BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20130.1 Length=853 Score E Sequences producing significant alignments: (Bits) Value Ahg488915 jgi|Araly1|488915|fgenesh2_kg.6__2049__AT5G20130.1 1118 0.0 > Ahg488915 jgi|Araly1|488915|fgenesh2_kg.6__2049__AT5G20130.1 Length=791 Score = 1118 bits (605), Expect = 0.0 Identities = 744/806 (92%), Gaps = 29/806 (4%) Strand=Plus/Plus Query 12 ATTGTGGTGGGATAAGGGAGAGGAAGAGAGAGCGATGGGACACGTAACGAGGCTATTGAT 71 ||||||||||||||||||||| | || ||| |||||||||||||| |||||| |||| Sbjct 1 ATTGTGGTGGGATAAGGGAGA-G--GATAGA--GATGGGACACGTAATGAGGCTGCTGAT 55 Query 72 AAACCCTTCGTC-T--TCCTCGCCACTTCTCCACCTCCGTTGTTGCCACCGGACTCTTGA 128 ||||||||| || | |||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 56 AAACCCTTCTTCTTCCTCCTCGCCTCTTCTCCACCTCCGTTGTTCCCACCGGACTCTTGA 115 Query 129 CCCTAACTCTGTCTTCTCTCTTCGAACCTCAATCACCAAAAGCAAGGGACGATTCTCTTG 188 ||| |||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| Sbjct 116 CCCCAACTCTGTCTTCTCTCTTCGAACCGCAATTACCAAAAGCAAGGCACGATTCTCTTG 175 Query 189 TCTTTTCTCCGGCGGCAACCAGAGAGAGGAGCAAGCTCGTAAATCATTGGAAAGCGCTCT 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 TCTTTTCTCCGGCGGCAACCAGAGAGAGGAGCAAGCTCGTAAATCATTGGAAAGCGCTCT 235 Query 249 TGGTGGGAAGAAGAATGAGTTTGAGAAGTGGGACAAAGAGATCAAGAAAAGAGAAGAATC 308 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 236 TGGTGGGAAGAAAAATGAGTTTGACAAGTGGGACAAAGAGATCAAGAAAAGAGAAGAATC 295 Query 309 Cggtggcggaaatggtggtaaaggtggaggaggaggaggttggtttggaggtggtggttg 368 |||||||||||| |||| | ||||||||||||| |||||||||||||| ||||| Sbjct 296 CGGTGGCGGAAA---TGGT--A----GAGGAGGAGGAGGCTGGTTTGGAGGTGGCGGTTG 346 Query 369 gttTAGTGGCGACCATTTCTGGAAAGAGGCACAACAGATTGCCTTTACCCTCTTAGCAAT 428 ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 347 GTTCAGTGGCGACCATTTCTGGAATGAAGCACAACAGATTGCCTTTACCCTCTTAGCAAT 406 Query 429 ACTTGCCGTGTATATGGTGGTTGCGAAAGGTGAAGTCATGGCTGCATTTGTGTTAAACCC 488 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 ACTAGTCGTGTATATGGTGGTTGCGAAAGGTGAAGTCATGGCTGCATTTGTGTTAAACCC 466 Query 489 GTTGTTGTATGCGTTGCGAGGAACACGGGAAGGTTTGTCTTCTCTAAGCTCCAAACTCAT 548 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 467 GTTGTTGTATGCGTTGCGAGGAACACGAGAAGGTTTGACTTCTCTAAGCTCCAAACTCAT 526 Query 549 GGGAAGAGAAGCTTCCAAAGTGAGTGGTGACAACTCAGAGGAGATGTGGAAGAAGGAAGG 608 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 527 GGGAAGAGAAGCTTCCAAAGTGAGTGGTGACAACTCAGAGGAGATGTGGAACAAGGAAGG 586 Query 609 TTCCACTGCTAAAGAGAGCGTTGTCCGGAAATGGGGAAGTGACTGAAACACAATTCTTAA 668 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 587 TTCCACTGCTAAAGAGAGCGTTGTCCGGAAATGGGGAAGTGACTGAAACAAAATTCTTTA 646 Query 669 AGCTGACTCAAGAAGAA--TG-ACTTTGGGTGTTTTTGTAACATCAAGA-TGA-GAT-A- 721 ||| ||||||||||||| | | |||| || ||||||||||||| ||| | | ||| | Sbjct 647 AGCCGACTCAAGAAGAAAATATA-TTTGAGTTTTTTTGTAACATCGAGAATCATGATGAG 705 Query 722 AT-A--TGCAATCGACCTTTTCAGTTTTGTAATGGAGGATAGGTATT-TTCTGTGAACAA 777 || | |||||||||||||||||| |||||||||||| ||||||||| |||||||||||| Sbjct 706 ATCAAATGCAATCGACCTTTTCAGATTTGTAATGGAGTATAGGTATTCTTCTGTGAACAA 765 Query 778 GAAAGAGTGACTCTGTTTGTAACTTC 803 |||||||||||||||||||||||||| Sbjct 766 GAAAGAGTGACTCTGTTTGTAACTTC 791 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31565775276 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5