BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20380.1 Length=1839 Score E Sequences producing significant alignments: (Bits) Value Ahg941591 jgi|Araly1|941591|scaffold_602135.1 2652 0.0 > Ahg941591 jgi|Araly1|941591|scaffold_602135.1 Length=1596 Score = 2652 bits (1436), Expect = 0.0 Identities = 1535/1584 (97%), Gaps = 2/1584 (0%) Strand=Plus/Plus Query 54 ctcctctctctGACACCAACAATGGCGAGACTTACCTTGAGACCCCACAATCACTTCTTC 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCCTCTCTCTGACACCAACAATGGCGAGACTTACCTTGAGACCCCACAATCACTTCTTC 60 Query 114 TCATCTCCTATCTACGCACATAAACAACCTTTCCTCTCCGTATACACCATCTTCCCCCAC 173 || ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 TCCTCTCCTATCCACGCACATAAACAACCTTTCCTCTCCGTCTACACCATCTTCCCCCAC 120 Query 174 CACCACCAAAATCCTCTTATCAAATCAAGGGTTAAGTGCTCCGCCAGTGGTACTGAACGA 233 || ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 121 CATCACCACAATCCTCTTATCAAATCAAGGGTTAAGTGCTCCGCCAGTGGCACAGAACGA 180 Query 234 GTCAGAGAGAGTAAGAAGCTTCCTCCAAAGGATCCTATCGAAGACCCTAAACCCCAGCTT 293 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 181 GTCAGAGAGAGCAAGAAGCTTCCTCCAAAGGATTCTATCGAAGACCCTAAACCCCAGCTT 240 Query 294 CCGATTCCTGAAGTTCTCAGTACGGAAAC-GGGTTTTGAACAGAATTGGCCTCCATGGAA 352 |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 241 CCGATTCCGGAAGTTCTCAGTACGGAAACAGGG-TTTGAACAGAATTGGCCTCCATGGAA 299 Query 353 AAATATACCTCAGAGATATAAGCTTATCGGCGCTACTTCTCTCGCCTTTGTTATCTGCAA 412 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 AAATATACCTCAGAGATATAAGCTTATTGGCGCTACTTCTCTCGCCTTTGTTATCTGCAA 359 Query 413 TATGGACAAGGTGAACTTGAGTATTGCTATAATACCAATGTCACACCAGTTTGGATGGAG 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TATGGACAAGGTGAACTTGAGTATTGCTATAATACCAATGTCACACCAGTTTGGATGGAG 419 Query 473 CTCATCTGTGGCTGGGTTGGTCCAGTCTTCCTTCTTTTGGGGTTATGCCTTGAGCCAGTT 532 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 420 CTCATCTGTGGCCGGGTTGGTCCAGTCATCCTTCTTTTGGGGTTATGCCTTGAGCCAGTT 479 Query 533 GCCTGGAGGTTGGCTTTCCAAGATTTTTGGCGGAAGAAAAGTGCTTGAGATTGGTGTCTT 592 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 480 GCCTGGAGGTTGGCTTTCCAAGATTTTTGGTGGAAGAAAAGTGCTTGAGATTGGTGTCTT 539 Query 593 TACATGGTCTTTCGCTACAGCTCTTGTTCCACTACTTGCTGGATTTATGCCCGGTTTGAT 652 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 540 TACATGGTCTTTCGCTACAGCTCTTGTTCCACTACTTGCTGGATTTATGCCTGGTTTAAT 599 Query 653 CTTTTCTCGAATTTTGGTGGGAATAGGAGAAGGTGTTTCCCCATCGGCTGCGACAGACCT 712 ||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| Sbjct 600 CTTTTCTCGAATTTTGGTGGGAATAGGAGAAGGTGTTTCTCCATCAGCTGCAACGGACCT 659 Query 713 TATTGCCAGGACAATACCTGTTAAGGAGCGCTCAAGAGCGGTAGGCTTTGTTTTTGGAGG 772 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 660 TATTGCCAGGACAATACCTGTTAAAGAGCGCTCAAGGGCGGTAGGCTTTGTTTTTGGAGG 719 Query 773 ACTGAGTTTGGGGAGTGTAATGGGGCTTCTCTTGGCTCCTCCCATCATCGAAACCTTTAA 832 | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 720 