BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20360.1
Length=2628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488945 jgi|Araly1|488945|fgenesh2_kg.6__2079__AT5G20360.1 3456 0.0
> Ahg488945 jgi|Araly1|488945|fgenesh2_kg.6__2079__AT5G20360.1
Length=2316
Score = 3456 bits (1871), Expect = 0.0
Identities = 2137/2262 (94%), Gaps = 31/2262 (1%)
Strand=Plus/Plus
Query 189 TTCAAAGGTTGAAACTTTAGATGATTGTGTTTCAAAGG-TGAAAACTTTAGATGACTGTG 247
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 66 TTCAGAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTG-AAACTTTAGATGACTGTG 124
Query 248 TTTCAAAGGTTGAAAATTTAGATGATTGTGTTCCAAAGGTGGAAACTTTAGATGATTGTG 307
||||||||||||||| ||| | |||||||||| ||||||| |||||||||||||| ||||
Sbjct 125 TTTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTG 184
Query 308 TTCCAAAGGTGGAAACTTTAGATGATTGTGTTTCAGAGGTTGAAACTTTAGATGACTGTG 367
|| ||||||| |||||||| | ||||||||||||| |||||||| |||||||||| ||||
Sbjct 185 TTTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAATCTTTAGATGATTGTG 244
Query 368 TTTCAAAGGCACAAGGTTTGAAGGAAGAAGGGAACAAGTTGTTTCAGAAGAGAGATTATG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TTTCAAAGGCACAAGGTTTGAAGGAAGAAGGGAACAAGTTGTTTCAGAAGAGAGATTATG 304
Query 428 ATGGTGCAATGTTTAAATATGGTGAAGCAATCAAGATACTTCCTAAGGATCATGTAGAAG 487
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 305 ATGGTGCAATGTTCAAATATGGTGAAGCTATCAAGATACTTCCTAAGGATCATGTAGAGG 364
Query 488 TGTCTCATGTTCGAGCTAATGTGGCTTCTTGTTATATGCAATTGGAACCAGGTGAGTTTG 547
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 365 TGTCTCATGTTCGAGCTAATATGGCTTCTTGTTATATGCAATTGGAACCAGGCGAGTTTT 424
Query 548 CCAAAGCCATTCATGAATGTGATTTAGCGCTAAGTGTTACTCCTGATCATAATAAAGCAT 607
| ||||| ||| |||||||||||||||| || ||||||||||||||||||| |||||| |
Sbjct 425 CGAAAGCGATTTATGAATGTGATTTAGCACTTAGTGTTACTCCTGATCATAGTAAAGCCT 484
Query 608 TGTTGAAGAGGGCAAGATGTTATGAGGCATTGAATAAGTTGGATTTGGCTTTGAGAGATG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGTTGAAGAGGGCAAGATGTTATGAGGCATTGAATAAGTTGGATTTGGCTTTGAGAGATG 544
Query 668 TTTGTATGGTTTCGAAACTGGATCCCAAGAATCCCATGGCATCCGAAATTGTTGAGAAGC 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 545 TTTGTATGGTTTCGAAACTGGATCCCAAGAATCCCATGGCATCCGAAATTGTTGACAAGC 604
Query 728 TTAAGAGAACTTTAGAGAGCAAAGGGTTAAGGATTAATAATTCAGTGATAGAGTTGCCTC 787
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 605 TTAAGAGAACTTTAGAGAGCAAAGGGTTAAGGGTTAATGATTCAGTGATAGAGTTGCCTC 664
Query 788 CAGATTATGTTGAACCTGTTG-GTGCTTCCCCTGCAGCACTGTGGGCTAAACTAGGCAAG 846
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 665 CAGATTATGTTGAACCTGTTGAG-GCTTCCCCTGCAGCACTGTGGGCTAAACTAGGCAA- 722
Query 847 GT-ACGAGTGAAGAAAACTAAAAAGAGCAATCAAGTGGAAGAGAAGAGCGAGGGTGAGGG 905
|| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||
Sbjct 723 GTCACGAGTGAAGAAAACCAAAAAGAGCAATCAAGTGCAAGAGAAGAGCGAGGGT---GG 779
Query 906 TGAGGATGTAGAGCCTGAGAAGAAGAACAATGTTTTAGCTGAAAAAGGCAAGGAAAAGA- 964
|| |||||||| ||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 780 -GA--ATGTAGAGACTGAGAAGAAGAACATTGTTGCAGCTGAAAAAGGCAAGGAAAAAAT 836
Query 965 T-T--A-AA--A-TG------AAA-GTAAAAGGGAAACAGTCGGATAAGAGAAGTGATAC 1010
| | | || | | ||| | |||||||||||||| |||||||||||||||||
Sbjct 837 TATCGATAAGCAGAGCAAAAAAAATGGAAAAGGGAAACAGTTGGATAAGAGAAGTGATAT 896
Query 1011 GAGCAAGGAACAGGAAAAAGTGATAATTGAGGAAGAACTTCTGGTTATAGGTGTAGAAGA 1070
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 897 GAGCAAGGAAAAGGAAAAAGTGATAATTGAGGAGGAACTTCTGGTTGTAGGTGTAGAAGA 956
Query 1071 TGTAAACAAGGATGTGAAATTCGTATACTCTGACGATATAAGATTGGCTGAGTTGCCTAT 1130
