BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19590.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488853 jgi|Araly1|488853|fgenesh2_kg.6__1987__AT5G19590.1 920 0.0
> Ahg488853 jgi|Araly1|488853|fgenesh2_kg.6__1987__AT5G19590.1
Length=712
Score = 920 bits (498), Expect = 0.0
Identities = 637/701 (91%), Gaps = 22/701 (3%)
Strand=Plus/Plus
Query 1 GTGGTTCGAAGCTTTTC-TCCTTCACaaaaaaaaaaTGAAGATTTCTCTCTTCCTCCTCT 59
|||| |||||||||||| | | || | | |||||||||||||||||||||||| ||||
Sbjct 1 GTGGCTCGAAGCTTTTCTTTC-TC-CTTCACAAAAATGAAGATTTCTCTCTTCCTTCTCT 58
Query 60 CTATCCTCATTCTCTTACCCATCTCCCTACAAGATCCTACTCCTGAAGTCAAGAAACCAA 119
|| | ||||||||||||||| | |||||||| ||||| | |||||||||||||||||| |
Sbjct 59 CTGTACTCATTCTCTTACCCGTTTCCCTACAGGATCCGAGTCCTGAAGTCAAGAAACCGA 118
Query 120 CTCGTGCACACGCAGAGCTCACGAATCATGGATTCCCAATTGGACTCCTACCTTTATCTG 179
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 119 CTCGTGCACACGCAGAGCTCACGAATCATGGGTTCCCAATTGGACTCCTCCCTTTATCCG 178
Query 180 TCAAAGATTACTTCCTCAACCAAACCTCCGGCGACTTCTCTCTTTTCCTCAACGGAGCAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 179 TCAAAGATTACTTCCTCAACCAAACCTCCGGCGACTTCTCTCTTTTCCTCAACGGCGCAT 238
Query 240 GCAAAATCACGCTTCCACCTGATAACTACATCGCTACTTATTCTAACAAAGTAACGGGTC 299
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 239 GCAAAATCACGCTTCCTCCTGATAACTACATCGCTACTTATTCGAACAAAGTAACGGGGC 298
Query 300 GGATCTCTCAGGGTAAGATCGCGGAGCTCCAAGGGATTCGGGTTCGGGCGTTTTTCAAGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGATCTCTCAGGGTAAGATCGCGGAGCTCCAAGGGATTCGGGTTCGGGCGTTTTTCAAGT 358
Query 360 CGTGGTCTATTACTGGGATTCGATCTTCTGGAGATAATCTTGTCTTTGAGGTTGCTGGGA 419
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 CGTGGTCTATCACTGGGATTCGATCTTCTGGAGATAATCTTGTGTTTGAGGTTGCTGGGA 418
Query 420 TAACTGCTAAATACCCTTCGAAGAATTTCGATGAGAGTCTTGATTGTGAAGGGAAACGAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 TAACTGCTAAATACCCTTCGAAGAATTTCGATGAGAGTCTTGATTGTGAAGGGAATCGAT 478
Query 480 CTTCTTCTTGATTTCAATTTGAATTAAA--GGCA-GATCTGTGAAGGCAGGGATCGACAA 536
| ||||||||||||||||| ||| ||| || | ||| || |||||||| | | | ||
Sbjct 479 CATCTTCTTGATTTCAATT-GAAACAAAAAGGGAAGAT-TGCGAAGGCAGT-AGCAATAA 535
Query 537 GTGAAGAATGGTTTGTAATATATTGTATCTCCATTAGAT-AAATCAAAGCTTGTAATGTA 595
||||| |||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||
Sbjct 536 GTGAAAAATGGTTTGTAATATATT-TATCTCCATCCGATCAAA-CAAAGCTTGTAATGTA 593
Query 596 AAACCGCAAT--AACCACGACTGTGTTCTCTGCAAACTAAGGGTTTCAATGTTTCATGGA 653
||| | |||| |||||||||||| ||||||||||||||||||||||| || | |
Sbjct 594 AAATCACAATTGAACCACGACTGTATTCTCTGCAAACTAAGGGTTTCA-TG------G-A 645
Query 654 GGCTTGTAAGTTGTCAATCAAATATGGGTTAAAATGTGATA 694
|||||||||||||||| ||||||||||||| ||||||||||
Sbjct 646 GGCTTGTAAGTTGTCACTCAAATATGGGTTGAAATGTGATA 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5