ATTGAGTTTGGGGAGTGTAATGGGGCTTCTCTTGGCTCCTCCCATTATCGAAACCTTTAA 779 Query 833 TTGGGAATCTGTCTTTTACTTGTTTGGTCTCCTTGGTGTTGGCTGGTTCGTCGGGTTTCA 892 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TTGGGAATCTGTCTTTTACTTGTTTGGTCTCCTTGGTGTTGGCTGGTTCGTCGGGTTTCA 839 Query 893 GTTTCTTAATGAAGAAGAAGTTTCATATAAAGGTAATGAGATCTCTACTTCGCATAAATC 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GTTTCTTAATGAAGAAGAAGTTTCATATAAAGGTAATGAGATCTCTACTTCGCATAAATC 899 Query 953 AGAAAACGCTACAAAGGAAGAGTTGGGGAGCTCATTGAAGGAGATTCCATGGAAGTCATT 1012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AGAAAACGCTACAAAGGAAGAGTTGGGGAGCTCATTGAAGGAGATTCCATGGAAGTCATT 959 Query 1013 TTTCCAAAGCCCGGCTGTTTGGGCAATGATATACACTCACTTTTGTGGAAGTTGGGGTCA 1072 |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 960 TTTCCAAAGCTCGGCTGTTTGGGCAATGATATACACTCACTTTTGTGGAAGCTGGGGTCA 1019 Query 1073 CTATACCTGTTTATCTTGGCTACCAACTTATTTCAGTGAGGCTCTGAGTCTAAATTTGAC 1132 |||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||| Sbjct 1020 CTATACCTGTTTATCTTGGCTACCAACTTATTTCAGTGAGGCGCTTAATCTGAATTTGAC 1079 Query 1133 AGAAGCTGCTTGGGTTTCCATCCTTCCTCCACTGGCTTCGATTGTCGTGACAAGTCTTGC 1192 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1080 AGAAGCTGCTTGGGTTTCCATCCTTCCTCCATTGGCTTCGATTGTCGTGACAAGTATTGC 1139 Query 1193 TTCACAATTTGCTGATTACTTAATTACAAATGGAGTTGATACTACCACGGTCCGAAAGAT 1252 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1140 TTCACAATTTGCTGATTACTTAATTACAAATGGAGTTGAGACTACCACGGTCCGAAAGAT 1199 Query 1253 TTGTCAAACGATTGCGTTTGTGGCACCAGCGATCTGCATGACACTTTCATCTGTGGACAT 1312 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1200 TTGTCAAACGATTGCGTTTGTGTCCCCAGCGATCTGCATGACACTTTCATCTGTGGACAT 1259 Query 1313 TGGATTGCCACCATGGGAAATTGTAGGAATTTTGACAGCAGGCTTGGCCCTATCAAGTTT 1372 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1260 TGGATTGCCACCATGGGAAATTGTAGGAATCTTGACAGCAGGCTTGGCCCTATCAAGTTT 1319 Query 1373 TGCTTTATCAGGACTTTATTGTACTCATCAGGACATTTCACCCGAATATGCAAGCATACT 1432 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1320 TGCTTTATCAGGACTTTATTGTACTCATCAGGACATCTCACCCGAATATGCAAGCATACT 1379 Query 1433 CCTGGGTATTACAAACACAGTCGGGGCAGTACCTGGAATTGTAGGAGTGGCCCTAACTGG 1492 |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1380 CCTGGGTATTACCAACACAGTGGGGGCAGTACCTGGGATTGTAGGAGTGGCCCTAACTGG 1439 Query 1493 TTTTCTCCTAGACTCGACCCATTCCTGGACTATGTCTCTATTCGTGCCATCAATATTCTT 1552 ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1440 TTTTCTCCTTGACTCAACCCATTCCTGGACTATGTCTCTATTCGTGCCATCGATATTCTT 1499 Query 1553 CTACTTGACGGGGACGGTTGTATGGTTGGCATTTGCAAGCAGTGAGCCTCAGACGTTCAG 1612 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1500 CTACTTGACGGGGACAGTTGTATGGTTGGCATTTGCTAGCAGTGAGCCTCAGACGTTCAC 1559 Query 1613 AAAGGAAGACTCATAAGTTTTGTT 1636 ||||||||||||||||||||||| Sbjct 1560 TAAGGAAGACTCATAAGTTTTGTT 1583 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69057614185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5