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 957 TGTAAACAAGGATGTGAAATTCGTATACTCTGACGACATAAGATTGGCTGAGTTGCCTAT 1016
Query 1131 AAATTGCACTCTCTTTAAACTTAGGGAAGTTGTTCATGAGCGTTTCCCAAGCTTAAGAGC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AAATTGCACTCTCTTTAAACTTAGGGAAGTTGTTCATGAGCGTTTCCCAAGCTTAAGAGC 1076
Query 1191 AGTTCATATAAAGTACAGGGACCAAGAAGGAGATTTAGTGACAATCACAACAGATGAAGA 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AGTTCATATAAAGTACAGGGACCAAGAAGGAGATTTAGTGACAATCACAACAGATGAAGA 1136
Query 1251 GTTAAGAATGAGTGAGGTGTCATCAAGGTCACAGGGCACTATGAGGTTCTATGTAGTGGA 1310
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GCTAAGAATGAGTGAGGTGTCATCAAGGTCACAGGGCACTATGAGGTTCTATGTAGTGGA 1196
Query 1311 AGTTAGTCCTGAGCAGGATCCCTTTTTCGGAAGATTAGTTGAGATGAAGAAACTCAAAAT 1370
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1197 AGTTAGTCCTGAGCAGGATCCCTTTTTTGGAAGATTAGTTGAGATGAAGAAACTCAAAAT 1256
Query 1371 TACTGCTGATTCTTTTAAAGCAAAGGTAAACGGAAGAGGTGGATGTAAAGTTGAAGATTG 1430
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1257 TACCGCTGATTCTTTTAAAGCAAAGGTATACGGAAGAGGTGGATGTAAAGTTGAAGATTG 1316
Query 1431 GATGATTGAATTTGCTCATCTTTTTAAGATCCAGGCCAGAATTGATTCTGATAGATGCTT 1490
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1317 GATGATTGAATTTGCTCAGCTTTTTAAGACCCAGGCCAGAATTGATTCTGATACATGCTT 1376
Query 1491 GAATCTTCAAGAACTTGGGATGAAACTTAATTCAGAAGCTATGGAGGAAGTGGTAACCTC 1550
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1377 GAATCTTCAAGAACTTGGGATGAAACTTAATTCAGAAGCTATGGAGGAGGTGGTAACCTC 1436
Query 1551 CGATGCAGCTCAAGGTCCTTTTGACAGGGCAGCTCAGCAATTCCAAGAAGTTGCAGCTCG 1610
| ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 1437 CAATGCAGCTCAAGGTCCTTTTGACAGAGCGGCTCATCAATTCCAAGAAGTGGCAGCTCG 1496
Query 1611 ATCATTGTTAAACTTGGGATATGTGCACATGTCAGGGGCAAGGAAAAGGTTGAGCCTCCT 1670
|||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1497 ATCATTGTTAAAGTTGGGAAATGTGCACATGTCGGGGGCAAGGAAAAGGTTGAGCCTCCT 1556
Query 1671 ACAAGGTGTTTCTGGAGAATCTGTTTCTGAGCAAGTTAAAACTGCTTATGAATGCGCTAA 1730
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1557 ACATGGTGTTTCTGGAGAATCTGTTTCTGACCAAGTTAAAACTGCTTATGAATGCGCTCA 1616
Query 1731 GAAGGAGCACGCAAATGCAAAAGAAAAGTATGAAGAGGCCATGAAAATAAAGCCAGAGTG 1790
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1617 GAAGGAGCACGCAAAAGCAAAAGAAAAGTACGAAGAGGCCATGAAAATAAAGCCGGAGTT 1676
Query 1791 TTTTGAAGTCTTTCTGGCACTAGGTCTGCAGCAGTTTGAGGAAGCAAGACTTTCATGGTA 1850
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TTTTGAAGTCTTTCTGGCGCTAGGTCTGCAGCAGTTTGAGGAAGCAAGACTTTCATGGTA 1736
Query 1851 TTATGTACTTGTCAGTCACCTTGATTTGAAAACATGGCCGTATGCAGATGTAGTACAGTT 1910
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1737 TTATGTACTTGTCTGTCACCTTGATTTGAAAACATGGCCATATGCAGATGTAGTACAGTT 1796
Query 1911 TTATCAAAGCGCAGAAAGCAATATCAAAAAGTCTATGGAAGTGTTAGAAAA-TTTGGAAA 1969
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1797 TTATCAAAGCGCCGAAAGCAATATCAAAAAGTCTATGGAAGTGTT-GAAAAATTTGGAAA 1855
Query 1970 CCGGAAAGGAAAGTGAGCCTTCTCAAGCAGGCAAAACCGATTGCCTGACACATGAAAAGG 2029
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 CCAAAAAGGAAAGTGAGACTTCTCAAGCAGGCAAAACCGATTGCCTGACACATGAAAAGG 1915
Query 2030 AT-CTGGGTAGCTCAACTCAAAATAACCCAGCAAAAGAAGCAGGAAGGCTAAAGTCGTGG 2088
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1916 -TGCCGGGTAGCTCAACTCAAAATAACCCAGCAAAAGAAGCAGGAAGGCTAAAGTCATGG 1974
Query 2089 ATAGATATTTTATTGTGTGCTGTACTTTATGAGAGATCAATCATGGAGTACAAACTTGAC 2148
|||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1975 ATAGATATTTTATTATGTACTGTACTTTATGAGAAATCAATCATGGAGTACAAACTTGAC 2034
