BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20250.4
Length=2753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941577 jgi|Araly1|941577|scaffold_602121.1 3421 0.0
> Ahg941577 jgi|Araly1|941577|scaffold_602121.1
Length=2280
Score = 3421 bits (1852), Expect = 0.0
Identities = 2156/2301 (94%), Gaps = 27/2301 (1%)
Strand=Plus/Plus
Query 334 GAGAAAACGAAGAAGAAGAAGATATGACGATTAAACCGGCGGTTCGTATTTCCGACGGGA 393
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAAAC---GAAGAAGAAGATATGACGATTAAACCGGCGGTTCGTATTTCCGACGGGA 57
Query 394 ATCTAATCATCAAAAACCGGACGATTCTAACCGGTGTACCAGATAATGTCATCACGACGT 453
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 58 ATCTAATCATCAAGAACCGGACGATTTTAACCGGTTTACCAGATAATGTCATCACGACGT 117
Query 454 CAGCATCGGAAGCTGGACCGGTAGAAGGAGTCTTCGTCGGAGCTGTATTTAACAAGGAAG 513
| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 118 CTGCATCGGAGGCTGGACCGGTCGAAGGAGTCTTCGTCGGAGCTGTATTCGACAAGGAAG 177
Query 514 AGAGTAAACACATCGTACCGATCGGTACGCTTCGCAATTCCCGGTTTATGTCTTGTTTCC 573
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 178 AGAGTAAACACGTCGTACCGATCGGTACGCTTCGTAATTCCCGGTTTATGTCTTGTTTTC 237
Query 574 GGTTTAAGCTCTGGTGGATGGCCCAGAGAATGGGAGAAATGGGCCGAGATATTCCCTACG 633
|||||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||
Sbjct 238 GGTTTAAGCTTTGGTGGATGGCCCAGAGAATGGGCGAGATGGGCCGGGATATTCCATACG 297
Query 634 AGACGCAGTTCTTATTGGTCGAGAGCAACGATGGGTCCCACCTTGAGTCTGACGGAGCTA 693
|||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 298 AGACGCAGTTCTTATTGGTCGAGAGCAACGATGGGTCCCACCTTGA-----AC----CT- 347
Query 694 ACGGCGTCGAGTGTAACCAGAAAGTTTACACCGTTTTCTTGCCGTTAATCGAAGGATCTT 753
| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 348 --GACG--GAG-CTAACCAGAAAGTTTACACCGTCTTCTTGCCGTTAATCGAAGGATCTT 402
Query 754 TCCGTTCGTGTCTCCAAGGAAACGTTAACGATGAGGTTGAGCTCTGTTTGGAGAGTGGTG 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TCCGTTCGTGTCTCCAAGGAAACGTTAACGATGAGGTTGAGCTCTGTTTGGAGAGTGGTG 462
Query 814 ACGTGGACACTAAACGGTCGTCGTTTACTCACTCTCTGTATATTCACGCCGGTACAGATC 873
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 463 ACGTCGACACTAAACGGTCGTCGTTTACTCACTCTCTTTATATTCACGCCGGTACAGATC 522
Query 874 CGTTTCAGACAATAACGGACGCTATTCGCACCGTTAAGTTGCATCTGAATAGTTTCCGTC 933
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 523 CGTTTCAGACGATAACGGAAGCTATTCGTACCGTTAAGTTGCATCTGAATAGTTTCCGTC 582
Query 934 AACGTCACGAAAAGAAGCTTCCAGGGATCGTTGACTACTTCGGATGGTGCACTTGGGACG 993
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 583 AGCGTCACGAAAAGAAACTTCCAGGGATCGTTGACTACTTCGGGTGGTGCACTTGGGACG 642
Query 994 CGTTTTATCAAGAAGTGACTCAGGAAGGCGTCGAAGCTGGTCTTAAGTCTCTCGCCGCCG 1053
||||||||||||||||||| || ||||||||||||| ||||||| |||||||| ||||||
Sbjct 643 CGTTTTATCAAGAAGTGACCCAAGAAGGCGTCGAAGATGGTCTTGAGTCTCTCTCCGCCG 702
