BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20140.2 Length=1416 Score E Sequences producing significant alignments: (Bits) Value Ahg351109 jgi|Araly1|351109|fgenesh1_pg.C_scaffold_6001702 1541 0.0 > Ahg351109 jgi|Araly1|351109|fgenesh1_pg.C_scaffold_6001702 Length=1143 Score = 1541 bits (834), Expect = 0.0 Identities = 1019/1106 (92%), Gaps = 22/1106 (2%) Strand=Plus/Plus Query 86 ATGGCTACCGTTAATCAGCAGC-T-T-TACCGGCCAATACTCACCGCCGTCGGAAGTGAC 142 |||||||||||| |||||||| | | |||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTACCGTTGGTCAGCAGCATCTCTACCGGCCAATACTCACCGCCGTCGGAAGTGAT 60 Query 143 TGCCGGCGGCAT-GTAACCACCCGTTTCCTCCCTGTTCCGAGACGCAA-CGTAACCACTC 200 |||||| ||| | |||||||||||||||||||||||||| || ||||| ||| | | | Sbjct 61 TGCCGGAGGC-TCGTAACCACCCGTTTCCTCCCTGTTCCAAGGCGCAATTTTAA-CTCCC 118 Query 201 GTCTACGGCCA-ATTTTGAGTCTTGAGGTGGGCAAGGAAGTGGCTTCAGCACCGTCGACA 259 | || ||| || || |||||||||||||| ||||||||||||||| | ||| ||||||| Sbjct 119 GGCTGCGG-CAGATATTGAGTCTTGAGGTTGGCAAGGAAGTGGCTCCGGCATCGTCGACG 177 Query 260 GTGAACATGGAAGAGCTCGTCGGATTCTTGTACGAGGATCTTCCTCACCT-TTTCGACGA 318 ||||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||| Sbjct 178 GTGAACATGGAAGAGCTCGTCGGATTCTTGTACAAAGATCTTCCTCACCTCTTT-GACGA 236 Query 319 CCAAGGAATCGATAAAACGGCGTACGATGAGCGCGTGAAGTTCAGAGACCCAATCACTAA 378 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 237 CCAAGGAATCGATAAAACGGCGTACGATGAGCGGGTGAAGTTCAGAGATCCAATCACTAA 296 Query 379 GCACGACACCATCTCTGGCTATCTCTTCAACATTGCT-TTCCTCAAGAATATCTTCACTC 437 ||||||||||||||| || ||||||||||||||| || || ||||||||||||||||||| Sbjct 297 GCACGACACCATCTCCGGTTATCTCTTCAACATTTCTCTT-CTCAAGAATATCTTCACTC 355 Query 438 CTCAG-TTTCAGCTTCACTGGGCTAAACAGACAGGTCCATATGAGATCACTACGAGATGG 496 ||| | ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 356 CTC-GATTTCAACTTCACTGGGCTAAACAGACAGGTCCATATGAGATAACTACAAGATGG 414 Query 497 ACAATGGTGATGAAGTTCATACCTTTACCATGGAAACCAGAACTTGTCTTCACTGGAT-T 555 ||||||||||||||||| || | |||||||||||||||||| |||||||||||||| | Sbjct 415 ACAATGGTGATGAAGTTTATGCTTTTACCATGGAAACCAGAGCTTGTCTTCACTGG-TAC 473 Query 556 ATCAATCATGGAAGTTAATCCTGAAACTAACAAATTTTGTAGTCATCTGGACTTGTGGGA 615 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct 474 ATCAATCATGGAAGTTAATCCTGAAACTAAGAAATTTTGCAGCCATCTGGACTTGTGGGA 533 Query 616 TTCTATCAAGAACAATGACTACTTTTCTCTTGAAGGTCTTGTTGATGTTTTTAAGCAGTT 675 ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 534 TTCTATCAAGAACAACGACTACTTTTCTCTGGAAGGTCTTGTTGATGTATTTAAGCAGTT 593 Query 676 ACGGATATATAAAACGCCAGACTTGGAAACTCCAAAGTATCAAATACTGAAAAGAACAGC 735 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 594 ACGGATATATAAAACGCCAGATTTGGAAACTCCAAAGTATGAAATACTGAAAAGAACAGC 653 Query 736 AAACTATGAGGTTAGAAACTATGAGCCCTTCATTGTGGTGGAGACAATTGGTGACAAGCT 795 |||||||||||| |||| ||||| |||||||| ||||||||||||| ||||||||||| Sbjct 654 AAACTATGAGGTCAGAAGGTATGAACCCTTCATAGTGGTGGAGACAAACGGTGACAAGCT 713 Query 796 TTCTGGTTCTTCAGGTTTCAACAATGTTGCTGGCTACATATTTGG-AAAGAACTCGACCA 854 ||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||| | Sbjct 714 TTCAGGCTCTTCAGGTTTCAACAATGTTGCTGGCTACATATTTGGCAAA-AACTCGACGA 772 Query 855 TGGAGAAAATACCAATGACAACTCCAGTGTTTACTCAAACAACAGATAC---TCAACTCT 911 |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 773 TGGAGAAAATACCAATGACAACCCCAGTGTTTACCCAAACAACAGATACTGATCAACTCT 832 Query 912 CTTCTGATGTCTCTGTACAAATTGTTATTCCATCAGGAAAAGATCTTAGCAGCTTACCAA 971 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 833 CTTCTGACGTCTCTGTACAAATTGTTATTCCATCAGGAAAAGATCTCAGCAGCTTACCGA 892 Query 972 TGCCTAATGAAGAAAAGGTAAATTTGAAGAAGTTGGAAGGCGGTTTTGCTGCAGCAGTGA 1031 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 893 TGCCTAATGAAGAAAAGGTAAACTTGAAGAAGTTGGAAGGCGGATTTGCTGCAGCAGTGA 952 Query 1032 AATTCAGTGGTAAACCGACAGAGGATGTTGTCCAAGCAAAAGAGAATGAACTGAGGAGCA 1091 |||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||||| Sbjct 953 AATTCAGTGGGAAACCGACAGAGGAGGTTGTCCGCGCAAAAGAGAATGGTCTGAGGAGCA 1012 Query 1092 GTCTGAGTAAAGATGGTCTGAGAGCTAAGAAAGGTTGTATGCTTGCTCGTTACAACGATC 1151 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1013 GTCTGAGTAAAGATGGTCTTAGAGCTAAGAAAGGTTGTATGCTTGCTCGTTACAACGATC 1072 Query 1152 CAGGACGAACATGGAACTTCATAATG 1177 |||||||||||||||||||||||||| Sbjct 1073 CAGGACGAACATGGAACTTCATAATG 1098 Score = 86.1 bits (46), Expect = 7e-16 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 1247 GAGGAACGAAGTTATCATATGGCTTGAAGATTTCAGTCTGGATTAG 1292 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1098 GAGGAACGAAGTTATCATATGGCTTGAAGATTTCAGTCTGGATTAG 1143 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52945440550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5