BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19760.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488869 jgi|Araly1|488869|fgenesh2_kg.6__2003__AT5G19760.1 1812 0.0
> Ahg488869 jgi|Araly1|488869|fgenesh2_kg.6__2003__AT5G19760.1
Length=1191
Score = 1812 bits (981), Expect = 0.0
Identities = 1144/1217 (94%), Gaps = 34/1217 (3%)
Strand=Plus/Plus
Query 42 TTCATCGtctcctct---ccaccaagtgaatctctttctctctctctttttctccgcgga 98
||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||
Sbjct 1 TTCATCGTCTCCTCTCCACCACCAAGTGAATCTC-TT-TCTCTCTCTTTTTCTCCGCGGA 58
Query 99 aggaatctcttc-ttctGGTTGCGTTTGAGTCCGTACGAAAACAAAAGAAAAGAGAGAGA 157
|||||||||||| ||||||||||||||||||||||||||||| | || ||| ||||||||
Sbjct 59 AGGAATCTCTTCTTTCTGGTTGCGTTTGAGTCCGTACGAAAA-ACAA-AAAGGAGAGAGA 116
Query 158 TGGCGGAAGAGAAGAAAGCTCCAATCAGTGTCTGGACTACCGTGAAGCCCTTCGTCAATG 217
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 117 TGTCGGAAGAGAAGAAAGCTCCAATTAGTGTCTGGACTACCGTGAAGCCCTTCGTCAATG 176
Query 218 GCGGTGCCTCTGGTATGCTCGCTACTTGCGTTATCCAGCCGATCGACATGATTAAGGTGA 277
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 177 GCGGAGCCTCTGGTATGCTCGCTACTTGCGTTATCCAGCCGATCGACATGATCAAGGTGA 236
Query 278 GGATTCAACTTGGTCAGGGATCTGCAGCCAGTATAACCACCAACATGCTTAAGAATGAGG 337
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 237 GGATTCAACTAGGTCAGGGATCTGCAGCTAGTATAACCACGAACATGCTTAAGAATGAGG 296
Query 338 GCGTT-GGTGCCTTCTACAAGGGATTATCTGCTGGGTTGCTGAGGCAAGCAACTTACACG 396
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 G-TTTCGGTGCCTTCTACAAGGGATTATCTGCTGGTTTGCTGAGGCAAGCAACTTACACC 355
Query 397 ACAGCCCGTCTTGGATCATTCAAGTTGCTGACTGCAAAGGCAATTGAGTCTAATGATGGA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 356 ACAGCCCGTCTTGGATCATTCAAGTTGCTGACTGCAAAGGCAATTGAGTCTAACGATGGA 415
Query 457 AAGCCTCTACCGCTGTATCAGAAGGCACTATGTGGTCTGACAGCTGGTGCTATTGGTGCT 516
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 416 AAGCCTCTACCGCTGTATCAGAAGGCTCTATGTGGTCTGACAGCTGGTGCTATTGGTGCT 475
Query 517 TGCGTCGGTAGTCCAGCCGATCTAGCACTTATCAGAATGCAGGCCGATAATACTTTGCCG 576
|| || ||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 476 TGTGTTGGTAGTCCAGCCGATCTTGCACTTATCAGAATGCAAGCTGATAATACTTTGCCG 535
Query 577 CTAGCTCAGCGCAGGAATTATACCAATGCTTTCCATGCGC-TTACCCGTATTAGCGCTGA 635
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 536 TTAGCTCAGCGCAGGAATTATACCAATGCCTTCCATGCGCTTTA-CCGTATTAGCGCTGA 594
Query 636 TGAGGGAGTTTTAGCACTTTGGAAAGGGTGTGGGCCCACTGTGGTCAGAGCTATGGCTTT 695
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 595 TGAAGGAGTTTTAGCACTTTGGAAAGGATGTGGGCCCACTGTGGTCAGAGCTATGGCTTT 654
Query 696 GAACATGGGAATGCTTGCATCTTATGATCAAAGTGCTGAATACATGAGAGATAATCTTGG 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAACATGGGAATGCTTGCATCTTATGATCAAAGTGCTGAATACATGAGAGATAATCTTGG 714
Query 756 TTTCGGGGAGATGTCTACGGTCGTAGGAGCAAGTGCTGTTTCTGGGTTCTGCGCTGCGGC 815
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 715 TCTCGGGGAGATGTCTACGGTCGTAGGGGCAAGTGCTGTTTCGGGGTTCTGCGCTGCGGC 774
Query 816 TTGCAGTCTGCCATTTGACTTTGTCAAAACTCAGATTCAGAAAATGCAACCGGATGCTCA 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTGCAGTCTGCCATTTGACTTTGTCAAAACTCAGATTCAGAAAATGCAACCGGATGCTCA 834
Query 876 AGGAAAGTATCCATACACAGGTTCGCTCGATTGTGCGATGAAAACCTTAAAAGAAGGAGG 935
||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 835 GGGAAAATATCCATACACAGGTTCACTTGATTGTGCGATGAAAACCTTAAAAGAAGGGGG 894
Query 936 ACCTCTGAAATTTTACTCGGGTTTCCCAGTTTACTGTGTCAGGATTGCCCCTCACGTCAT 995
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 895 ACCTCTGAAATTTTACTCAGGTTTCCCTGTTTACTGTGTCAGGATTGCCCCTCACGTCAT 954
Query 996 GATGACATGGATCTTCCTAAACCAGATTACGAAATTTCAAAAGAAGATTGGTATGTGAGG 1055
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 955 GATGACATGGATCTTCCTGAACCAGATTACGAAACTTCAAAAGAAGATTGGTATGTGA-- 1012
Query 1056 AACAAATACAGCAGCaaaaaaaTAAGATGAGAAGAACGAAAACACAATTGGAATTGTGTT 1115
|| || || || | | || || | |||||||||||||||||||||||||||
Sbjct 1013 AA-AA-TA-AG-A---------T--GA-GA-A-GAACGAAAACACAATTGGAATTGTGTT 1054
Query 1116 CATTTGCTTTTTAATCATATACATAACCTGCCTTAAAAGCATATTATTGTAGCTGTTTGA 1175
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1055 CATTTGCTTTTTAATCATATACATAACCTGCCTTAAAAGCGTATTATTGTAGCTGTTTGA 1114
Query 1176 A-CTTTAATTTTTTGTTTCGGTCGGTGATTGGTCCGGTGAATTTTAAA-TTTTCTTCTTT 1233
| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1115 AACTTTGATTTTTTGTTTCGGTCGGTGATTGGTCCGGTGAATTATAAAATTTTCTTCTTT 1174
Query 1234 GGTGGAAGTTTAAGACA 1250
|||||||||| ||||||
Sbjct 1175 GGTGGAAGTTGAAGACA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5