Query 1054 GTGGTACGCCGCCGAAGTTTGTTATCATAGACGACGGTTGGCAATCAGTTGAGAGAGATG 1113
|||||||||||||||||||||| || || ||||||||||||||||| |||||||| ||||
Sbjct 703 GTGGTACGCCGCCGAAGTTTGTCATTATCGACGACGGTTGGCAATCCGTTGAGAGGGATG 762
Query 1114 CCACGGTGGAGGCCGGAGATGAGAAGAAAGAGTCA-CCGATTTTTCGACTGACGGGGATC 1172
|||||||||| |||||||||||||||||||| || || ||| |||| |||| |||||
Sbjct 763 ACACGGTGGAGACCGGAGATGAGAAGAAAGAG-CAGGCGGTTTCTCGATTGACCGGGATT 821
Query 1173 AAGGAGAACGAAAAGTTTAAGAAGAAGGATGATCCAAACGTTGGGATTAAGAACATTGTC 1232
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AAGGAGAATGAAAAGTTTAAGAAGAAGGATGATCCAAACGTTGGGATTAAGAACATTGTC 881
Query 1233 AAGATTGCTAAGGAGAAACACGGTTTGAAATATGTTTACGTGTGGCACGCGATAACGGGT 1292
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 882 AAGATTGCCAAGGAGAAACACGGTTTGAAATACGTTTACGTGTGGCACGCGATAACGGGT 941
Query 1293 TATTGGGGCGGAGTTAGACCCGGGGAAGAATACGGATCTGTTATGAAATATCCTAATATG 1352
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||
Sbjct 942 TATTGGGGCGGAGTTAGACCCGGGGGAGAATACGGATCTGTGATGAAGTATCCTAATATG 1001
Query 1353 TCAAAGGGTGTGGTGGAGAATGATCCGACGTGGAAGACTGATGTAATGACGCTGCAAGGG 1412
|||||||||||||||||||| ||||| ||||||||||| ||| ||||| |||||||||||
Sbjct 1002 TCAAAGGGTGTGGTGGAGAACGATCCAACGTGGAAGACGGATATAATGGCGCTGCAAGGG 1061
Query 1413 TTGGGTTTGGTTAGCCCCAAGAAAGTGTATAAGTTTTACAATGAGCTTCATAGTTACTTG 1472
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1062 TTGGGTTTGGTTAGTCCCAAGAAAGTGTATAAGTTCTACAATGAGCTTCATAGTTACTTG 1121
Query 1473 GCTGATGCTGGCGTGGACGGTGTGAAAGTGGATGTGCAGTGTGTATTGGAGACTTTGGGT 1532
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1122 GCTGATGCTGGTGTGGACGGTGTGAAAGTGGATGTGCAGTGTATATTGGAGACTTTGGGT 1181
Query 1533 GGTGGTTTAGGCGGTCGGGTTGAGCTGACTCGTCAGTTTCATCAAGCTCTTGACTCCTCT 1592
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1182 GGTGGTTTAGGCGGTCGGGTTGAGTTAACTCGTCAGTTTCATCAAGCTCTTGACTCCTCT 1241
Query 1593 GTTGCTAAGAACTTCCCGGATAATGGCTGCATTGCTTGTATGAGCCATAATACGGATGCT 1652
||||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1242 GTTGCAAAAAACTTCCCTGACAATGGCTGCATTGCTTGTATGAGCCACAATACGGATGCT 1301
Query 1653 CTTTACTGCTCGAAGCAAGCAGCTGTGATTAGAGCATCAGATGATTTCTATCCACGGGAT 1712
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1302 CTCTACTGCTCGAAGCAAGCAGCTGTGATTAGAGCATCAGATGATTTCTACCCACGCGAT 1361
Query 1713 CCGGTGTCTCATACCATCCATATAGCCTCCGTTGCTTATAACAGTGTGTTCTTGGGAGAG 1772
||||||||||| |||||||||||||| || ||||| || |||||||||||||||||||||
Sbjct 1362 CCGGTGTCTCACACCATCCATATAGCTTCGGTTGCATACAACAGTGTGTTCTTGGGAGAG 1421
Query 1773 TTTATGCAGCCTGACTGGGATATGTTCCATTCCGTGCACCCTGCTGCAGAGTATCATGCC 1832
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1422 TTTATGCAGCCTGACTGGGATATGTTCCATTCCGTGCACCCTGCAGCAGAGTACCATGCC 1481
Query 1833 TCTGCTAGGGCCATCAGTGGTGGGCCTCTCTATGTCAGTGATTCTCCTGGAAAGCACAAC 1892
