BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19580.1
Length=2118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488852 jgi|Araly1|488852|fgenesh2_kg.6__1986__AT5G19580.1 3424 0.0
> Ahg488852 jgi|Araly1|488852|fgenesh2_kg.6__1986__AT5G19580.1
Length=2124
Score = 3424 bits (1854), Expect = 0.0
Identities = 2041/2130 (96%), Gaps = 18/2130 (1%)
Strand=Plus/Plus
Query 1 TCAGGCATCACAACAAT-CAATATAAGCCTGGGATCCAATTTTCTTATTTCCCCAACCAA 59
|||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAGGCATCATAACAATCCAA-ATAAGCCTGGGATCCAATTTTCTTATTTCCCCAACCAA 59
Query 60 AACAGGGGAAGaaaaaaaaagaaaacaaaaaaatcaaaaaaaa-TTAGAAAATGAAAGCC 118
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 60 AACAGGGGAAGAAAAAAAAAG-AAACAAAAAAATCAAAAAAAATTTAGAAAATGAGAGCC 118
Query 119 TCAACAAGAGTCATATGGACAATATCTGTCCTTATGCTCGCTGCTGTGTCCGAGGCCATC 178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCAACAAGAGTCATATGGACAGTATCTGTCCTTATGCTCGCTGCTGTGTCCGAGGCCATC 178
Query 179 TTCCCTCTACCGTTTCTACCGTTCCTCCCTGGGTTCAACAACGGCTTTAGGGACAATGAG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCCCTCTACCGTTTCTACCGTTCCTCCCTGGGTTCAACAACGGCTTTAGGGACAATGAG 238
Query 239 GCTGTCAAGGTTGCGAAACCACAGCCTGCA---GGAGC---AGTTGGTGGAAAAGCCGCA 292
||||| |||||||||||||||||||||||| || || || ||||||||||| || |
Sbjct 239 GCTGTGAAGGTTGCGAAACCACAGCCTGCAGCCGGTGCGGTAGCTGGTGGAAAAGGCGGA 298
Query 293 AGAAGGCAGCGTGGCGGCGGTTTAGACGCTCAGACAACCTGGGGTGGTAAGTGGGAGCTC 352
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 AGAAGGCAGCGAGGCGGCGGTTTAGACGCTCAGACAAACTGGGGTGGTAAGTGGGAGCTC 358
Query 353 TTCTTGGAAAACTCGGGTGTGTCAGGGATGCATGCGATCCTTATGCCAGTTATCAACAAG 412
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 359 TTCTTGGAAAACTCGGGTGTGTCAGGGATGCATGCGATTCTTATGCCAGTCATCAACAAG 418
Query 413 GTCCAGTACTATGACGCCACCATTTGGAGAATTTCAAAGATTAAGTTGCCTCCAGGCGTA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTCCAGTACTATGACGCCACCATTTGGAGAATTTCAAAGATTAAGTTGCCTCCAGGCGTA 478
Query 473 CCATGCCATGTCGTGGACGCTAAGACTAACAAGGTCGATTGTTGGGCTCATTCGATTCTC 532
||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 479 CCATGCCATGTCGTGAACGCCAAGACTAACAAGATCGATTGTTGGGCTCATTCGATTCTC 538
Query 533 ATGGATGTCAACACCGGCGCCCTTAAGCCTCTAGGGCTTTCCACCGATACATGGTGCTCA 592
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 539 ATGGATGTCAACACCGGCGCTCTTAAGCCTCTAGGCCTTTCCACCGATACATGGTGCTCA 598
Query 593 TCCGGAGGTCTGACCGTAAATGGTACATTGGTGAGCACTGGAGGATACGGAGGAGGAGCC 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCCGGAGGTCTGACCGTAAATGGTACATTGGTGAGCACTGGAGGATACGGAGGAGGAGCC 658
Query 653 AACACCGCGAGGTACCTATCCAGCTGTGAAAACTGCAAGTGGGAAGAATACCCTCAGGCA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AACACCGCGAGGTACCTATCCAGCTGTGAAAACTGCAAGTGGGAAGAATACCCTCAGGCA 718
Query 713 TTGGCCGCGAAGAGATGGTACTCAACGCAAGCAACTCTCCCTGACGGAAAGTTCTTCGTG 772
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 719 TTGGCTGCCAAGAGATGGTACTCAACGCAAGCCACTCTCCCTGACGGAAAGTTCTTCGTG 778
Query 773 ATTGGTGGAAGAGACGCCTTGAACTACGAATACATTCCTGAGGAGGGACAAAACAACAGG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTGGTGGAAGAGACGCCTTGAACTACGAATACATTCCTGAGGAGGGACAAAACAACAGG 838
Query 833 AAGCTCTTTGACTCATTGCTCCTCAGGCAAACAGACGACCCGGAAGAAAACAACCTTTAC 892
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 AAGCTCTATGACTCATTGCTCCTCAGGCAAACAGATGACCCGGAAGAAAACAACCTTTAC 898
Query 893 CCTTTCGTCTGGCTTAACACCGACGGTAACCTCTTCATTTTCGCTAACAACCGATCCATC 952
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCTTTCGTGTGGCTCAACACCGACGGTAACCTCTTCATTTTCGCTAACAACCGATCCATC 958
Query 953 CTTCTAAGCCCCAAAACAAACCAAGTCATCAAGGAGTTCCCTCAGCTCCCAGGTGGTGCC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTTCTAAGCCCCAAAACAAACCAAGTCATCAAGGAGTTCCCTCAGCTCCCAGGTGGTGCC 1018
Query 1013 CGTAACTACCCGGGATCAGGTTCTTCCGCACTCCTCCCCATCCAACTTTACGTGAAAAAC 1072