Query 2149 CAACCGTTCTGGCGAGAGAGTTTAGAAGCTGCAATGGAGAAATTTGAGTTAGCTGGAACT 2208
||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2035 CAACCATTCTGGAGAGAGAGTTTAGAAGCTGCAACGGAGAAATTTGAGTTAGCTGGAACT 2094
Query 2209 TGTAAGGATGATGTTGTTGAGATAATAAGTGAAGATTATGTGGCAGGCAATACATTACGA 2268
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2095 TGTAGGGATGATGTTGTTGCGATAATAAGTGAAGATTCTGTGGCAGGCAATACATTACGA 2154
Query 2269 GATATAAGGTTTCACATGGAAGAGATTATACAGATTTTTGACGAGATATATGAAGCAAAA 2328
||| ||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2155 GATCTAAGGATTCACGTGGAAGAGATAATACAGATTTTTAACGAGATATATGAAGCAAAA 2214
Query 2329 CATTGGACAAATGGGATCCCTTCAGACCAGTTGGAAGAGATACTAAAGAGAAGGGCTGAA 2388
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2215 CATTGGACAAATGGGATCCCATCAGACCAGTTGGAAGAGATACTAAAGAGAAGGGCTGAA 2274
Query 2389 AATATATTTCATGTGCCAAATATAGCAATCCAACGTGGTTGA 2430
||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2275 AATATCTTTCATGTGTCAAATATAGCAATCCAACGTGGTTGA 2316
Score = 353 bits (191), Expect = 3e-96
Identities = 237/258 (92%), Gaps = 7/258 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAGCAAAATGAGGAG-ATATCTACAGATGATGCTGAAACAAGCCAAAGTCAATT 59
||||||||||||||||| ||| | |||||| | ||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGCAAAATGA-GAGCAAATCTAC--A-GATGCTGAAACAAGCCAAAGTCAATT 56
Query 60 AGTGGATGATTCAAAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTGAAACCTTAGA 119
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 57 AGTGGATGATTCAGAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTGAAACTTTAGA 116
Query 120 TGACTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGTTTCAAAGGCGGAAACTTTAGC 179
||||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||
Sbjct 117 TGACTGTGTTTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAAACTTTAGA 176
Query 180 TGATTGTGTTTCAAAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGT-GAAAACTTTAG 238
||| ||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||
Sbjct 177 TGACTGTGTTTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAAT-CTTTAG 235
Query 239 ATGACTGTGTTTCAAAGG 256
|||| |||||||||||||
Sbjct 236 ATGATTGTGTTTCAAAGG 253
Score = 259 bits (140), Expect = 7e-68
Identities = 173/189 (92%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 99 TTCAAAGGTTGAAACCTTAGATGACTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGT 158
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 66 TTCAGAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGT 125
Query 159 TTCAAAGGCGGAAACTTTAGCTGATTGTGTTTCAAAGGTTGAAACTTTAGATGATTGTGT 218
|||||||| |||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 126 TTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGT 185
Query 219 TTCAAAGGT-GAAAACTTTAGATGACTGTGTTTCAAAGGTTGAAAATTTAGATGATTGTG 277
||||||||| |||| |||| | ||| |||||||||||||||||| ||||||||||||||
Sbjct 186 TTCAAAGGTTGAAA-CTTTTGTTGATTGTGTTTCAAAGGTTGAATCTTTAGATGATTGTG 244
Query 278 TTCCAAAGG 286
|| ||||||
Sbjct 245 TTTCAAAGG 253
Score = 254 bits (137), Expect = 3e-66
Identities = 172/189 (91%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 129 TTCAAAGGTTGAAACTTTAGATGACTGTGTTTCAAAGGCGGAAACTTTAGCTGATTGTGT 188
|||| ||||||||||||||||||| ||||||||||||| |||||||||| ||| |||||
Sbjct 66 TTCAGAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGT 125
Query 189 TTCAAAGGTTGAAACTTTAGATGATTGTGTTTCAAAGG-TGAAAACTTTAGATGACTGTG 247
|||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||
