BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20070.1 Length=1530 Score E Sequences producing significant alignments: (Bits) Value Ahg488907 jgi|Araly1|488907|fgenesh2_kg.6__2041__AT5G20070.1 2259 0.0 > Ahg488907 jgi|Araly1|488907|fgenesh2_kg.6__2041__AT5G20070.1 Length=1481 Score = 2259 bits (1223), Expect = 0.0 Identities = 1355/1420 (95%), Gaps = 3/1420 (0%) Strand=Plus/Plus Query 15 AAACAATGGGGAGACGAAACCAGAGATGCTTGctctcttcctctcttcttcttcgtatcc 74 |||||||||||||| |||| |||||||||| |||||||| ||||| |||||||||||||| Sbjct 2 AAACAATGGGGAGAAGAAAACAGAGATGCTCGCTCTCTTTCTCTCCTCTTCTTCGTATCC 61 Query 75 aactctctctttcctctccAGATCAGTAACTCTAAACTTAGCCAGAACAACAACACTCTC 134 ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 62 AACTCTCTCTTTCTTCTCCAGATCAGTAACTCTAAACTTAGCAAGAAGAACAACACTCTC 121 Query 135 AGCTCTCACAATGTCGATGAACCTAAAGACTCATGCCTTCGCAGGCAATCCCTTGAAGTC 194 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 TGCTCTCACAATGTCGATGAACCTAAAGACTCATGCCTTCGCAGGCAATCCCTTGAAGTC 181 Query 195 GAAAACTCCGAAATCTACCGATCCATTCTCACCCACCTCCGCTTTCGAATCTCTGAAAAC 254 |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct 182 CAAAACTCCGAAATCCACCGATCCTTTCTCACCCACCTCCGCTTTCGAATCCCTGAAAAC 241 Query 255 CCTAATTCCAGTAATCCCTAATCACTCAACACCTTCCCCTGATTTTAAAGTCCTTCCCTT 314 |||||||||||| ||||| |||||||| |||| ||||||||||||||||||||||||||| Sbjct 242 CCTAATTCCAGTGATCCCAAATCACTCCACACATTCCCCTGATTTTAAAGTCCTTCCCTT 301 Query 315 TAGCAAGGGTCGTCCACTGGTGTTCTCAAGCGGTGGAGATGCTAATACGACGCCGATTTG 374 |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 302 TAGCAAAGGCCGTCCACTGGTGTTCTCGAGCGGTGGAGATGCTAATACGACGCCGATTTG 361 Query 375 GCATCTGGGTTGGGTCAGCTTGGCTGATTGTAAGGTTTTGTTAGCAAGTTGTGGGGTTGA 434 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 362 GCATCTGGGTTGGGTCAGCTTGGCTGATTGTAAGGTTTTGTTAGCGAGTTGTGGGGTTGA 421 Query 435 TCTGAATGAGGACTCACTCGTGTATTTAGGACCCAAGTTGGAAGAAGATTTGGTGTATTG 494 |||||| |||||||| || ||||||||||| |||||| |||||||||||||||||||||| Sbjct 422 TCTGAACGAGGACTCGCTTGTGTATTTAGGTCCCAAGGTGGAAGAAGATTTGGTGTATTG 481 Query 495 GGCTGTTGATTTGGCAGAGGATGGTTTCGTTTCTGAATTGGGAGGTAGGAAGTTGTGTTT 554 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 482 GGCTGTTGATTTGGCAGAGGATGGTTTCGTTTCTGAATTGGGAGGGCGGAAGTTGTGTTT 541 Query 555 TGTTGAGCTTCGAACCCTAATGGTAGCTGCTGATTGGGCGGATCAACGTGCTATGGATGA 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TGTTGAGCTTCGAACCCTAATGGTAGCTGCTGATTGGGCGGATCAACGTGCTATGGATGA 601 Query 615 GTTGGCTATTGCCGGCAATGCCAGGGCGTTACTTGAATGGCACAACGTGTCACAATTTTG 674 |||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||| Sbjct 602 ATTGGCTATTGCCGGCAATGCCAGGGCATTACTTGAATGGCACATCGTATCACGATTTTG 661 Query 675 