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1482 TCTGCGAGGGCCATCAGTGGTGGGCCTCTCTATGTCAGTGATGCTCCTGGAAAGCACAAC 1541
Query 1893 TTTGAGCTTCTAAGAAAGCTTGTATTGCCTGATGGATCGATTCTTCGTGCTCGACTCCCT 1952
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1542 TTTGAGCTTCTAAGAAAGCTTGTATTGCCTGATGGATCGATTCTTCGTGCTCGATTGCCT 1601
Query 1953 GGTAGACCAACTCGCGATTGTTTGTTCGCTGATCCTGCCCGTGATGGTGTCAGCTTGCTA 2012
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1602 GGTAGACCGACTCGCGATTGTTTGTTCGCAGATCCTGCCCGTGATGGTGTCAGCTTGCTA 1661
Query 2013 AAGATATGGAACATGAACAAGTACACTGGAGTTCTTGGCGTGTATAACTGCCAAGGAGCA 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AAGATATGGAACATGAACAAGTACACTGGAGTTCTTGGCGTGTATAACTGCCAAGGAGCA 1721
Query 2073 GCTTGGAGCAGCACAGAGAGAAAAAACATTTTCCACCAGACTAAAACTGATAGCCTCACT 2132
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1722 GCTTGGAGCAGCACAGAAAGAAAAAACATCTTCCACCAGACAAAAACTGATAGCCTCACT 1781
Query 2133 GGCTCCATTCGTGGTCGTGATGTGCATTCAATATCGGAGGCCTCCACTGATCCAACA-AC 2191
|||||||||||||||||||||||||||| |||||| ||||||| ||||||||| | ||
Sbjct 1782 GGCTCCATTCGTGGTCGTGATGTGCATTTAATATCCAAGGCCTCTACTGATCCA-CGGAC 1840
Query 2192 CTGGAATGGAGACTGTGCTGTTTACTCCCAGAGCAGAGGCGAACTTATTGTTATGCCATA 2251
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1841 CTGGAATGGAGACTGTGCTGTTTACTCCCAGAGCAGAGGCGAACTTATCATTATGCCATA 1900
Query 2252 CAATGTGTCTCTTCCAGTCTCACTCAAAATCCGTGAGCACGAGATCTTCACGGTGAGCCC 2311
|||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 1901 CAATGTGTCTCTTCCAATCTCACTCAAAATCTGTGAGCACGAGATCTTCACCGTGAGTCC 1960
Query 2312 CATTA-GTCATCTTG-T--TGATGGTGTATCTTTTGCCCCAATTGGTCTAGTAAACATGT 2367
||||| | ||||| | | ||||||| | || ||||| || | ||||| ||||||||||
Sbjct 1961 CATTAAG-CATCTGGCTACTGATGGTATCTCATTTGCTCCGCTCGGTCTTGTAAACATGT 2019
Query 2368 ACAATTCGGGAGGAGCTATCGAAGGACTTAGATATGAAGCCGAGAAGATGAAAGTGGTAA 2427
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2020 ACAATTCGGGAGGAGCTATCGAAGGACTTAAATATGAAGCCGAGAAGATGAAAGTGGTAA 2079
Query 2428 TGGAAGTTAAAGGATGTGGCAAATTCGGATCTTACTCTTCTGTGAAGCCTAAGAGATGCG 2487
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2080 TGGAAGTTAAAGGGTGTGGCAAATTCGGATCTTACTCTTCTGTGAAGCCTAAGAGGTGCG 2139
Query 2488 TTGTTGAGTCAAATGAGATTGCATTCGAGTACGATTCCTCCTCTGGATTGGTCACCTTTG 2547
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2140 TCGTTGAGTCACATGAGATTGCATTCGAGTACGATTCCTCCTCTGGATTGGTCACCTTTG 2199
Query 2548 AGTTAGACAAAATGCCTATAGAGAACAAACGATTTCATCTGATCCAAGTTGAGTTATGAA 2607
|||| |||||||||||| |||||| |||| |||| ||||||||| |||||||| ||||||
Sbjct 2200 AGTTGGACAAAATGCCTGTAGAGACCAAAAGATTACATCTGATCGAAGTTGAGCTATGAA 2259
Query 2608 GAGTGATTCATACAATTCATT 2628
|||||||||||||||||||||
Sbjct 2260 GAGTGATTCATACAATTCATT 2280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103872098115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5