BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20820.1 Length=646 Score E Sequences producing significant alignments: (Bits) Value Ahg488987 jgi|Araly1|488987|fgenesh2_kg.6__2121__AT5G20820.1 785 0.0 > Ahg488987 jgi|Araly1|488987|fgenesh2_kg.6__2121__AT5G20820.1 Length=560 Score = 785 bits (425), Expect = 0.0 Identities = 527/574 (92%), Gaps = 15/574 (3%) Strand=Plus/Plus Query 30 ctctctctctctcACCGGAAAACTCACTCGGACTTACATTTCCGACGTCAAACTT-CTCC 88 |||||||||||||||||||||||| |||||||||| ||| |||||||||||| || || | Sbjct 1 CTCTCTCTCTCTCACCGGAAAACTTACTCGGACTTGCATCTCCGACGTCAAAATTCCT-C 59 Query 89 AAACCGAATCGGTAATGGCGAAAGGAGGAAACAAACTGATGAAGCTGAAATCAGTTTTGA 148 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AAACGGAATCGGAAATGGCGAAAGGAGGAAACAAACTGATGAAGCTGAAATCAGTTTTGA 119 Query 149 AGAAACTCAATTCATTCAACACCAAGCCTAACCAGCCACCAGCTCAAACCAATCACAGCC 208 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| Sbjct 120 AGAAACTCAATTCATTCAACACCAAGCCTAACCAACCACAAGCTCAAACCAATCACGGCC 179 Query 209 GATCCTCCGCCGTGAGTGCGTTCCCCTCTGAAGACCTTCAAACTGTCTACGTAGGCCGAA 268 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 180 GATCCTCCGCCGTGAGTGCATTTCCCTCTGAAGACCTTCAAACTGTCTACGTAGGCCGAA 239 Query 269 CACGGAGGACATACCACGTGAGCTCCGATGTCGTGAGCCACCCGCTCTTCCAGCAGCTAG 328 |||||||| | |||||||||||||| || || |||||||||||||||||||||||||||| Sbjct 240 CACGGAGGCCGTACCACGTGAGCTCTGACGTTGTGAGCCACCCGCTCTTCCAGCAGCTAG 299 Query 329 CGGCGGTGGATGGTGGATGCGGCAGCGAGGACGGTTCCATCTCTGTGTCGTGCGAAGTTG 388 ||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct 300 CGGCGGTGGATGGTGGATGTGGCAGCGAGGACGGTTCCATCTCCGTGTCATGTGAAGTTG 359 Query 389 TCTTGTTTGAGCATTTGCTTTGGATGTTGGAGAACGCCGACGCCGATGAGTCACGCCCCG 448 |||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||| | Sbjct 360 TCTTGTTTGAGCATTTGCTTTGGATGCTGGAGAACGCGGACGCTGACGAGTCACGCCCTG 419 Query 449 AGTCGGTCTACGAACTTGTCGAGTTCTACGCTTGTTAACTCTTTATGATTAATTTAGGTT 508 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AGTCGGTCCACGAACTTGTCGAGTTCTACGCTTGTTAACTCTTTATGATTAATTTAGGTT 479 Query 509 CAAAATATATTTATGATTAAATGTTACATGTTTGTATATTCTACACTTTGTATACTTTAC 568 |||||||||| | || | | | | |||||||||||||||| ||||| | || | || Sbjct 480 CAAAATATATACA--ATGA--T-T-A-ATGTTTGTATATTCTATACTTT-TGTA-T--AC 528 Query 569 ACTTTACATAGTATTTCGTGAAATAATCTATTTT 602 |||||||||| ||||||||||||||||||||| Sbjct 529 --TTTACATAGTCTTTCGTGAAATAATCTATTTT 560 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23674331457 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5