BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20300.1 Length=2564 Score E Sequences producing significant alignments: (Bits) Value Ahg941582 jgi|Araly1|941582|scaffold_602126.1 3818 0.0 > Ahg941582 jgi|Araly1|941582|scaffold_602126.1 Length=2404 Score = 3818 bits (2067), Expect = 0.0 Identities = 2281/2385 (96%), Gaps = 11/2385 (0%) Strand=Plus/Plus Query 64 AATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAATGGCATCATCTAGACC 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20 AATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAATGGCATCATCTAGACC 79 Query 124 ACTTTTGGGAAGTGACCCTTTTTTCCGTGACCCTCATCAAGAACAAGATAACCACTCTCA 183 |||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| Sbjct 80 ACTTTTGGGAAGTGACCCTTTTTTCCGTGA--CTC-TCAAGAACAAGATAACCTGTCTCA 136 Query 184 AGCACCTGCCGCACCACAACCAGTGAC-ACTCTCGGAACCACCATGTTCAACCAGTAGTG 242 || |||||| |||||| |||||||||| | | | |||| ||||||||||||||||| ||| Sbjct 137 AGTACCTGCTGCACCAGAACCAGTGACAAGT-TTGGAAGCACCATGTTCAACCAGTGGTG 195 Query 243 ATTTAGAAATTCTGCCTCCTCTCTCTCAGCAACAAGTTCCACTTGAAAGCTTGTACCAGT 302 || ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 196 ATGTAGAAATTCAGCCTCCTCTCTCTCAGCAACAAGTTCCACTCGAAAGCTTGTACCAGT 255 Query 303 CAAGTATTGATCTTAACGGAAAGAAACATAATCCACTAGCAAAGATTGGTGGCCTTCAAG 362 |||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||| |||| Sbjct 256 CAAGTATTGATCTTAATGGAATGAAACCTAATCCACTAGCAAAGATTGGTGACCTCCAAG 315 Query 363 TGCAGTTCTTACGCCTTGTTCAAAGGTTTGGGCAGTCACAGAATAATATTCTAGTCTCCA 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 TGCAGTTCTTACGCCTTGTTCAAAGGTTTGGGCAGTCACAGAATAATATTCTAGTCTCCA 375 Query 423 AGGTTTTGTATCGGGTACATCTTGCGATGCTGATACGAGCTGAGGAATCAGAACTTAAGA 482 ||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| | Sbjct 376 AGGTTTTATATCGGGTACACCTTGCGATGATGATACGAGCTGAGGAATCAGAACTTAA-A 434 Query 483 A-TGTAAAACTTAGGCAAGATAGGGCCAAAGCTTTAGCAAGGGAGCAAGAATCATCTGGC 541 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 435 ACTGTAAAACTTAGGCAAGATAGGGCCAAAGCTTTAGCAAGGGAGCAAGAATTATCTGGC 494 Query 542 ATACCGGAGCTTGATTTCTCACTTAGAATCCTTGTCCTGGGGAAAACAGGTGTCGGCAAG 601 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 495 ATACCGGAGCTGGATTTCTCACTTAGAATCCTTATCCTGGGGAAAACAGGTGTTGGCAAG 554 Query 602 AGTGCAACCATAAACTCTATTTTTGGTCAGCCCAAAAGTGAGACTGATGCTTTCCGACCG 661 |||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| Sbjct 555 AGTGCAACCATAAACTCTATTTTTGGTCAGTCCAAAAGTGAAACCGATGCTTTCCGACCG 614 Query 662 GGCACAGATCGCATAGAAGAGGTTATGGGAACTGTCAGTGGAGTTAAAGTTACCTTTATT 721 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 615 GCCACAGATCGCATAGAAGAGGTTATGGGAACTGTCAGTGGAGTTAAAGTAACCTTTATT 674 Query 722 GATACCCCTGGTTTTCACCCACTGTCATCTTCTAGCACAAGAAAAAACCGAAAGATTCTC 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 675 GATACCCCTGGTTTTCACCCACTGTCATCTTCTAGCACAAGAAAAAACCGAAAGATTCTC 734 Query 782 CTATCTATTAAGAGATATGTTAAGAAGCGTCCACCTGATGTAGTTCTTTACTTGGACCGC 