BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20630.1 Length=890 Score E Sequences producing significant alignments: (Bits) Value Ahg941617 jgi|Araly1|941617|scaffold_602161.1 1029 0.0 > Ahg941617 jgi|Araly1|941617|scaffold_602161.1 Length=676 Score = 1029 bits (557), Expect = 0.0 Identities = 635/674 (94%), Gaps = 0/674 (0%) Strand=Plus/Plus Query 24 ATAAAACATTCTAAAGAAAAATGAAGATGATAATCCAAATTTTCTTCATCATCTCCCTCA 83 |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATAAAACATTTTAAAGAAAAATGAAGATGATAATCCATATTTTCTTCATCATCTCCCTCG 60 Query 84 TTTCAACCATCTCTTTTGCCTCTGTTCAAGACTTTTGTGTAGCTGACCCAAAGGGTCCTC 143 ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 61 TTTCATCCATCTCTTTTGCCTCTGTTCAAGACTTTTGTGTAGCTGATCCAAATGGTCCTC 120 Query 144 AAAGCCCATCAGGTTACTCTTGCAAGAACCCTGACCAAGTCACCGAAAATGACTTTGCAT 203 |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 121 AAAGTCCATCAGGGTACTCTTGCAAGAACCCTGACCAGGTCACCGAAAATGACTTTGCAT 180 Query 204 TTACCGGCCTCGGCACAGCTGGAAACACTTCCAACATCATTAAAGCCGCAGTGACTCCAG 263 || |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 TTTCCGGACTCGGCAAAGCTGGAAACACTTCGAACATCATTAAAGCCGCAGTGACTCCAG 240 Query 264 CCTTTGCTCCTGCTTACGCAGGCATCAATGGCCTTGGCGTATCTCTGGCTCGTCTTGACT 323 ||||||| ||||||| || |||| ||||||||||||||| ||||||||||||||||||| Sbjct 241 CCTTTGCGCCTGCTTTTGCGGGCACCAATGGCCTTGGCGTCTCTCTGGCTCGTCTTGACT 300 Query 324 TAGCCGGTGGTGGTGTCATCCCTCTCCACACTCATCCTGGTGCTTCTGAGGTCCTTGTAG 383 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 301 TAGCCGGTGGTGGTGTCATCCCTCTTCACACTCATCCTGGTGCTTCTGAGGCCCTTGTAG 360 Query 384 TCATTCAAGGCACCATTTGCGCCGGATTTATCTCCTCCGCCAACAAAGTTTACTTGAAGA 443 |||| ||||||||||||||||||||||| |||||||| || |||||||| |||||||||| Sbjct 361 TCATACAAGGCACCATTTGCGCCGGATTCATCTCCTCTGCTAACAAAGTCTACTTGAAGA 420 Query 444 CTCTCAACAGAGGAGATTCTATGGTGTTTCCTCAAGGACTTCTTCATTTTCAGCTAAACT 503 ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 421 CTCTCAACAGAGGCGATTCTATGGTGTTTCCTCAAGGGCTTCTTCATTTTCAGCTTAACT 480 Query 504 CTGGGAAAGGCCCTGCCTTGGCCTTTGTCGCATTCGGAAGCTCCTCCCCAGGGCTCCAAA 563 ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| | Sbjct 481 CTGGGAAAGGCCCTGCCTTAGCCTTCGTCGCCTTCGGAAGCTCCTCCCCGGGGCTCCAGA 540 Query 564 TTCTACCATTTGCTCTGTTTGCAAACGATTTGCCTTCAGAACTTGTTGAAGCCACAACGT 623 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 541 TTCTACCATTTGCTCTGTTTGCAAACGATTTGCCTTCAGAACTCGTTGAAGCCACGACGT 600 Query 624 TCCTTAGCGATGCAGAAGTTAAGAAGCTTAAGGGTGTGCTTGGGGGAACTAATTAAGCTT 683 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 601 TCCTTAGCGATGCAGAAGTTAAGAAGCTTAAGGGTGTGCTTGGAGGAACTAATTAAGCGT 660 Query 684 CTCTTAGTTTCATT 697 |||||| ||||||| Sbjct 661 CTCTTAATTTCATT 674 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32976323205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5