BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20700.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941626 jgi|Araly1|941626|scaffold_602170.1 1463 0.0
> Ahg941626 jgi|Araly1|941626|scaffold_602170.1
Length=926
Score = 1463 bits (792), Expect = 0.0
Identities = 883/926 (95%), Gaps = 10/926 (1%)
Strand=Plus/Plus
Query 103 TCTCTCAAGATCATGCTTACTAAAAGAACCCATCCCATGATCGGAAAGATATCGGAGCTC 162
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 9 TCTCTCAAGATCATGCTTACCAAAAGAACCCATCCCATGATCGGAAAGATATCGGAGCTC 68
Query 163 CTCGTCGGTGTCAACCGATCCACGGCGGCTCCTTTCTTCGACGTCTTGATGACGAGCCCT 222
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 69 CTCGTCGGTGTCAACCGATCCACGGCTGCTCCTTTCTTCGATGTCTTGATGACGAGCCCT 128
Query 223 AAAAGCCCACTGGATTTCAAGATTCTCCCTCAGATATCTCAAAGAAACAGCTCAAAGAGA 282
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 AAAAGCCCACTTGATTTCAAGATTCTCCCTCAGATATCTCAAAGAAACAGCTCAAAGAGA 188
Query 283 TTCTACGATGACAATCTTGGTGGCTCTGTTGGTCTAGGGATTGTAGCCGCGCTCGAGAAC 342
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 189 TTCTACGATGACAATCTTGGTGGCTCTGTTGGTCTAGGGATTGTAGCTGCACTCGAGAAC 248
Query 343 TCAAACACTCGTCGAATCACGAGCGTTTGTAGATCGGAACCGAACCAACCCGGCCGGTCT 402
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 249 TCAAACACTCGTCGAATCACGAGCGTTTGTAGATCGGAACCGACCCAACCCGGCGGGTCT 308
Query 403 GATCCGGTTCAGTTCATGAGCCATGGTGGAAGCACGGACGGAGAAGACGAGGAGATGTTC 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GATCCGGTTCAGTTCATGAGCCATGGTGGAAGCACGGACGGAGAAGACGAGGAGATGTTC 368
Query 463 ATAATGGACGAGGAGGATTACACGTTGGTGACATGCCACCATGGACCAAGTGGATCTTGT 522
|||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 369 ATAATGGACGAGGAAGATTACACGTTGGTGACATGTCACCATGGGCCTAGTGGATCTTGT 428
Query 523 AATACAAGGGTTTATGACAAAGATGGGTTTGAGTGTTTCTCAAGTAAGATCAACGATGAT 582
| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 429 AGTACAAGGATTTATGACAAAGATGGATTTGAGTGTTTCTCAAGTAAGATCAACGATGAT 488
Query 583 CGTCGGGAAAGACTTTTCGTGGTCGATGTCGTTACGGAATCTCCAGAGAATTCGCCAGAG 642
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 489 CGTCGGGAAAGACTCTTCGTGGTCGATGTCGTTACGGAATCTCCAGAGAATTCGCCGGAG 548
Query 643 TTTCAGGGTTTGGGTTTCCTCAATTCATGTTACTTGTGCAGGAAGAAACTTCATGGTCAA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 549 TTTCAGGGTTTGGGTTTCCTCAATTCATGTTACTTGTGCAGGAAGAAACTTCATGGTGAA 608
Query 703 GACATATTTATTTACAGAGGAGAAAAAGCATTTTGCAGCACAGAGTGTCGATCGAGTCAT 762
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 609 GACATATTTATTTACAGAGGAGAAAAAGCGTTTTGCAGCACAGAGTGTCGATCAAGTCAT 668
Query 763 ATAGCAAATGATGAAAGGAAAGAGAGATGTAGATCAAAATTCTCAACCTCTCCTTACACC 822
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATAGCAAATGAAGAAAGGAAAGAGAGATGTAGATCAAAATTCTCAACCTCTCCTTACACC 728
Query 823 GCCGGCCAAATTTTCTCCACCGGAGTTCTAGTGACTTAGCCGGAGTTCTT-CTACTGATG 881
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 729 GCCGGCCAAATTTTCTCCACCGGAGTTCTAGTGACTTAGCCGGAGTTCTTTCTACA-AT- 786
Query 882 AGTTtatatatatatatatGGGGG-ATTGGGGGTAAATAAAATAATTAGGCATAAATAAT 940
| || | ||||| |||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 787 A-TT-AGGCATATACGTATGGGGGGATCGGGGGTAAATAAAGTAATTAGGCATAAATAAT 844
Query 941 CGGGGCAGAGAAATAAATTAGCatatatatatataCTAAGACATGTATGTCCATATTATG 1000
||| ||||||||||||||||||||| | ||| ||| |||||||||||||||||||||
Sbjct 845 CGGCAAAGAGAAATAAATTAGCATATA-A-ATA--CTATGACATGTATGTCCATATTATG 900
Query 1001 GTGGAAACGAAACAACATCGAGAAAT 1026
||||||||||||||||||||||||||
Sbjct 901 GTGGAAACGAAACAACATCGAGAAAT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5