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1019 CGTAACTACCCGGGATCAGGTTCTTCTGCTCTCCTCCCCATCCAACTTTACGTGAAAAAC 1078
Query 1073 CCCAAGGTCATCCCAGCCGAGGTTCTCGTCTGTGGTGGTTCCAAACAAGACGCGTATTAC 1132
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1079 CCCAAGGTCATCCCTGCCGAGGTCCTCGTCTGTGGTGGTTCCAAACAAGACGCGTATTAC 1138
Query 1133 AAGGCTGGTaaaaaaaTATACGAACCAGCACTACAAGACTGCGCCAGGATAAGGATCAAC 1192
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGGCTGGTAAAAGGGTATTCGAACCAGCACTACAAGACTGCGCCAGGATAAGGATCAAC 1198
Query 1193 AGCGCAAAGCCACGATGGAAGACGGAGATGATGCCAACCCCACGAATCATGAGTGATACT 1252
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1199 AGCGCAAAGCCACGATGGAAGACGGAGATGATGCCGACCCCACGAATCATGAGTGACACT 1258
Query 1253 GTCATCCTCCCTAACGGAGACATCCTTCTAGTCAACGGAGCTAAACGTGGTTGTTCAGGC 1312
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTCATCCTCCCCAACGGAGACATACTTCTAGTCAACGGAGCTAAACGTGGTTGTTCAGGC 1318
Query 1313 TGGGGATATGGTAAAGACCCTGCCTTTGCTCCCCTCTTGTACAAGCCCCATGCTGC-ACG 1371
||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 1319 TGGGGCTATGGTAAAGACCCTGCCTTTGCTCCCCTTTTGTACAAGCCCCATGCT-CTACG 1377
Query 1372 TGGCAAGCGTTTCAGACAGCTCAAGCCCACCACCATCCCACGTATGTACCACTCCAGCGC 1431
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1378 TGGCAAGCGTTTCAGAGAGCTCAAGCCCTCCACCATCCCACGTATGTACCACTCCACCGC 1437
Query 1432 CATCATTCTTCCAGACGGTAAGGTTCTTGTCGGTGGCAGCAACACCAACGACGGTTACAA 1491
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CATCATTCTCCCTGACGGTAAGGTTCTTGTCGGTGGCAGCAACACCAACGACGGTTACAA 1497
Query 1492 GTACAACGTTGAGTTCCCAACGGAGCTTCGCGTTGAGAAATTCTCCCCACCTTACCTCGA 1551
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1498 GTACAACGTTGAGTTCCCTACGGAGCTTCGTGTTGAGAAATTCTCCCCACCTTACCTCGA 1557
Query 1552 CCCGGCTCTAGCCAACATAAGGCCAAAGATCGTCACCACCGGCACCCCAAAACAGGTCAA 1611
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1558 CCCGGCTCTAGCCAACATTAGGCCAAAGATCGTAACCACCGGCACCCCAAAACAGATCAA 1617
Query 1612 ATACGGACAATTCTTCAACGTGAAGGTCGACCTTAAAGAAAAGGGAGCAACCAAGG-GAA 1670
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 1618 ATACGGACAATTCTTCAACGTGAAGGTCGACCTTAAACAAAAGGGAGCCACCAAGCAGAA 1677
Query 1671 ATCTCAAGGTTACCATGTTAGCCCCTGCCTTCACAACACACAGTATCTCAATGAACATGA 1730
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 -TCTCAAGGTGACCATGTTAGCCCCTGCCTTCACAACACACAGTATCTCAATGAACATGA 1736
Query 1731 GGATGCTCATCTTGGGTGTCAATAATGTCAAACCTGCTGGTGCCGGTTACGATATCCAGG 1790
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1737 GGATGCTCATCTTGGGTGTCGCTAATGTCAAACCTGCTGGTGCCGGTTATGATATCCAGG 1796
Query 1791 CCGTTGCACCACCAAATGGAAACATCGCTCCACCGGGTTACTATCTTATCTTTGCCATCT 1850
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1797 CCGTCGCACCACCAAATGGAAACATTGCTCCACCGGGTTACTATCTTATCTTTGCCATCC 1856
Query 1851 ACAAAGGTGTTCCCAGCACTGGAGAATGGATTCAGGTCGTCTAATGACGATAATTTTTAC 1910
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 1857 ACAAAGGTGTTCCCAGCACTGGAGAATGGATTCAGATCGTCTAATGATGATGATTTTTAC 1916
Query 1911 CCATTTTGTCTTATGACCGTAACATCTTAATATAAAACAATCACATAATATCAGtttttt 1970
||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1917 CCATTTTGTCTTATGGCCGTAACATCTTAATATAAAAAAATCACGTAATATCAGTTTTTT 1976
Query 1971 tttCCTTCTATATATATTGTTTATGCCACCATTAATGGATCCAAATTACTTGTGTTTTCT 2030
||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1977 TTTCCTTCTATATAT-TTGTATATGCCACCATTAATGGATCCAAATTCCTTGTGTTTTCT 2035
Query 2031 TTCACTTCTATAAACTTT-TCCGTTCATGTAAA-CCTTTTCGGTGAGTTTTTATGACTAA 2088
|| | |||| |||||||| |||||||||||||| |||| ||||||||||||||| ||||
Sbjct 2036 TTAA-TTCTTTAAACTTTATCCGTTCATGTAAAACCTTATCGGTGAGTTTTTATTCCTAA 2094
Query 2089 ATTTTGTATTGGAGAAATTCTTTTATTATT 2118
||||||||||||||||||||||||||||||
Sbjct 2095 ATTTTGTATTGGAGAAATTCTTTTATTATT 2124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79684792540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5