BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20790.1 Length=744 Score E Sequences producing significant alignments: (Bits) Value Ahg488984 jgi|Araly1|488984|fgenesh2_kg.6__2118__AT5G20790.1 761 0.0 Ahg936924 jgi|Araly1|936924|scaffold_501115.1 135 3e-31 > Ahg488984 jgi|Araly1|488984|fgenesh2_kg.6__2118__AT5G20790.1 Length=684 Score = 761 bits (412), Expect = 0.0 Identities = 632/728 (87%), Gaps = 55/728 (8%) Strand=Plus/Plus Query 8 ACACTTCAATAAAGAGATCGATGTCGACTTTGGAATCTCCATTAGAGGCGTTGGCGTTTG 67 ||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 1 ACATTTCAAGAAAGAGATCGATGTCGACATTGGAATCTCCATTGGAGGCGTTGGCTTTTG 60 Query 68 AATACGCTAGCTTAGGTGTTTTCGCCGTCGTCAACAACGTCTGGACATGGATCGCCGTCG 127 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AATACGCTAGCTTCGGTGTTTTCGCCGTCGTCAACAACGTCTGGACATGGATCGCCGTCG 120 Query 128 TGACTGCCGCTGTCAGCTTCTGGAGGATCAGAGTCACAACCAT-AGGAGTCGGAGACGGC 186 |||| ||||| |||||||||||||||||||||||||| ||||| || ||| ||||||||| Sbjct 121 TGACCGCCGCCGTCAGCTTCTGGAGGATCAGAGTCACCACCATCAG-AGTTGGAGACGGC 179 Query 187 CATGCATGTGTCTTGATAGAAGAATTAACCGGTTCTAAATCTGAAAACGAATCCGGTCGT 246 ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| Sbjct 180 CATGCATGTGTCTTGGTAGAGGAATTAACCGGTTCTAAATCGGAAAACGAATCCGGTCGT 239 Query 247 CTCGAACCGAAATCAATAACCGGTCCGGTCAAAGAAACGGTTGCACGAGTGAAGGAAACG 306 ||||||||||||||||||||||||||||| |||||||||| | | | || Sbjct 240 CTCGAACCGAAATCAATAACCGGTCCGGTTAAAGAAACGG----A--A---A------CG 284 Query 307 GTTACGAAAACGGAGCCGTTAATATGCGATGACGGAGTGAC-AAAGGGGAAGCTGACGAT 365 ||||| ||||||||||||||||| | |||||||||||||| |||||| ||||||||||| Sbjct 285 GTTACAAAAACGGAGCCGTTAATGTATGATGACGGAGTGACCAAAGGG-AAGCTGACGAT 343 Query 366 GTGCTACGAGGTAGACGTTGACGTTGACGGTGGGAGGTGTGTT-A--------ACGGAGA 416 || ||| ||||||||||||||||||||||||||||||||| || | ||||||| Sbjct 344 GTACTATGAGGTAGACGTTGACGTTGACGGTGGGAGGTGTATTGAGTCTGTTGACGGAGA 403 Query 417 TTTAACGGCAGTTAGCTACGGAGGAGGTTTGGGTAATTGTGGCGGGGATTGGTGGGAGAA 476 |||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||| Sbjct 404 GTTAACGGCCGTTAGCTGCGGAGGAGGTTTGGGTAATTGTGGCGGTGAGTGGTGGGAGAA 463 Query 477 ATGGGATGGAGTGGTGAGGATGAGAAATGGTGATGACAGTTGGTACCGTTACGTGGATTT 536 |||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 464 ATGGGAAAGAGTGGTGAGGATGAGAAATGGTGATGACGGTTGGTATCGTTACGTGGATTT 523 Query 537 AACGGTGATTAATGGAAATGTGGTAAGGTTATGGGATGACAACAAAACACTAGTAACGGC 596 |||||||||||| |||||||| || |||||||||||||||| | | | ||||||||||| Sbjct 524 AACGGTGATTAACGGAAATGTTGTGAGGTTATGGGATGACACCCAGAG-CTAGTAACGGC 582 Query 597 GGCATGTGTCTAAATTAGAGAAGTTTCATATTTCGGAAAGTTTTTAAATCTTGAGAAGCT 656 |||| ||||||||||||||| ||| | | || | |||||||| || Sbjct 583 GGCAGGTGTCTAAATTAGAG---TTT--T-T-----AA--T--------CTTGAGAAACT 621 Query 657 TTCTTGGTTTGAAGTGttttttttttGTTGGTTGATTAAGTTGTAATTTGTAAATAATTT 716 |||||||||| |||||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 622 TTCTTGGTTTAAAGTGTATTTTTT--G--G-TTGATTAAGTTGTAATTTGTAAATAATTT 676 Query 717 TCACACAA 724 |||||||| Sbjct 677 TCACACAA 684 > Ahg936924 jgi|Araly1|936924|scaffold_501115.1 Length=610 Score = 135 bits (73), Expect = 3e-31 Identities = 99/111 (89%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 466 TGGTGGGAGAAATGGGATG-GAGTGGTGAGGATGAGAAATGGTGATGACA-GTTGGTACC 523 |||||||||| |||||| | |||||||| |||||||||||| ||||| | ||||||||| Sbjct 423 TGGTGGGAGAGATGGGA-GACAGTGGTGAAGATGAGAAATGGAGATGA-AGGTTGGTACC 480 Query 524 GTTACGTGGATTTAACGGTGATTAATGGAAATGTGGTAAGGTTATGGGATG 574 ||||||||||||||||||||||||| |||||||| || ||||| ||||||| Sbjct 481 GTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATG 531 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27410377323 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5