BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19940.1 Length=1085 Score E Sequences producing significant alignments: (Bits) Value Ahg941545 jgi|Araly1|941545|scaffold_602089.1 1164 0.0 > Ahg941545 jgi|Araly1|941545|scaffold_602089.1 Length=763 Score = 1164 bits (630), Expect = 0.0 Identities = 721/765 (94%), Gaps = 6/765 (1%) Strand=Plus/Plus Query 49 cttactctctcCAGAGCAACAATGGCTGCGACTGCTTCTTCTCTTACAATCGCGTCGTCA 108 ||| ||||||| ||||||||||||||| || |||||||||| |||||||||||||| || Sbjct 1 CTT-CTCTCTCTAGAGCAACAATGGCTTCGGCTGCTTCTTCCCTTACAATCGCGTCTTCC 59 Query 109 TTCTCCGAACCACGGACTCAGATCCATTCCTCG-AGACGTTTGAATCTCCCTCTTCAATA 167 |||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| Sbjct 60 CTCTCCGAACCACGGACTCAGATCCATTCCTCGAAG-CGTTCGAATCTCCCTCTTCAATA 118 Query 168 TTCAATCCCGTACAAGG-TGT--TACGGAGTAGGAGTAGAAGATTAGGACTCGTCGTCAG 224 ||||||||||||||||| || |||||| |||| ||||||||||||||||||||| || Sbjct 119 TTCAATCCCGTACAAGGCCGTAACACGGAGCAGGACTAGAAGATTAGGACTCGTCGTGAG 178 Query 225 TTCTGTTTCAGCTCCCAACGTTGAGCTCCGTACTGGACCTGATGATCTCATTTCTACCCT 284 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TTCCGTTTCAGCTCCCAACGTTGAGCTCCGTACTGGACCTGATGATCTCATTTCTACCCT 238 Query 285 CCTCTCTAAGGTTGCGAATAGTGATGGAGGTGTGACGCTAAGCCCTGAGCAGCACAAGGA 344 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 CCTCTCTAAGGTTGCAAATAGTGATGGAGGTGTGACGCTAAGCCCTGAGCAGCACAAGGA 298 Query 345 GGTGGCACAAGTGGCCGGAGAGCTTCAAAAGTACTGTGTCAAGGAGCCTGTCAAAAATCC 404 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 299 AGTGGCACAAGTGGCTGGAGAGCTTCAAAAGTACTGTGTCAAGGAGCCTGTTAAAAACCC 358 Query 405 TCTCATTTTTGGAGATTGGGAAGTGGTGTACTGTTCTAGACCAACCTCTCCTGGTGGAGG 464 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 359 TCTCATTTTCGGAGATTGGGAAGTGGTGTACTGTTCTAGACCGACCTCTCCTGGTGGAGG 418 Query 465 CTACAGAAGCGTGATAGGCCGTCTCTTCTTCAAAACGAAAGAGATGATACAAGCCATCGA 524 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 419 CTACAGAAGTGTGATAGGCCGTCTCTTCTTCAAAACGAAAGAGATGGTACAAGCCATCGA 478 Query 525 TGCTCCTGATATCGTTAGGAACAAAGTTTCCATTAATGCTTTTGGTTTTCTAGACGGAGA 584 ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| Sbjct 479 TGCTCCTGATATCGTTAGGAACAGAGTTTCCATCAATGCTTTTGGTTTTCTTGACGGAGA 538 Query 585 CGTCTCCTTGACAGGGAAGCTGAAAGCGTTGGACAGTGAGTGGGTGCAGGTGATATTTGA 644 |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 539 TGTCTCCTTGACAGGGAAGTTGAAAGCCTTGGACAGTGAGTGGGTGCAGGTGATATTTGA 598 Query 645 GCCTCCGGAAATCAAGGTTGGATCTTTGGAGTTCAAATACGGGTTCGAAAGCGAAGTGAA 704 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 599 GCCTCCGGAAATCAAGGTTGGATCTTTGGAATTCAAATACGGGTTTGAAAGCGAAGTGAA 658 Query 705 GCTTCGGATCACATACGTTGATGAGAAACTTAGGTTGGGATTGGGATCTAAAGGATCATT 764 ||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||||| Sbjct 659 GCTTCGGATCACATATGTTGATGAGAAACTTAGACTGGGATTAGGCTCTAAAGGATCATT 718 Query 765 GTTCGTCTTTAGAAGGCGTCAATAATATATACGTTTCTCCCTCGT 809 |||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 719 GTTCGTCTTTAGGAGGCGTCAATAATATATATGTTTCTCCCTCGT 763 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40410292020 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5