BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19850.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488879 jgi|Araly1|488879|fgenesh2_kg.6__2013__AT5G19850.1 2063 0.0
> Ahg488879 jgi|Araly1|488879|fgenesh2_kg.6__2013__AT5G19850.1
Length=1323
Score = 2063 bits (1117), Expect = 0.0
Identities = 1261/1330 (95%), Gaps = 12/1330 (1%)
Strand=Plus/Plus
Query 5 AAAATTCATGGCGAAGACTAGCATTTTTGCAGCTCTACCCTTTACCAACTTCGAATTCCC 64
|||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 1 AAAATTCATGGCGAAGACTAGCATTTTTGCTGCTCTACCCCTTACCAATTTCGAATTCCC 60
Query 65 GTCGCTGTTCCGTGTCAAGAACTCTTCGATTATCAGTTTCAGCGAAACCCATTTTCTCCG 124
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 61 GTCGCTGTTCCGTGTCAAGAACTCTTCGATTATCAGTTTCACCGAAACCCATTTACTCCG 120
Query 125 ACAATCAATTTCGACCGCAATCGTAAGATCTCCGACT-AAGAGGGGAATTGTGTCCGTCT 183
|||||| |||||||||| |||||||||||| ||||| | |||||||||| ||||||||
Sbjct 121 ACAATCGATTTCGACCGGTATCGTAAGATCTTCGACTCCA-AGGGGAATTGGGTCCGTCT 179
Query 184 CATGTTCTTCCGTCACGGACGAAGCTTCTTCTGAAGAGCTACAAGTTCGAACCTTGACAT 243
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CATGTTCTTCGGTCACGGACGAAGCTTCTTCTGAAGAGCTACAAGTTCGTACCTTGACAT 239
Query 244 GGAAGTGGAAAGGTTATTCGATAAGATATCAATGTGCTGGAACCAGTGGCCCTGCTTTGG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 GGAAGTGGAAAGGTTATTCGATAAGATATCAATGTGCTGGAACCAGTGGCCCTGCCTTGG 299
Query 304 TCTTGGTTCATGGTTTCGGTGCTAACAGTGACCATTGGAGGAAGAACACACCTATTCTTG 363
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 300 TCTTAGTTCATGGTTTCGGTGCTAACAGTGATCACTGGAGGAAGAACACACCTATTCTTG 359
Query 364 GGAAAACACATAGGGTGTACTCAATCGATCTTATCGGATATGGATACTCCGATAAACCGA 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGAAAACACATAGGGTTTACTCAATCGATCTTATCGGATATGGATACTCCGATAAACCGA 419
Query 424 ATCCTCGTGAGTTTGGTGGAGAACCATTCTACACTTTTGAGACATGGGGTGAGCAACTCA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATCCTCGTGAGTTTGGTGGAGAACCATTCTACACTTTTGAGACATGGGGTGAGCAACTCA 479
Query 484 ATGATTTCTGTCTGGATGTGGTCAAAGATGAAGCTTTCTTTATTTGCAACTCTATAGGAG 543
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 480 ATGATTTCTGTCTGGATGTGGTCAAAGATGAAGCCTTCTTTATATGCAACTCTATTGGAG 539
Query 544 GACTTGTTGGTCTTCAGGCAGCAGTAAGTAAGCCAGAGATATGCAGAGGGCTTATGCTTA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GACTTGTTGGTCTTCAGGCAGCAGTAAGTAAGCCAGAGATATGCAGAGGGCTTATGCTTA 599
Query 604 TTAACATATCCCTCCGGATGCTTCATATCAAGAAACAACCATTCATTGGAAGACCTTTCA 663
| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 TAAACATATCTCTCCGCATGCTTCATATCAAGAAACAACCATTGATTGGAAGACCTTTCA 659
Query 664 TCAAATCATTCCAGAATTTACTTAGGAACACTCCGGTTGGAAAATTATTTTTCAAGAGCA 723
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 660 TCAAATCATTCCAGAATTTACTTAGGAATACTCCGGTTGGAAAATTATTTTTCAAGAGCA 719
Query 724 TTGCTAAACCAGAGACAGTAAAGAGCATTCTTTGCCAGTGTTACCATGATAGCTCGCAAG 783
|||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 720 TTGCTAGACCGGAGACAGTAAAAAGCATTCTCTGCCAGTGTTACCATGATAGCTCGCAAG 779
Query 784 TGACAGATGAACTAGTTGAGGCAATTCTACGTCCAGGGCTTGAGCCTGGTGCAGTTGATG 843
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGACTGATGAACTAGTTGAGGCAATTCTACGTCCAGGGCTTGAGCCTGGTGCAGTTGATG 839
Query 844 TCTTCCTTGAATTTATCTGTTACTCCGGAGGACCACTTCCAGAGGATTTACTCCCACTAG 903
||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 840 TCTTCCTCGAATTCATCTGTTACTCCGGTGGACCGCTTCCAGAGGATTTACTCCCACTAG 899
Query 904 TCAAGTGCCCGGTTCTAATTGCATGGGGAGAGAAAGATCCATGGGAGCCCATCGAGCTTG 963
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 TCAAGTGCCCAGTTCTAATTGCATGGGGAGAGAAAGATCCATGGGAGCCAATCGAGCTTG 959
Query 964 GACGAGCATATAGCAATTTTGACGCGGTTGAAGATTTCGTTGTTCTTCCAGATGCCGGCC 1023
||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 960 GACGAGCGTATAGCAATTTTGACGCGGTTGAAGATTTCATTGTTCTTCCTGATGCCGGCC 1019
Query 1024 ACTGTCCTCAGGACGAGAAGCCGGAGATGGTGAACCCACTTATTGAATCATTCGTTGCGA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACTGTCCTCAGGACGAGAAGCCGGAGATGGTGAACCCACTTATTGAATCATTCGTTGCGA 1079
Query 1084 GACATTGAAAGTCCAATACATCCATCTCCCCAGACATTTGATCTTTCTAG-TTTTTAATA 1142
|||||||||||||||||||||||||| |||||||||||| | || ||||| |||||| ||
Sbjct 1080 GACATTGAAAGTCCAATACATCCATC-CCCCAGACATTTAACCTCTCTAGATTTTTA-TA 1137
Query 1143 TATCTGTACAGAAACAG-TATA--CCTGCACGAACACTCAGAGTTGTGCATGAACAGTCA 1199
|||||||||||||||| | | |||||||||||||| |||||||||||||||||||
Sbjct 1138 TATCTGTACAGAAACACATCTTGTCCTGCACGAACACT--GAGTTGTGCATGAACAGTCG 1195
Query 1200 CAGGTGAGATTTTTCAGTAGTGACAAAACTGTGATTGTAAGGATACAGATGTTGATAGAG 1259
||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |||
Sbjct 1196 --GGTGAGATTTTTCAGAAGTGACAAAACTGTGATTGTATGGGTACAGATGTTGATGGAG 1253
Query 1260 TAAAGAGGTCGATAAGAGAAACAAACCTTTTTCTTCCAAACTCAATGGAAATACAAGACT 1319
||||||| | | |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1254 TAAAGAGCTTGGTAAGAGAAACAAACCTTTTTATTCCAAACCCAATGGAAATACAAGACT 1313
Query 1320 TTCATGTTTC 1329
|||| |||||
Sbjct 1314 TTCAAGTTTC 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5