BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19750.1 Length=1179 Score E Sequences producing significant alignments: (Bits) Value Ahg941526 jgi|Araly1|941526|scaffold_602070.1 1081 0.0 > Ahg941526 jgi|Araly1|941526|scaffold_602070.1 Length=892 Score = 1081 bits (585), Expect = 0.0 Identities = 808/910 (89%), Gaps = 37/910 (4%) Strand=Plus/Plus Query 36 TCAGACCAGACGAAACAACGATGCTTAACTCTATCACTTTAACCCGGAAACCACCACTCC 95 ||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| Sbjct 4 TCAGACCAGACGAAACAACGATGTTTAACCCCATCACTTTAACCCGGAAACCACCACTCC 63 Query 96 CGTTCAACT-CTGTTGGGTTTTCAGGTAATCACTCTTCGTCTTTTGGTCGAAGAACTATA 154 | ||||| | | ||| |||||| ||| | | | || | | | ||| Sbjct 64 CCTTCAA-TGTTCTTGCGTTTTCCGGT-A-GA-----AG------GG-C--A-ATGTAT- 104 Query 155 ACGGAAGGTAGTTCGAGCAAGGCTCTTTCGTTTGGGTACAAAAATGTTGGTTCACTGAAG 214 | ||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 105 A---AAGCTAGTTTGAGCAGGGCTCTTTCGTTTGGGTACAAATATGTTGGTTCACTGAAT 161 Query 215 TGTGGTCGGAGCAA-TTGGCCGGGGCGTTCTGGGACTGCGTTTGGGCATCT-AGTCCGGG 272 | |||||| ||||| ||| || ||| | || || |||| |||||||||||| || |||| Sbjct 162 TTTGGTCGTAGCAATTTGTCC-GGGAGATCCGGAACTGGGTTTGGGCATCTGGGT-CGGG 219 Query 273 TCTCTGCGGTCCCAGGTGGGAA-TTCAggtggctctggcgggttaggtggttcaggcggt 331 ||||| ||||| ||||| |||| ||||||||| || |||||||||||||||||| ||| Sbjct 220 TCTCTTCGGTCTCAGGT-GGAAGTTCAGGTGGTTCAGGCGGGTTAGGTGGTTCA---GGT 275 Query 332 ggtggtggtggttccggc---ggcggtggtggtgATGGAAGCGACGGAAAAGGAAAGAAG 388 |||||||||||||||||| || |||| |||||| || |||| |||||| || |||||| Sbjct 276 GGTGGTGGTGGTTCCGGCGGTGGAGGTGATGGTGAAGGTAGCGGCGGAAACGGGAAGAAG 335 Query 389 TGGTCACTTC-TCTCATGGTACCAGGCTCTTCTCTCAAACTCTCCTGTTTTGACCAAAGC 447 |||||| ||| ||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 336 TGGTCA-TTCGTCTCATGGTACTTGGCTCTTCTCTCAGATTCTCCTGTTTTGACTAAAGC 394 Query 448 TGTGACCGCAGCACTTTTGAACCTCGTTGGAGATTTGATCTGTCAGCTTACTATCAACAA 507 ||||||| |||||||||||| |||| |||||||| |||||||||||||||| ||||| || Sbjct 395 TGTGACCTCAGCACTTTTGACCCTCATTGGAGATGTGATCTGTCAGCTTACAATCAATAA 454 Query 508 GACCTCATCGCTGGACAAGAAGAGGACACTCACCTTTACCTTCTTGGGCTTAGGGCTAGT 567 ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 455 GACCTCATCACTGGACAAGAAGAGGACACTCACGTTTACCTTGTTGGGCTTAGGACTAGT 514 Query 568 CGGTCCAACATTGCATTTCTGGTATTTGTATTTGAGCAAAGTGGTGACAGCTTCTGGATT 627 ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 515 CGGACCAGCATTGCATTTCTGGTATCTGTATTTGAGCAAAGTGGTGACAGCTTCCGGATT 574 Query 628 ATCAGGCGCAGTTATACGACTTCTACTGGATCAGTTTGTTTTTGCTCCTATTTTTGTTGG 687 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 575 ATCAGGCGCAGTTATACGACTTTTACTGGATCAGTTTGTTTTTGCTCCTATTTTTGTTGG 634 Query 688 AGTTTTCTTATCAGCAGTTGTGACACTTGAAGGAAAACCATCAAATGTCATACCGAAGCT 747 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 635 AGTTTTCTTATCAGCAGTTGTGACACTTGAAGGAAAACCATCAAATGCCATACCGAAGCT 694 Query 748 ACAACAGGAGTGGACTGGTGCAATGATAGCAAATTGGCAGCTATGGATACCATTTCAGTT 807 |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| Sbjct 695 ACAACAGGAGTGGACTGGTGCAGTGCTAGCAAATTGGCAACTATGGATACCATTTCAGTT 754 Query 808 TCTTAACTTCAGATTTGTTCCACAGAACTACCAGGTACTTGCTTCAAACGTAGTGGCTTT 867 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 755 TCTTAACTTCAGATTTGTTCCACAGAACTTCCAGGTACTTGCTTCAAACGTAGTGGCTTT 814 Query 868 GGCTTGGAATGTGATTTTATCATTCAAAGCTCACAAAGAAGTTGTTGCAAAGTAGACATG 927 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| Sbjct 815 GGCTTGGAATGTGATTTTATCATTCAAAGCTCACAAAGAGGTTGTCGCAAAGTAGGCATG 874 Query 928 TTTCTTACCT 937 |||||||||| Sbjct 875 TTTCTTACCT 884 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43993846218 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5