGATGGGAGGATAAGCATGGCAAGTCTAAGTTCGAAGACAGTGC 1195
Query 1356 CTCACCTTGCCGATGCTATGCATGCTGCAGTGACCCGCCTCGGCTAAACTAGCGA 1410
|||| || || |||||||| ||||||| || || ||| ||| ||||| | ||||
Sbjct 1196 CTCAACTCGCTGATGCTATACATGCTGTTGTTACTCGCATCGCCTAAATTTGCGA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5