BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20050.1 Length=1544 Score E Sequences producing significant alignments: (Bits) Value Ahg488903 jgi|Araly1|488903|fgenesh2_kg.6__2037__AT5G20050.1 2364 0.0 > Ahg488903 jgi|Araly1|488903|fgenesh2_kg.6__2037__AT5G20050.1 Length=1528 Score = 2364 bits (1280), Expect = 0.0 Identities = 1466/1551 (95%), Gaps = 32/1551 (2%) Strand=Plus/Plus Query 1 GAAATATTTCGTCTTTGTTCTCGTCACCAGAGTGCTT-ATC----TG---AAAGAAATGA 52 ||||||||||||||||||||| ||||| |||||| || ||| | ||| |||||| Sbjct 1 GAAATATTTCGTCTTTGTTCTGGTCACGAGAGTG-TTCATCAGAAGGAAAAAAAAAATGA 59 Query 53 AGTCAGAGAAGCTCTAAAAGACC-TCTAATGGAGGACAAGAAAGCAAACATAATCGCTAC 111 ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 60 TGTCAGAGAAGCTCTAAAAG-CCTTCTAATGGAGGACAAGAAAGCAAACATAATCGCTAC 118 Query 112 TATATTAATCTTAGCCCTTGTCGTAGTGATAATCGCCGCCCGAGTTTCTCTAAAACTCTC 171 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 119 TATATTAATCTTAGCCCTTGTCGTGGTGATAATCGCCGCCCGAGTTTCTCTAAAACTCTC 178 Query 172 CAAAACATTCTATCTCATAGCCGGCGTCGACATTTCCTTGATCCTCGCCGTGATCTGTTT 231 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CAAAACATTCTATCTCATCGCCGGCGTCGACATTTCCTTGATCCTCGCCGTGATCTGTTT 238 Query 232 CCTCATAATCCGTAGCCGTTACAACAAAGAAAGAAAGCTCTTGGTATCAAGATTCGCCTC 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 239 CCTCATAATCCGTAGCCGTTACAACAAAGAAAGAAAGCTCTTGGTATCAAGATTTGTCTC 298 Query 292 CGAAGGCAGAGAGCTACGAATCGAGTACAGTTTCTTGAGAAAAGTCGCCGGAGTTCCAAC 351 ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| Sbjct 299 CGAAGGCAGAGAGCTCCGAATCGAGTACAGTTTCTTGAGAAAAGTCGCAGGGGTTCCAAC 358 Query 352 CAAATTCAAGCTCGAAGATCTTGAAGAAGCCACCGATGGATTCAGATCTTTGATCGGAAA 411 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 GAAATTCAAGCTCGAAGATCTTGAAGAAGCCACCGATGGATTCAGATCTTTGATCGGAAA 418 Query 412 AGGCGGTTCCGGTTCGGTGTTTAAAGGAGTTTTGAAAGACGGAAGTCAAGTAGCTGTgaa 471 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 AGGCGGTTCTGGTTCGGTGTTTAAAGGAGTTTTGAAAGACGGAAGTCAAGTAGCTGTGAA 478 Query 472 gagaatcgaaggagaagagaaaggagaaagagagTTCAGATCCGAAGTAGCTGCCATAGC 531 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 AAGAATCGAAGGAGAAGAGAAAGGAGAAAGAGAGTTCAGATCCGAAGTAGCTGCCATAGC 538 Query 532 TTCCGTTCAGCACAAGAATCTAGTTCGTCTTTACGGTTATTCGTCTTCGACTAGCGCGAA 591 ||| |||||||||||||| ||||||||||||||||||||||||||| || | |||||| Sbjct 539 TTCTGTTCAGCACAAGAACCTAGTTCGTCTTTACGGTTATTCGTCTGCGGTTTCCGCGAA 598 Query 592 TCGTCCGAGATTCCTCGTTTACGATTATATCGTAAACTCGTCTCTCGATATCTGGATTTT 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TCGTCCGAGATTCCTCGTTTACGATTATATCGTAAACTCGTCTCTCGATATCTGGATTTT 658 Query 652 TCCGGATAGAGGAAACAGAGGAAGATCCGGAGGAGGATGCTTGTCTTGGGAACAAAGGTA 711 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 659 TCCGGATAGAGGAAACAGAAGAAGATGCGGAGGAGGATGCTTGTCTTGGGAACAAAGGTA 718 Query 712 CCAAGTTGCTATTGATGTAGCTAAAGCTCTTGCTTATCTTCATCATGATTGTCGATCTAA 