BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20190.1 Length=1081 Score E Sequences producing significant alignments: (Bits) Value Ahg488924 jgi|Araly1|488924|fgenesh2_kg.6__2058__AT5G20190.1 1598 0.0 > Ahg488924 jgi|Araly1|488924|fgenesh2_kg.6__2058__AT5G20190.1 Length=1075 Score = 1598 bits (865), Expect = 0.0 Identities = 1018/1089 (93%), Gaps = 22/1089 (2%) Strand=Plus/Plus Query 1 ATGCTTCTACGAAGCGCTTCAACGCCACTTCTAAACTCATTGGTTCATGTCTCGAGTCCA 60 ||||||||||||||||| ||||||||| |||| || |||||||||||||||||||||||| Sbjct 1 ATGCTTCTACGAAGCGCGTCAACGCCAGTTCTCAATTCATTGGTTCATGTCTCGAGTCCA 60 Query 61 AGAGATTCTCCAATCGAAACCGTTGAATCTGTTCATCAGATTCAACGACACAGATCCATA 120 || || |||||||||||| | |||||||||||||||||||||||| |||| |||| || Sbjct 61 AGGGAATCTCCAATCGAAGCTACTGAATCTGTTCATCAGATTCAACGGCACAAATCCTTA 120 Query 121 ACACTCTCTGCGTCTTCTTCCTCTTGCTGTTATAGCCCGATGTCTGTACACTCTAGCGAC 180 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 121 AAACTCTCTGCGTCTTCTTCCTCTTGCTGTTATAGCCCGATGTCTGTAAACTCTAGTGAC 180 Query 181 GATTCTTCAAGGAGGATGAAAAGAACGGCGTCAGATAGCGATCTACGACATTTGACATCG 240 || ||| ||||| |||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 181 GAATCTACAAGGTGGATGAAAAGGACGGCGTCAGAAAGCGATCTACGACATTTGACATCG 240 Query 241 ACGAAACCGCCGGTGAGTAAGTTTTTGAGCGGTGGTGCTTTGATGGAGGATGTGGATGAA 300 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| Sbjct 241 CCGAAACCGCCGGTGAGTAAGTTTTTGAGCGGTGGTGCTTTGCTGGAGGATATGGAAGAA 300 Query 301 GGAATCGGATTCGGTCTTATACGCACTTCGTCTTATGATGGTATAAGTTGGGCTTTGGAT 360 ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 301 GGAATTGGATTCGGTCTTATACGCACGTCGTCTTATGATGGTATAAGTTGGGCTTTGGAG 360 Query 361 GAAGATACTGAGGTTGCTGGCGGTGGTGGTGGTGGGATGTTTCACGGTGGAGGAAAAGGA 420 ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 361 GAAGATACTGAGGTTACTGGCGGTGGTGGTGGTGGAATGTTTCACGGTGGAGGTAAAGGA 420 Query 421 AGGAGTGGTGGTAGATCTGATGGTGGTGATGGAGGTGACGATAACACTGATGTTCATTAT 480 |||||||||||||||||||| | | | | ||||||||||| ||||||||||||||| Sbjct 421 AGGAGTGGTGGTAGATCTGA---T-G-G-T---GGTGACGATAATACTGATGTTCATTAT 471 Query 481 CGTAAGATGATTGAAGCTAATCCTGGAAATGGGATTTTTCTCAGTAATTATGCTAAATTC 540 |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 472 CGTAAGATGATTGAAGCTAATCCTGGAAATGGGATTTTTCTCAGCAATTACGCCAAATTC 531 Query 541 CTGAAGGAGGTTAGAAAAGATTACTTGAAAGCAGAGGAATATTGTGGGAGAGCTATTCTG 600 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 532 TTGAAGGAGGTTCGAAAAGATTACTTGAAAGCAGAGGAATATTGTGGAAGAGCTATTCTG 591 Query 601 GTGAGTCCTAATGATGGGAATGTTCTGGCTATGTACGCTGAGTTGGTTTGGAAGATCCAT 660 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 592 GTGAGTCCTAATGATGGGAATGTTCTAGCTATGTACGCTGAGTTGGTTTGGAAGATCCAT 651 Query 661 AAGGATTCATCTCGTGCTGAGAATTACTTCAATCAAGCTGTTGCAGCTGCTCCTGAGGAC 720 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 652 AAGGATTCATCTCGTGCTGAGACTTACTTCAATCAAGCTGTTGCAGCTGCTCCTGAGGAC 711 Query 721 TGTTATGTACAAGCTTCGTATGCACGGTTTCTATGGGATGCTgaagaggaagaagaagag 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 TGTTATGTACAAGCTTCGTATGCACGGTTTCTATGGGATGCTGAAGAGGAAGAAGAAGAG 771 Query 781 gaaaaggaagagagacatgaagaagaaCTTGAGCATCAAACTTCTCGAATGAATTTCTTC 840 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 772 GAGAAGGAAGAGAGACATGAAGAAGAACTTGAACATCAAACTTCTCGAATGAATTTCTTC 831 Query 841 ACCGGACCTTCTCCAATCACGGCCATGTCTTAAACTCGTGGTCGGCATTACCATCC--T- 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 832 ACCGGACCTTCTCCAATCACGGCCATGTCTTAAACTCGTGGTCGGCATTACCATCCAGTC 891 Query 898 TT--ATA--GATTTAGATAAACGTGTCACGTCTATGATTTTATTATCTAACCCTTTTGTT 953 || ||| |||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 892 TTTTATATAGATTTAGATATACGTGTCACGTCTATGATTTTAT---CTAACCCTTTTGTT 948 Query 954 TAATGTGAATTCTTTAGCTAAGCCTTTTTATGGGTATTTCTTTACTCGGTGTTAGAATTT 1013 ||||||||||||||||| |||||||||| |||||| ||||| | |||||||||| ||||| Sbjct 949 TAATGTGAATTCTTTAGTTAAGCCTTTT-ATGGGTGTTTCTCTGCTCGGTGTTAAAATTT 1007 Query 1014 GTCTCAGTTGTAGTAATACCACTGAAAGAATAATAAGATATGCAATAAACAATTT-GCTT 1072 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| Sbjct 1008 GTCTCAGTTGTAGTAATACCACTGAAAGAATAATAAGATATGCAATAAA-AGTTTTGCTT 1066 Query 1073 TTTGGTTGG 1081 ||||||||| Sbjct 1067 TTTGGTTGG 1075 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40257800352 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5