BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20060.2
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941559 jgi|Araly1|941559|scaffold_602103.1 1284 0.0
Ahg905715 jgi|Araly1|905715|Al_scaffold_0003_2843 577 9e-164
> Ahg941559 jgi|Araly1|941559|scaffold_602103.1
Length=801
Score = 1284 bits (695), Expect = 0.0
Identities = 747/773 (97%), Gaps = 0/773 (0%)
Strand=Plus/Plus
Query 556 TCCTCCAGTATGAGTATCTCCGGTGCTGCAGTTGGTTCAGGCAGAAATTTAAGAAGAGCG 615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 TCCTCCAGTATGAGTATCTCCGGTGCTGCAGTTGGTTCAGGCAGAAATTTAAGAAGAGCT 73
Query 616 GTAGAGTTTGGGAAAACTCATGTGGTTAGGCCTAAAGGGAAACATCAAGCAACTATTGTC 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 GTAGAGTTTGGGAAAACTCATGTGGTTAGGCCTAAAGGGAAACATCAAGCAACTATTGTC 133
Query 676 TGGTTACATGGGCTTGGGGACAATGGCTCGAGCTGGTCCCAGCTTTTGGAGACCCTTCCC 735
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TGGCTACATGGGCTTGGGGACAATGGCTCGAGCTGGTCCCAGCTTTTGGAGACCCTTCCC 193
Query 736 CTTCCAAATATCAAATGGATTTGCCCGACTGCTCCTTCTCAACCAATAAGTTTATTTGGT 795
|||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||
Sbjct 194 CTTCCAAATATCAAATGGATATGCCCGACTGCTCCTTCTCAGCCAATAAGTCTGTTTGGT 253
Query 796 GGTTTTCCCTCCACAGCTTGGTTTGATGTTGTGGACATCAATGAAGATGGACCTGATGAT 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GGTTTTCCCTCCACAGCTTGGTTTGATGTTGTGGACATCAATGAAGATGGACCTGATGAC 313
Query 856 ATGGAAGGATTGGATGTGGCTGCTGCACATGTTGCAAATCTGTTGTCGAATGAGCCTGCT 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 ATGGAAGGATTGGATGTGGCTGCTGCACATGTTGCAAATCTGTTGTCGAATGAGCCTGCT 373
Query 916 GACATTAAATTAGGTGTTGGAGGATTCAGCATGGGTGCGGCGACATCTCTATATTCTGCA 975
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 374 GACATTAAATTAGGTGTTGGAGGGTTCAGCATGGGTGCAGCGACATCTCTGTATTCTGCA 433
Query 976 ACTTGTTTTGCTCTCGGTAAATATGGAAATGGCAATCCATACCCTATCAATTTAAGCGCA 1035
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 434 ACTTGTTTTGCTCTCGGTAAATATGGAAATGGCAATCCGTACCCTATCAATTTAAGCACA 493
Query 1036 ATCATAGGCTTAAGCGGCTGGCTTCCTTGTGCAAAGACATTGGCTGGCAAACTAGAAGAG 1095
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ATCATAGGCTTAAGCGGTTGGCTTCCTTGTGCAAAGACATTGGCTGGCAAACTAGAAGAG 553
Query 1096 GAACAGATCAAGAACCGAGCTGCATCGTTGCCCATTGTTGTCTGTCATGGAAAAGCTGAT 1155
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 554 GAACAGATCAAGAACCGAGCTGCATCATTGCCCATTATAGTCTGTCATGGAAAAGCTGAT 613
Query 1156 GATGTGGTACCGTTCAAGTTTGGGGAGAAATCTTCACAGGCTTTGCTTTCAAATGGGTTT 1215
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 614 GATGTGGTACCGTTCAAGTTTGGGGAGAAATCTTCCCAAGCCTTGCTTTCAAATGGGTTT 673
Query 1216 AAGAAGGTGACCTTCAAACCTTACAGTGCACTTGGTCACCACACAATCCCACAGGAGTTG 1275
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 674 AAGAAGGTGACCTTTAAACCTTACAGTGCACTTGGTCACTACACAATCCCACAGGAGATG 733
Query 1276 GATGAGTTGTGCGCATGGTTGACATCCACGCTCAGCCTCGAAGGTTGATACTT 1328
|||||||||||||| |||||||||||||| ||| ||||||||||||||| |||
Sbjct 734 GATGAGTTGTGCGCGTGGTTGACATCCACCCTCGGCCTCGAAGGTTGATGCTT 786
> Ahg905715 jgi|Araly1|905715|Al_scaffold_0003_2843
Length=381
Score = 577 bits (312), Expect = 9e-164
Identities = 350/369 (95%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 949 GGTGCGGCGACATCTCTATATTCTGCAACTTGTTTTGCTCTCGGTAAATATGGAAATGGC 1008
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 GGTGCAGCGACATCTCTGTATTCTGCAACTTGTTTTGCTCTCGGTAAATATGGAAATGGC 72
Query 1009 AATCCATACCCTATCAATTTAAGCGCAATCATAGGCTTAAGCGGCTGGCTTCCTTGTGCA 1068
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 73 AATCCGTACCCTATCAATTTAAGCACAATCATAGGCTTAAGCGGCTGGCTTCCTTGTGCA 132
Query 1069 AAGACATTGGCTGGCAAACTAGAAGAGGAACAGATCAAGAACCGAGCTGCATCGTTGCCC 1128
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 133 AAGACATTGGGTGGCAAACTAGAAGAGGAACAGATCAAGAACCGAGCTGCAACGTTGCCC 192
Query 1129 ATTGTTGTCTGTCATGGAAAAGCTGATGATGTGGTACCGTTCAAGTTTGGGGAGAAATCT 1188
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ATTATAGTCTGTCATGGAAAAGCTGATGATGTGGTACCGTTCAAGTTTGGGGAGAAATCT 252
Query 1189 TCACAGGCTTTGCTTTCAAATGGGTTTAAGAAGGTGACCTTCAAACCTTACAGTGCACTT 1248
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 253 TCACAGGCCTTGCTTTCAAATGGGTTTAAGAAGGTCACCTTTAAACCTTACAGTGCACTT 312
Query 1249 GGTCACCACACAATCCCACAGGAGTTGGATGAGTTGTGCGCATGGTTGACATCCACGCTC 1308
|||||| |||||||||| |||||| ||||||||||||| | |||||||||||||| |||
Sbjct 313 GGTCACTACACAATCCCGCAGGAGATGGATGAGTTGTGTACGTGGTTGACATCCACCCTC 372
Query 1309 AGCCTCGAA 1317
||||||||
Sbjct 373 GGCCTCGAA 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5