Sbjct 126 TTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTG-AAACTTTAGATGACTGTG 184
Query 248 TTTCAAAGGTTGAAAATTTAGATGATTGTGTTCCAAAGGTGGAAACTTTAGATGATTGTG 307
||||||||||||||| ||| | |||||||||| ||||||| ||| |||||||||||||||
Sbjct 185 TTTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAATCTTTAGATGATTGTG 244
Query 308 TTCCAAAGG 316
|| ||||||
Sbjct 245 TTTCAAAGG 253
Score = 237 bits (128), Expect = 3e-61
Identities = 169/189 (89%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 159 TTCAAAGGCGGAAACTTTAGCTGATTGTGTTTCAAAGGTTGAAACTTTAGATGATTGTGT 218
|||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 66 TTCAGAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGT 125
Query 219 TTCAAAGGT-GAAAACTTTAGATGACTGTGTTTCAAAGGTTGAAAATTTAGATGATTGTG 277
||||||||| |||| |||| | ||| ||||||||||||||||||| ||||||||| ||||
Sbjct 126 TTCAAAGGTTGAAA-CTTTTGTTGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTG 184
Query 278 TTCCAAAGGTGGAAACTTTAGATGATTGTGTTCCAAAGGTGGAAACTTTAGATGATTGTG 337
|| ||||||| |||||||| | |||||||||| ||||||| ||| |||||||||||||||
Sbjct 185 TTTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAATCTTTAGATGATTGTG 244
Query 338 TTTCAGAGG 346
||||| |||
Sbjct 245 TTTCAAAGG 253
Score = 237 bits (128), Expect = 3e-61
Identities = 148/158 (94%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 69 TTCAAAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTGAAACCTTAGATGACTGTGT 128
|||||||||||||||||||||||| |||||||||||||||||||| || | ||| |||||
Sbjct 96 TTCAAAGGTTGAAACTTTAGATGACTGTGTTTCAAAGGTTGAAACTTTTGTTGATTGTGT 155
Query 129 TTCAAAGGTTGAAACTTTAGATGACTGTGTTTCAAAGGCGGAAACTTTAGCTGATTGTGT 188
|||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 156 TTCAAAGGTTGAAACTTTAGATGACTGTGTTTCAAAGGTTGAAACTTTTGTTGATTGTGT 215
Query 189 TTCAAAGGTTGAAACTTTAGATGATTGTGTTTCAAAGG 226
||||||||||||| ||||||||||||||||||||||||
Sbjct 216 TTCAAAGGTTGAATCTTTAGATGATTGTGTTTCAAAGG 253
Score = 182 bits (98), Expect = 2e-44
Identities = 118/128 (92%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 249 TTCAAAGGTTGAAAATTTAGATGATTGTGTTCCAAAGGTGGAAACTTTAGATGATTGTGT 308
|||| ||||||||| |||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct 66 TTCAGAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGT 125
Query 309 TCCAAAGGTGGAAACTTTAGATGATTGTGTTTCAGAGGTTGAAACTTTAGATGACTGTGT 368
| ||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 126 TTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGT 185
Query 369 TTCAAAGG 376
||||||||
Sbjct 186 TTCAAAGG 193
Score = 182 bits (98), Expect = 2e-44
Identities = 118/128 (92%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 69 TTCAAAGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTGAAACCTTAGATGACTGTGT 128
|||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 126 TTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGT 185
Query 129 TTCAAAGGTTGAAACTTTAGATGACTGTGTTTCAAAGGCGGAAACTTTAGCTGATTGTGT 188
|||||||||||||||||| | ||| ||||||||||||| ||| |||||| |||||||||
Sbjct 186 TTCAAAGGTTGAAACTTTTGTTGATTGTGTTTCAAAGGTTGAATCTTTAGATGATTGTGT 245
Query 189 TTCAAAGG 196
||||||||
Sbjct 246 TTCAAAGG 253
Score = 106 bits (57), Expect = 9e-22
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 314 AGGTGGAAACTTTAGATGATTGTGTTTCAGAGGTTGAAACTTTAGATGACTGTGTTTCAA 373
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 71 AGGTTGAAACTTTAGATGATTGTGTTTCAAAGGTTGAAACTTTAGATGACTGTGTTTCAA 130
Query 374 AGG 376
|||
Sbjct 131 AGG 133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99110817490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5