841 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 735 CTCTCTATTAAGAGATACGTTAAGAAGCGTCCACCTGATGTAGTTCTTTACTTGGACCGC 794 Query 842 CTTGATATGATCGACATGCGATACAGTGATTTCTCCCTCCTGCAGCTTATAACTGAAATC 901 |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| Sbjct 795 CTTGATATGATCGACATGCGATACAGTGATTTTTCCCTCTTGCAGCTTATAAGTGAAATC 854 Query 902 TTTGGTGCAGCTATATGGTTAAACACGATACTTGTAATGACGCATTCCGCAGCTACTACA 961 ||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| Sbjct 855 TTTGGTGCAGCTATATGGTTAAACACGATTCTTGTAATGACGCATTCCTCAACTACTACA 914 Query 962 GAAGGACGTAATGGACAATCTGTGAACTATGAGTCATATGTGGGCCAGCGCATGGATGTG 1021 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 GAAGGACGTAATGGACAATCTGTGAACTATGAGTCATATGTGGGCCAGCGCATGGATGTG 974 Query 1022 GTTCAACATTATATACATCAGGCTGTGTCTGATACAAAACTAGAAAACCCTGTTCTGTTA 1081 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 975 GTTCAGCATTATATACATCAGGCTGTGTCTGATACAAAACTAGAAAACCCTGTGCTGTTA 1034 Query 1082 GTTGAAAATCATCCCAGCTGTAAAAAGAATCTTGCTGGTGAGTATGTTCTTCCAAATGGG 1141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1035 GTTGAAAATCATCCCAGCTGTAAAAAGAATCTTGCTGGTGAGTATGTTCTTCCAAATGGG 1094 Query 1142 GTGGTATGGAAGCCTCAGTTTATGTTTCTGTGCGTTTGTACCAAAGTTCTTGGCGATGTC 1201 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1095 TTGGTATGGAAGCCTCAGTTTATGTTTTTGTGCGTTTGTACCAAAGTTCTTGGCGATGTC 1154 Query 1202 CAGTCTTTACTGAGATTTCGTGACAGCATTGGCCTGGGTCAGCCAAGTAGTACCCGAACA 1261 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1155 CAGTCTTTACTGAAATTTCGTGACAGCATTGGCCTGGGACAGCCAAGTAGTACCCGAACA 1214 Query 1262 GCTTCCCTTCCTCATCTTCTTTCAGTTTTTCTGCGCCGTCGCTTATCATCAGGTGCAGAT 1321 ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1215 GCTTCTCTTCCTCATCTTCTTTCAGTTTTTCTGCGCCGTCGCTTATCAGCTGGTGCAGAT 1274 Query 1322 GAAACAGAGAAAGAGATAGATAAGCTTCTGAATTTGGATTTAGAGGAGGAAGATGAGTAT 1381 ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1275 GAAGCAGAGAAAGAGATAGACGAGCTTCTGAATTTGGATTTAGAGGAGGAAGATGAGTAT 1334 Query 1382 GACCAGTTGCCTACAATCCGTATCCTTGGGAAATCCCGGTTTGAGAAGCTGTCAAAGTCT 1441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1335 GACCAGTTGCCTACAATCCGTATCCTTGGGAAATCCCGGTTTGAGAAGCTGTCAAAGTCT 1394 Query 1442 CAGAAGAAGGAGTATCTCGATGAGCTTGATTACAGGGAAACCCTTTATCTGAAGAAACAA 1501 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1395 CAGAAGAAAGAGTATCTCGATGAGCTTGATTACAGGGAAACCCTTTATCTGAAGAAACAA 1454 Query 1502 TTGAAGGAAGAATGCCGAAGACGACGGGATGAAAAGCTAGTTGAAGAGGAAAATCTCGAG 1561 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1455 TTGAAGGAAGAATGCCGAAGACGACGGGATGAAAAGCTAATTGAAGAGGAAAATCTCAAT 1514 Query 1562 GACACTGAACAGCGTGATCAAGCAGCTGTTCCACTGCCTGACATGGCAGGTCCAGACAGT 1621 |||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1515 GACACTGAACAGAGCGAGCAAGCAGCTGTTCCACTGCCTGACATGGCAGGTCCAGACAGT 1574 Query 1622 TTTGATTCGGATTTTCCGGCTCACAGATATCGATGCGTAT-CGGCAGGTGACCAGTGGCT 1680 || ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1575 TTCGATTCGGATTTTCCGGCTCACAGATATCGATGCGT-TGCGGCAGGTGACCAGTGGCT 1633 Query 1681 CGTGAGACCTGTCTATGACCCACAAGGTTGGGATCGCGATGTGGGATTTGATGGAATAAA 1740 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1634 CGTGAGACCTGTCTATGATCCACAAGGTTGGGATCGCGATGTGGGATTTGATGGAATAAA 1693 Query 1741 TATTGAGACGGCTGCAAAAATAAATAGGAATCTATTCGCTTCAGCTACAGGACAGGTGAG 1800 ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1694 TATTGAGACAGCTGCAAAAATAAAAAGGAATCTATTTGCTTCAGCTACAGGACAGGTGAG 1753 Query 1801 CAGAGACAAGCAACGCTTCACTATCCAATCTGAGACTAATGCAGCTTATACTAGAAACTT 1860 ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1754 CAGAGACAAGCAACGTTTCACTATCCAATCCGAGACTAATGCAGCATATACTAGAAACTT 1813 Query 1861 TAGAGAACAGACATTCTCTGTAGCTGTTGACCTTCAATCATCAGGAGAAGATCTGGTGTA 1920 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1814 TAGAGAACAGACGTTCGCTGTAGCTGTTGACCTTCAATCATCAGGAGAAGATCTGGTGTA 1873 Query 1921 CTCGTTTCAGGGCGGCACAAAGCTTCAAACATTTAAGCACAACACAACTGATGTTGGAGT 1980 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1874 CTCGTTTCAGGGCGGCACAAAGCTTCAAACATTTAAGCACAACACAACTGATCTTGGAGT 1933 Query 1981 TGGTTTGACATCTTTTGGTGGGAAATACTATGTGGGCGGAAAGCTTGAGGATACCTTATT 2040 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1934 TGGGGTGACATCTTTTGGTGGGAAATACTATGTGGGCGGAAAGCTTGAGGATACCTTATT 1993 Query 2041 GGTTGGGAAGAGGGTGAAGTTAACTGCGAATGCAGGTCAGATGAGGGGTTCAGGGCAAAC 2100 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1994 GGTTGGGAAGAGGGTGAAGTTAACTGTGAATGCAGGTCAGATGAGGGGTTCAGGGCAAAC 2053 Query 2101 AGCAAACGGCGGGAGCTTTGAAGCTTGTATCAGAGGGAGAGATTACCCGGTCAGAAATGA 2160 |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2054 AGCACATGGTGGGAGCTTTGAAGCTTGTATCAGAGGGAGAGATTACCCGGTCAGAAATGA 2113 Query 2161 GCAAATCGGTTTGACAATGACGGCTCTGTCTTTCAAGCGAGAACTGGTCTTGAACTATGG 2220 ||||||| ||||||||| ||| |||||||| ||||| ||||| ||||||||||||||||| Sbjct 2114 GCAAATCAGTTTGACAACGACTGCTCTGTCATTCAACCGAGAGCTGGTCTTGAACTATGG 2173 Query 2221 TTTACAGACTCAGTTTAGACCAGCCCGGGGCACGAACATAGACGTCAACATAAACATGAA 2280 ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 2174 TTTACAGACTCAGCTTAGACCAGCACGGGGCACGAACATAGACGTCAGCATAAACATGAA 2233 Query 2281 CAATAGGAAAATGGGGAAGATAAATGTGAAACTTAACAGCTCTGAGCACTGGGAGATTGC 2340 ||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||| || Sbjct 2234 CAACAGGAAAATGGGGAAGATAAACGTGAAACTCAACAGCGCTGAGCACTGGGAGATCGC 2293 Query 2341 TTTGATATCAGCGTTAACGATGTTCAAGGCTTTAGTACGGCGGAGTAAGACTGAAATGAC 2400 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 2294 TTTGATATCAGCGTTAACGATGTTCAAGGCTTTAGTACGGCGGAGGAAGAGTGAAATGAC 2353 Query 2401 TGAGGAAAATGAAGAAGAAAAGATTGTGAATTTTCT-CGTTTCCT 2444 ||||||||||||||||| || |||||| |||||| |||||||| Sbjct 2354 AAAGGAAAATGAAGAAGAAGAG-TTGTGACTTTTCTTCGTTTCCT 2397 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96673041810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5