TGGATCATGTGGAAGTAAAACTTTTCCAAAGGAAGCAGGAAGGAGAAAACAATGCTCAGA 734 |||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 662 TGGATCTTGTGGAGGTAAAACTGTTCCAAAGGAAGCAGGAAGGAGAAAACAATGCTCAAA 721 Query 735 CGAAACATGCAGAAAGAGGGTCTATCCCCGTGTTGATCCGGTGGTTATAATGTTAGTTAT 794 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 722 CGAAACATGCAGAAAGAGGGTCTATCCCCGTGTTGACCCGGTGGTTATTATGTTAGTTAT 781 Query 795 TGATCGAGAAAATGATCGCGCACTTTTAAGCAGGCAATCTAGATATGTACCGAGAATGTG 854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 TGATCGAGAAAATGATCGCGCACTTTTAAGCAGGCAATCTAGATATGTACCGAGAATGTG 841 Query 855 GAGTTGTTTAGCTGGATTTATTGAGCCAGGGGAAAGCTTAGAAGAGGCTGTGAGGCGGGA 914 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 GAGCTGTTTAGCTGGATTTATTGAGCCAGGGGAAAGCTTAGAAGAGGCTGTGAGGCGGGA 901 Query 915 AACATGGGAAGAGACAGGCATTGAAGTAGGAGATGTTGTATACCACAGCTCTCAGCCTTG 974 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 902 AACATGGGAAGAGACAGGCATTGAAGTAGGAGAAGTTGTCTACCACAGCTCTCAGCCTTG 961 Query 975 GCCTGTGGGACCAAGTAGCATGCCATGCCAATTGATGCTCGGTTTCTTTGCTTTCGCCAA 1034 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 962 GCCTGTGGGACCAAGTAGCATGCCATGCCAATTGATGCTGGGGTTCTTTGCTTTCGCCAA 1021 Query 1035 GACGCTCGACATAAACGTAGACAAAGAAGAGTTAGAAGATGCTCAATGGCACAGTAGAGA 1094 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 GACGCTTGACATAAACGTAGACAAAGAAGAGTTAGAAGATGCTCAATGGCACAGTAGAGA 1081 Query 1095 AGAGGTGAAGAAAGCATTGGCGGTTGCAGAATACAGGAAGGCTCAAAGAACAGCAGCTGC 1154 |||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||| Sbjct 1082 AGAGGTGAAGAAAGCACTGGCGGTTGCAGAATACAGGAAAGCGCAAAGAACAGCGGCTGC 1141 Query 1155 AAAGGTAGAGCAGATCTGTAAAGGTGTGGAGAGAAGCCAGAGTCTATCAACTGATTTCAA 1214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1142 AAAGGTAGAGCAGATCTGTAAAGGTGTGGAGAGAAGCCAGAGTCTATCAACTGATTTCAA 1201 Query 1215 TCTTGAAAGCGGTGAGCTTGCTCCTATGTTTATCCCGGGGCCATTTGCCATCGCGCACCA 1274 ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1202 TCTCGAAAGCGGTGAGCTTGCTCCTATGTTTATCCCAGGGCCATTTGCCATTGCGCACCA 1261 Query 1275 CCTGATCTCAGCATGGGTAAATCAGGCTCCTGACGATGTTCACTCAAAACAACAAGCGGG 1334 ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| || Sbjct 1262 CCTGATCTCAGCATGGGTAGATCAAGCTCCTGGCGATGTTCACTCAAAACAACAAGCCGG 1321 Query 1335 TGTCTCTCTCTCAAGTTTGTAGCTAGAAAGATGAACTTAGATGCTTAGAAACCAAACGTT 1394 |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1322 TGTCTCTCTCTCAAGTTTGTAGCTAGAAAGATGAGTTT-GATGCTTAGAAACCAAACGTT 1380 Query 1395 TGCTATGGCTTCT-ATGCTTATTTTGAATTGCTGAGTCCT 1433 |||||||| |||| || | ||| |||||||| |||||||| Sbjct 1381 TGCTATGG-TTCTGATACGTATCTTGAATTGATGAGTCCT 1419 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57287728480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5