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CCAAGTTGCTATTGATGTAGCTAAAGCTCTTGCTTATCTTCATCATGATTGTCGATCTAA 778 Query 772 GATCTTGCATCTCGATGTTAAACCCGAAAACATTCTACTAGACGAGAATTTCCGAGCGGT 831 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 779 GATCTTGCATCTTGATGTTAAACCTGAAAACATTCTACTAGACGAGAATTTCCGAGCGGT 838 Query 832 GGTAACCGATTTCGGACTCTCTAAGCTGATTGCTAGAGATGAGAGCAGAGTACTAACGGA 891 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 839 GGTAACCGATTTCGGACTCTCTAAGCTGATTGCTAGAGATGAGAGCAGAGTGCTAACGGA 898 Query 892 TATCCGTGGTACTCGGGGGTATTTAGCCCCCGAGTGGCTTCTTGAACACGGTATTTCGGA 951 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 899 TATCCGTGGGACTCGGGGGTATTTAGCCCCCGAATGGCTTCTTGAACACGGTATTTCGGA 958 Query 952 GAAATCCGATGTGTATAGCTACGGGATTGTGTTACTAGAGATGATCGGAGGACGGAGAAG 1011 ||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 959 GAAATCCGACGTTTACAGCTACGGGATTGTGTTACTAGAAATGATCGGAGGACGGAGAAG 1018 Query 1012 CATTTCAAGGGTAGAAGTTAAGGAAACAAAAAAGAAGAAATTAGAGTATTTCCCAAGGAT 1071 ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1019 CATTTCAAGGGTAGAGGTTAAGGAAACAAAAAAGAAGAAGTTGGAGTATTTCCCAAGGAT 1078 Query 1072 TGTGAACCAAAAGATGAGAGAAAGAAAGATAATGGAGATTGTTGATCAAAGGCTGATTGA 1131 ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || Sbjct 1079 TGTGAACCAAAAGATGAGAGAAAGAAAAATAATGGAGATTGTAGATCAAAGGCTGATAGA 1138 Query 1132 AGTTAATGAGGTAGATGAAGAGGAAGTGATGAAATTGGTGTGTGTGGCTTTGTGGTGTAT 1191 || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1139 AGCCAATGAGGTAAATGAAGAGGAAGTGATGAAATTGGCGTGTGTGGCTTTGTGGTGTAT 1198 Query 1192 ACAAGAGAAGTCTAAGAAAAGGCCTGATATGACTATGGTTATTGAGATGCTTGAAGGGAG 1251 ||||||||| |||||||| |||||||||||||||||||| ||||| ||| |||||||||| Sbjct 1199 ACAAGAGAAATCTAAGAATAGGCCTGATATGACTATGGTAATTGAAATGATTGAAGGGAG 1258 Query 1252 AGTTCCGGTGAACGAGCCACCGGATTCAGATGTTGTTGTGGTCGATCTTTTGGCGGCTGA 1311 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 AGTTCCGGTGAACGAGCCGCCGGATTCAGATGTTGTTGTGGTCGATCTTTTGGCGGCTGA 1318 Query 1312 TGATGATGATGCAAGTACCGGTGTTCGACGGGTAGTAAATATCCCGAAATTGCAAATCCA 1371 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1319 TGATGATGATGCAAGTACCGGTGTTCGACGGGTAATAAATATCCCGAAATTGCAAATCCA 1378 Query 1372 TAGGGAGAGGAATTTTCGTTTATCATCCATTTGCTCTAGTATCATATCTCCCATCTCTCC 1431 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1379 TAGGGAGAGGAATTTTCGTTTATCATCCATTTGCTCTAGTATCATATCTCCCATATCTCC 1438 Query 1432 ACGCTAGTTATTTTTGTGTGTTCATATTGGTTTTGTTTCAATCAAAAACTGAGTATGTTT 1491 ||||||| |||||||| | || | ||| ||||| |||||||||||||||| Sbjct 1439 ACGCTAG--ATTTTTGT-T-TT------G-TTT-----CAATCTAAAACTGAGTATGTTT 1482 Query 1492 GGTGTGTTACTATTAATCAACCTTTGATACGTATAATAAACACAATTTATA 1542 ||||||||||||||||||| ||||||| ||| | ||||||||||||||| Sbjct 1483 GGTGTGTTACTATTAATCA---TTTGATATGTA-A-TAAACACAATTTATA 1528 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57820991910 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5